SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class g: Small proteins [56992] (100 folds)
Fold g.3: Knottins (small inhibitors, toxins, lectins) [57015] (19 superfamilies)
disulfide-bound fold; contains beta-hairpin with two adjacent disulfides
Superfamily g.3.11: EGF/Laminin [57196] (8 families)
Family g.3.11.1: EGF-type module [57197] (23 proteins)
Protein automated matches [190092] (2 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [187310] (69 PDB entries)
1. Domain for 1w0y:
  - Domain d1w0yl2: 1w0y L:87-142 [120569]
    Other proteins in same PDB: d1w0yh_, d1w0yl1, d1w0yl3, d1w0yt1, d1w0yt2
    automated match to d2a2ql2
    complexed with 771, bgc, ca, cac, fuc
2. Domain for 1w2k:
  - Domain d1w2kl2: 1w2k L:87-142 [120586]
    Other proteins in same PDB: d1w2kh_, d1w2kl1, d1w2kl3, d1w2kt1, d1w2kt2
    automated match to d2a2ql2
    complexed with 380, bgc, ca, cac, fuc
3. Domain for 1w7x:
  - Domain d1w7xl_: 1w7x L: [120700]
    Other proteins in same PDB: d1w7xh_
    automated match to d1klil_
    complexed with 413, ca, gol, so4
4. Domain for 1w8b:
  - Domain d1w8bl_: 1w8b L: [120717]
    Other proteins in same PDB: d1w8bh_
    automated match to d1klil_
    complexed with 413, ca
5. Domain for 1z6e:
  - Domain d1z6el_: 1z6e L: [124519]
    Other proteins in same PDB: d1z6ea_
    automated match to d1g2lb_
    complexed with ik8
6. Domain for 2aer:
  - Domain d2aerl2: 2aer L:87-142 [126642]
    Other proteins in same PDB: d2aerh_, d2aerl1, d2aerl3, d2aert1, d2aert2, d2aert3
    automated match to d2a2ql2
    complexed with ben, ca, cl, fuc, glc, mg, na, zn
7. Domain for 2bmg:
  - Domain d2bmga_: 2bmg A: [128795]
    Other proteins in same PDB: d2bmgb_
    automated match to d1g2lb_
    complexed with ca, i1h
8. Domain for 2bok:
  - Domain d2bokl_: 2bok L: [128917]
    Other proteins in same PDB: d2boka_
    automated match to d1g2lb_
    complexed with 784, na
9. Domain for 2bq6:
  - Domain d2bq6a_: 2bq6 A: [128961]
    Other proteins in same PDB: d2bq6b_
    automated match to d1g2lb_
    complexed with ca, iib
10. Domain for 2bq7:
  - Domain d2bq7a_: 2bq7 A: [128963]
    Other proteins in same PDB: d2bq7b_
    automated match to d1g2lb_
    complexed with ca, iid
11. Domain for 2bqw:
  - Domain d2bqwa_: 2bqw A: [128971]
    Other proteins in same PDB: d2bqwb_
    automated match to d1g2lb_
    complexed with ca, iie
12. Domain for 2bz6:
  - Domain d2bz6l_: 2bz6 L: [129553]
    Other proteins in same PDB: d2bz6h_
    automated match to d1klil_
    complexed with 346, ca, so4
13. Domain for 2ec9:
  - Domain d2ec9l2: 2ec9 L:87-142 [146787]
    Other proteins in same PDB: d2ec9h_, d2ec9l1, d2ec9l3, d2ec9u_
    automated match to d2a2ql2
    complexed with 24x, aso, ca, fuc
14. Domain for 2fzz:
  - Domain d2fzzl_: 2fzz L: [134487]
    Other proteins in same PDB: d2fzza_
    automated match to d1g2lb_
    complexed with 5qc
15. Domain for 2g00:
  - Domain d2g00l_: 2g00 L: [134489]
    Other proteins in same PDB: d2g00a_
    automated match to d1g2lb_
    complexed with 4qc
16. Domain for 2jkh:
  - Domain d2jkhl_: 2jkh L: [166242]
    Other proteins in same PDB: d2jkha_
    automated match to d1g2lb_
    complexed with bi7, ca, na
17. Domain for 2p16:
  - Domain d2p16l_: 2p16 L: [149155]
    Other proteins in same PDB: d2p16a_
    automated match to d1g2lb_
    complexed with ca, gg2
18. Domain for 2p3t:
  - Domain d2p3ta_: 2p3t A: [149186]
    Other proteins in same PDB: d2p3tb_
    automated match to d1g2lb_
    complexed with 993, ca, cl
19. Domain for 2p3u:
  - Domain d2p3ua_: 2p3u A: [149188]
    Other proteins in same PDB: d2p3ub_
    automated match to d1g2lb_
    complexed with 663, ca
20. Domain for 2p93:
  - Domain d2p93l_: 2p93 L: [149323]
    Other proteins in same PDB: d2p93a_
    automated match to d1g2lb_
    complexed with me1
21. Domain for 2p94:
  - Domain d2p94l_: 2p94 L: [149325]
    Other proteins in same PDB: d2p94a_
    automated match to d1g2lb_
    complexed with me4
22. Domain for 2p95:
  - Domain d2p95l_: 2p95 L: [149327]
    Other proteins in same PDB: d2p95a_
    automated match to d1g2lb_
    complexed with me5
23. Domain for 2q1j:
  - Domain d2q1jb_: 2q1j B: [149997]
    Other proteins in same PDB: d2q1ja_
    automated match to d1g2lb_
    complexed with ca, fxi
24. Domains for 2vvc:
  1. Domain d2vvck_: 2vvc K: [168853]
    Other proteins in same PDB: d2vvca_, d2vvcb_
    automated match to d1g2lb_
    complexed with ca, lzf, na
  2. Domain d2vvcl_: 2vvc L: [168854]
    Other proteins in same PDB: d2vvca_, d2vvcb_
    automated match to d1g2lb_
    complexed with ca, lzf, na
25. Domain for 2vvu:
  - Domain d2vvul_: 2vvu L: [168871]
    Other proteins in same PDB: d2vvua_
    automated match to d1g2lb_
    complexed with ca, h22, na
26. Domain for 2vvv:
  - Domain d2vvvl_: 2vvv L: [168873]
    Other proteins in same PDB: d2vvva_
    automated match to d1g2lb_
    complexed with ca, h21, na
27. Domain for 2vwl:
  - Domain d2vwll_: 2vwl L: [168876]
    Other proteins in same PDB: d2vwla_
    automated match to d1g2lb_
    complexed with ca, cl, lzh, na
28. Domains for 2vwm:
  1. Domain d2vwmk_: 2vwm K: [168879]
    Other proteins in same PDB: d2vwma_, d2vwmb_
    automated match to d1g2lb_
    complexed with lzi, na
  2. Domain d2vwml_: 2vwm L: [168880]
    Other proteins in same PDB: d2vwma_, d2vwmb_
    automated match to d1g2lb_
    complexed with lzi, na
29. Domain for 2vwn:
  - Domain d2vwnl_: 2vwn L: [168882]
    Other proteins in same PDB: d2vwna_
    automated match to d1g2lb_
    complexed with ca, cl, h25, na
30. Domain for 2vwo:
  - Domain d2vwol_: 2vwo L: [168884]
    Other proteins in same PDB: d2vwoa_
    automated match to d1g2lb_
    complexed with ca, cl, lzg, na
31. Domain for 2w26:
  - Domain d2w26b1: 2w26 B:1-49 [169013]
    Other proteins in same PDB: d2w26a_, d2w26b2
    automated match to d1g2lb_
    complexed with ca, riv
32. Domain for 2w3i:
  - Domain d2w3ib_: 2w3i B: [169040]
    Other proteins in same PDB: d2w3ia_
    automated match to d1g2lb_
    complexed with ca, l1c
33. Domain for 2w3k:
  - Domain d2w3kb_: 2w3k B: [169042]
    Other proteins in same PDB: d2w3ka_
    automated match to d1g2lb_
    complexed with ca, l1d
34. Domain for 2wph:
  - Domain d2wphe_: 2wph E: [169541]
    Other proteins in same PDB: d2wphs_
    automated match to d1rfnb_
    complexed with 1pe, ca; mutant
35. Domain for 2wpi:
  - Domain d2wpie_: 2wpi E: [169543]
    Other proteins in same PDB: d2wpis_
    automated match to d1rfnb_
    complexed with ca; mutant
36. Domain for 2wpj:
  - Domain d2wpje_: 2wpj E: [169545]
    Other proteins in same PDB: d2wpjs_
    automated match to d1rfnb_
    complexed with ca; mutant
37. Domain for 2wpk:
  - Domain d2wpke_: 2wpk E: [169547]
    Other proteins in same PDB: d2wpks_
    automated match to d1rfnb_
    complexed with ca, edo; mutant
38. Domain for 2wpl:
  - Domain d2wple_: 2wpl E: [169549]
    Other proteins in same PDB: d2wpls_
    automated match to d1rfnb_
    mutant
39. Domain for 2wpm:
  - Domain d2wpme_: 2wpm E: [169551]
    Other proteins in same PDB: d2wpms_
    automated match to d1rfnb_
    complexed with ca; mutant
40. Domain for 2xbv:
  - Domain d2xbvl_: 2xbv L: [170006]
    Other proteins in same PDB: d2xbva_
    automated match to d1g2lb_
    complexed with ca, na, xbv
41. Domain for 2xbw:
  - Domain d2xbwl_: 2xbw L: [170008]
    Other proteins in same PDB: d2xbwa_
    automated match to d1g2lb_
    complexed with 455, ca, na
42. Domain for 2xbx:
  - Domain d2xbxl_: 2xbx L: [170010]
    Other proteins in same PDB: d2xbxa_
    automated match to d1g2lb_
    complexed with ca, na, rr8
43. Domain for 2xby:
  - Domain d2xbyl_: 2xby L: [170012]
    Other proteins in same PDB: d2xbya_
    automated match to d1g2lb_
    complexed with 63c, ca, na
44. Domain for 2xc0:
  - Domain d2xc0l_: 2xc0 L: [170014]
    Other proteins in same PDB: d2xc0a_
    automated match to d1g2lb_
    complexed with 8nc, ca, na
45. Domain for 2xc4:
  - Domain d2xc4l_: 2xc4 L: [170017]
    Other proteins in same PDB: d2xc4a_
    automated match to d1g2lb_
    complexed with ca, ivk, na
46. Domain for 2xc5:
  - Domain d2xc5l_: 2xc5 L: [170019]
    Other proteins in same PDB: d2xc5a_
    automated match to d1g2lb_
    complexed with ca, na, oyj
47. Domain for 2y5f:
  - Domain d2y5fl_: 2y5f L: [170611]
    Other proteins in same PDB: d2y5fa_
    automated match to d1g2lb_
    complexed with na, xwg
48. Domain for 2y5g:
  - Domain d2y5gl_: 2y5g L: [170613]
    Other proteins in same PDB: d2y5ga_
    automated match to d1g2lb_
    complexed with fjd, na
49. Domain for 2y5h:
  - Domain d2y5hl_: 2y5h L: [170615]
    Other proteins in same PDB: d2y5ha_
    automated match to d1g2lb_
    complexed with na, y5h
50. Domain for 3cen:
  - Domain d3cenl_: 3cen L: [156531]
    Other proteins in same PDB: d3cena_
    automated match to d1g2lb_
    complexed with fxa
51. Domain for 3cs7:
  - Domain d3cs7l_: 3cs7 L: [156957]
    Other proteins in same PDB: d3cs7a_
    automated match to d1g2lb_
    complexed with ca, lg0
52. Domains for 3ens:
  1. Domain d3ensa1: 3ens A:90-126 [199344]
    Other proteins in same PDB: d3ensb_, d3ensd_
    automated match to d1xkal1
    complexed with act, ca, ens, gol, mes, na
  2. Domain d3ensa2: 3ens A:127-178 [199345]
    Other proteins in same PDB: d3ensb_, d3ensd_
    automated match to d1xkbb2
    complexed with act, ca, ens, gol, mes, na
  3. Domain d3ensc1: 3ens C:89-126 [199347]
    Other proteins in same PDB: d3ensb_, d3ensd_
    automated match to d1xkal1
    complexed with act, ca, ens, gol, mes, na
  4. Domain d3ensc2: 3ens C:127-178 [199348]
    Other proteins in same PDB: d3ensb_, d3ensd_
    automated match to d1xkbb2
    complexed with act, ca, ens, gol, mes, na
53. Domain for 3ffg:
  - Domain d3ffgl_: 3ffg L: [175753]
    Other proteins in same PDB: d3ffga_
    automated match to d1g2lb_
    complexed with ffg
54. Domains for 3hpt:
  1. Domain d3hpta1: 3hpt A:90-126 [199518]
    Other proteins in same PDB: d3hptb_, d3hptd_
    automated match to d1xkal1
    complexed with act, ca, dms, gol, mes, na, yet
  2. Domain d3hpta2: 3hpt A:127-178 [199519]
    Other proteins in same PDB: d3hptb_, d3hptd_
    automated match to d1xkbb2
    complexed with act, ca, dms, gol, mes, na, yet
  3. Domain d3hptc1: 3hpt C:89-126 [199521]
    Other proteins in same PDB: d3hptb_, d3hptd_
    automated match to d1xkal1
    complexed with act, ca, dms, gol, mes, na, yet
  4. Domain d3hptc2: 3hpt C:127-178 [199522]
    Other proteins in same PDB: d3hptb_, d3hptd_
    automated match to d1xkbb2
    complexed with act, ca, dms, gol, mes, na, yet
55. Domains for 3k9x:
  1. Domain d3k9xa1: 3k9x A:90-126 [199611]
    Other proteins in same PDB: d3k9xb_, d3k9xd_
    automated match to d1xkal1
    complexed with ca, gol, mbm, na
  2. Domain d3k9xa2: 3k9x A:127-178 [199612]
    Other proteins in same PDB: d3k9xb_, d3k9xd_
    automated match to d1xkbb2
    complexed with ca, gol, mbm, na
  3. Domain d3k9xc1: 3k9x C:94-126 [199614]
    Other proteins in same PDB: d3k9xb_, d3k9xd_
    automated match to d1xkal1
    complexed with ca, gol, mbm, na
  4. Domain d3k9xc2: 3k9x C:127-178 [199615]
    Other proteins in same PDB: d3k9xb_, d3k9xd_
    automated match to d1xkbb2
    complexed with ca, gol, mbm, na
56. Domain for 3kqb:
  - Domain d3kqbl_: 3kqb L: [179551]
    Other proteins in same PDB: d3kqba_
    automated match to d1g2lb_
    complexed with lgj, na
57. Domain for 3kqc:
  - Domain d3kqcl_: 3kqc L: [179553]
    Other proteins in same PDB: d3kqca_
    automated match to d1g2lb_
    complexed with lgk, na
58. Domain for 3kqd:
  - Domain d3kqdl_: 3kqd L: [179555]
    Other proteins in same PDB: d3kqda_
    automated match to d1g2lb_
    complexed with lgl, na
59. Domain for 3kqe:
  - Domain d3kqel_: 3kqe L: [179557]
    Other proteins in same PDB: d3kqea_
    automated match to d1g2lb_
    complexed with lgm, na
60. Domain for 3m36:
  - Domain d3m36l_: 3m36 L: [180779]
    Other proteins in same PDB: d3m36a_
    automated match to d1g2lb_
    complexed with ca, m35
61. Domain for 3m37:
  - Domain d3m37l_: 3m37 L: [180781]
    Other proteins in same PDB: d3m37a_
    automated match to d1g2lb_
    complexed with ca, m37
62. Domain for 3sw2:
  - Domain d3sw2a_: 3sw2 A: [233648]
    Other proteins in same PDB: d3sw2b_
    automated match to d3ensa2
    complexed with ca, fi1, gol, na
63. Domain for 3th2:
  - Domain d3th2l3: 3th2 L:87-142 [239807]
    Other proteins in same PDB: d3th2h_, d3th2l1, d3th2l2, d3th2t1, d3th2t2
    automated match to d2a2ql2
    complexed with ben, bgc, ca, cl, fuc, mg, na
64. Domain for 3th3:
  - Domain d3th3l2: 3th3 L:87-142 [233680]
    Other proteins in same PDB: d3th3h_, d3th3l1, d3th3t1, d3th3t2
    automated match to d1danl2
    complexed with 0ge, bgc, ca, cl, fuc
65. Domain for 3th4:
  - Domain d3th4l3: 3th4 L:87-142 [239810]
    Other proteins in same PDB: d3th4h_, d3th4l1, d3th4l2, d3th4t1, d3th4t2
    automated match to d2a2ql2
    complexed with 0ge, bgc, ca, cl, fuc, mg, na
66. Domain for 4nga:
  - Domain d4ngal_: 4nga L: [235901]
    Other proteins in same PDB: d4ngah_
    automated match to d1w7xl_
    complexed with 2kf, ca, gol, so4
67. Domain for 4zh8:
  - Domain d4zh8b_: 4zh8 B: [280575]
    Other proteins in same PDB: d4zh8a_
    automated match to d3sw2a_
    complexed with 4o4, ca
68. Domain for 5e8d:
  - Domain d5e8da_: 5e8d A: [310481]
    Other proteins in same PDB: d5e8dh_, d5e8dl1, d5e8dl2
    automated match to d1k36a_
    complexed with cl, gol
69. Domains for 5wb7:
  1. Domain d5wb7e_: 5wb7 E: [340693]
    automated match to d1k36a_
    complexed with nag
  2. Domain d5wb7f_: 5wb7 F: [340719]
    automated match to d1k36a_
    complexed with nag
  3. Domain d5wb7g_: 5wb7 G: [340772]
    automated match to d1k36a_
    complexed with nag
  4. Domain d5wb7h_: 5wb7 H: [340771]
    automated match to d1k36a_
    complexed with nag
Mouse (Mus musculus) [TaxId:10090] [334131] (3 PDB entries)
1. Domain for 5kxh:
  - Domain d5kxhb_: 5kxh B: [334189]
    automated match to d1f7ea_
    complexed with gdp, gol, nag
2. Domain for 5ky2:
  - Domain d5ky2b_: 5ky2 B: [334174]
    automated match to d1f7ea_
    complexed with bgc, gdp, gol, nag
3. Domain for 5ky3:
  - Domain d5ky3b_: 5ky3 B: [334132]
    automated match to d1f7ea_
    complexed with gfb, gol, nag; mutant

More info for Protein automated matches from g.3.11.1: EGF-type module

Timeline for Protein automated matches from g.3.11.1: EGF-type module:

Protein automated matches from g.3.11.1: EGF-type module first appeared in SCOPe 2.01
Protein automated matches from g.3.11.1: EGF-type module appears in SCOPe 2.07