Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2395482Fold b.36: PDZ domain-like [50155] (1 superfamily)
    contains barrel, partly opened; n*=4, S*=8; meander; capped by alpha-helix
  4. 2395483Superfamily b.36.1: PDZ domain-like [50156] (7 families) (S)
    peptide-binding domain
  5. 2395484Family b.36.1.1: PDZ domain [50157] (47 proteins)
    Pfam PF00595
  6. 2395833Protein automated matches [190055] (6 species)
    not a true protein

Species:

  1. 2395834African clawed frog (Xenopus laevis) [TaxId:8355] [187076] (1 PDB entry)
  2. 2395837Fruit fly (Drosophila melanogaster) [TaxId:7227] [255425] (2 PDB entries)
    1. Domain for 2lc6:
    2. Domain for 2lc7:
  3. 2395840Homo sapiens, influenza a virus [TaxId:9606] [193650] (1 PDB entry)
  4. 2395842Human (Homo sapiens) [TaxId:9606] [187785] (61 PDB entries)
    1. Domain for 2eeg:
    2. Domain for 2ejy:
    3. Domain for 2ev8:
    4. Domain for 2exg:
    5. Domain for 2h2b:
    6. Domain for 2h2c:
    7. Domain for 2h3m:
    8. Domains for 2he2:
      1. 2395851Domain d2he2a1: 2he2 A:418-513 [204544]
        Other proteins in same PDB: d2he2a2, d2he2a3, d2he2b2, d2he2b3
        automated match to d1pdra_
      2. 2395852Domain d2he2b1: 2he2 B:418-513 [204545]
        Other proteins in same PDB: d2he2a2, d2he2a3, d2he2b2, d2he2b3
        automated match to d1pdra_
    9. Domain for 2he4:
    10. Domain for 2iwq:
    11. Domain for 2jxo:
    12. Domain for 2kbs:
    13. Domain for 2kpk:
    14. Domain for 2kpl:
    15. Domain for 2m3m:
    16. Domain for 2ocs:
    17. Domain for 2ozf:
    18. Domain for 2pa1:
    19. Domain for 2pkt:
    20. Domains for 2vph:
      1. 2395890Domain d2vpha_: 2vph A: [168757]
        automated match to d2cs5a1
      2. 2395891Domain d2vphb_: 2vph B: [168758]
        automated match to d2cs5a1
    21. Domains for 2vrf:
      1. 2395892Domain d2vrfa1: 2vrf A:112-200 [168768]
        Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
        automated match to d1qava_
        complexed with edo
      2. 2395893Domain d2vrfb1: 2vrf B:112-200 [168769]
        Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
        automated match to d1qava_
        complexed with edo
      3. 2395894Domain d2vrfc1: 2vrf C:112-200 [168770]
        Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
        automated match to d1qava_
        complexed with edo
      4. 2395895Domain d2vrfd1: 2vrf D:112-200 [168771]
        Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
        automated match to d1qava_
        complexed with edo
    22. Domain for 2w4f:
    23. Domain for 2x7z:
    24. Domain for 2yt7:
    25. Domain for 2yt8:
    26. Domains for 3i4w:
      1. 2395858Domain d3i4wa_: 3i4w A: [178090]
        automated match to d1tp3a1
        complexed with act
      2. 2395859Domain d3i4wb_: 3i4w B: [178091]
        automated match to d1tp3a1
        complexed with act
      3. 2395860Domain d3i4wc_: 3i4w C: [178092]
        automated match to d1tp3a1
        complexed with act
      4. 2395861Domain d3i4wd_: 3i4w D: [178093]
        automated match to d1tp3a1
        complexed with act
    27. Domain for 3k82:
    28. Domains for 3rl7:
      1. 2395946Domain d3rl7a_: 3rl7 A: [185006]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      2. 2395947Domain d3rl7b1: 3rl7 B:220-310 [185007]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      3. 2395948Domain d3rl7c_: 3rl7 C: [185008]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      4. 2395949Domain d3rl7d1: 3rl7 D:220-310 [185009]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      5. 2395950Domain d3rl7e_: 3rl7 E: [185010]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      6. 2395951Domain d3rl7f1: 3rl7 F:220-309 [185011]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
    29. Domains for 3rl8:
      1. 2395929Domain d3rl8a_: 3rl8 A: [185012]
        automated match to d1qlca_
      2. 2395930Domain d3rl8b_: 3rl8 B: [185013]
        automated match to d1qlca_
      3. 2395931Domain d3rl8c_: 3rl8 C: [185014]
        automated match to d1qlca_
      4. 2395932Domain d3rl8d_: 3rl8 D: [185015]
        automated match to d1qlca_
      5. 2395933Domain d3rl8e_: 3rl8 E: [185016]
        automated match to d1qlca_
    30. Domain for 4jl7:
    31. Domain for 4lmm:
    32. Domain for 4mpa:
    33. Domain for 4n6x:
    34. Domains for 4oeo:
      1. 2395909Domain d4oeoa1: 4oeo A:18-110 [268492]
        Other proteins in same PDB: d4oeoa2, d4oeob2, d4oeoc2
        automated match to d2h2ba_
        complexed with 12p, act, so4
      2. 2395910Domain d4oeob1: 4oeo B:18-110 [268495]
        Other proteins in same PDB: d4oeoa2, d4oeob2, d4oeoc2
        automated match to d2h2ba_
        complexed with 12p, act, so4
      3. 2395911Domain d4oeoc1: 4oeo C:18-110 [268496]
        Other proteins in same PDB: d4oeoa2, d4oeob2, d4oeoc2
        automated match to d2h2ba_
        complexed with 12p, act, so4
    35. Domains for 4oep:
      1. 2395952Domain d4oepa1: 4oep A:18-110 [268502]
        Other proteins in same PDB: d4oepa2, d4oepa3, d4oepb2, d4oepb3
        automated match to d2rrma_
        complexed with 12p, act
      2. 2395953Domain d4oepb1: 4oep B:18-110 [268514]
        Other proteins in same PDB: d4oepa2, d4oepa3, d4oepb2, d4oepb3
        automated match to d2rrma_
        complexed with 12p, act
    36. Domain for 4p0c:
    37. Domain for 4pqw:
    38. Domains for 4q2o:
      1. 2395923Domain d4q2oa_: 4q2o A: [259471]
        automated match to d2eega_
      2. 2395924Domain d4q2ob_: 4q2o B: [259472]
        automated match to d2eega_
      3. 2395925Domain d4q2oc_: 4q2o C: [263610]
        automated match to d4q2oa_
      4. 2395926Domain d4q2od_: 4q2o D: [261254]
        automated match to d2eega_
      5. 2395927Domain d4q2oe_: 4q2o E: [263611]
        automated match to d4q2oa_
      6. 2395928Domain d4q2of_: 4q2o F: [263612]
        automated match to d4q2oa_
    39. Domains for 4q3h:
      1. 2395866Domain d4q3ha_: 4q3h A: [257610]
        automated match to d2ozfa_
      2. 2395867Domain d4q3hb_: 4q3h B: [263629]
        automated match to d2ozfa_
    40. Domains for 4yyx:
      1. 2395904Domain d4yyxa1: 4yyx A:18-120 [271160]
        Other proteins in same PDB: d4yyxa2, d4yyxb2
        automated match to d2h2ba_
        complexed with fmt
      2. 2395905Domain d4yyxb1: 4yyx B:18-120 [271161]
        Other proteins in same PDB: d4yyxa2, d4yyxb2
        automated match to d2h2ba_
        complexed with fmt
    41. Domains for 5oib:
      1. 2395876Domain d5oiba_: 5oib A: [355784]
        automated match to d3i4wa_
        complexed with so4
      2. 2395877Domain d5oibb_: 5oib B: [355791]
        automated match to d3i4wa_
        complexed with so4
      3. 2395878Domain d5oibc_: 5oib C: [355787]
        automated match to d3i4wa_
        complexed with so4
      4. 2395879Domain d5oibd_: 5oib D: [355810]
        automated match to d3i4wa_
        complexed with so4
      5. 2395880Domain d5oibe_: 5oib E: [355819]
        automated match to d3i4wa_
        complexed with so4
      6. 2395881Domain d5oibf_: 5oib F: [355809]
        automated match to d3i4wa_
        complexed with so4
    42. Domain for 5oig:
    43. Domain for 5oih:
    44. Domain for 6esp:
    45. Domains for 6hks:
      1. 2395938Domain d6hksa_: 6hks A: [369117]
        automated match to d2vphb_
        complexed with iod
      2. 2395939Domain d6hksb_: 6hks B: [369116]
        automated match to d2vphb_
        complexed with iod
      3. 2395940Domain d6hksc_: 6hks C: [369144]
        automated match to d2vphb_
        complexed with iod
      4. 2395941Domain d6hksd_: 6hks D: [369122]
        automated match to d2vphb_
        complexed with iod
      5. 2395942Domain d6hkse_: 6hks E: [369115]
        automated match to d2vphb_
        complexed with iod
      6. 2395943Domain d6hksf_: 6hks F: [369121]
        automated match to d2vphb_
        complexed with iod
    46. Domains for 6lca:
      1. 2395913Domain d6lcaa_: 6lca A: [395253]
        automated match to d3fy5a_
        complexed with so4
      2. 2395914Domain d6lcab_: 6lca B: [395252]
        automated match to d3fy5a_
        complexed with so4
      3. 2395915Domain d6lcac_: 6lca C: [395271]
        automated match to d3fy5a_
        complexed with so4
      4. 2395916Domain d6lcad_: 6lca D: [395299]
        automated match to d3fy5a_
        complexed with so4
      5. 2395917Domain d6lcae_: 6lca E: [395263]
        automated match to d3fy5a_
        complexed with so4
      6. 2395918Domain d6lcaf_: 6lca F: [395334]
        automated match to d3fy5a_
        complexed with so4
      7. 2395919Domain d6lcag_: 6lca G: [395254]
        automated match to d3fy5a_
        complexed with so4
      8. 2395920Domain d6lcah_: 6lca H: [395210]
        automated match to d3fy5a_
        complexed with so4
    47. Domain for 6lcb:
    48. Domain for 6myf:
    49. Domains for 6nh9:
      1. 2395906Domain d6nh9a1: 6nh9 A:487-571 [378595]
        Other proteins in same PDB: d6nh9a2, d6nh9b2
        automated match to d1kwaa_
      2. 2395907Domain d6nh9b1: 6nh9 B:487-571 [378612]
        Other proteins in same PDB: d6nh9a2, d6nh9b2
        automated match to d1kwaa_
      3. 2395908Domain d6nh9c_: 6nh9 C: [378609]
        Other proteins in same PDB: d6nh9a2, d6nh9b2
        automated match to d1kwaa_
    50. Domains for 6qji:
      1. 2395883Domain d6qjia_: 6qji A: [367896]
        automated match to d3i4wa_
        complexed with so4
      2. 2395884Domain d6qjib_: 6qji B: [367988]
        automated match to d3i4wa_
        complexed with so4
      3. 2395885Domain d6qjic_: 6qji C: [367974]
        automated match to d3i4wa_
        complexed with so4
      4. 2395886Domain d6qjid_: 6qji D: [367921]
        automated match to d3i4wa_
        complexed with so4
      5. 2395887Domain d6qjie_: 6qji E: [367906]
        automated match to d3i4wa_
        complexed with so4
      6. 2395888Domain d6qjif_: 6qji F: [367926]
        automated match to d3i4wa_
        complexed with so4
    51. Domain for 6qjj:
    52. Domain for 6qjk:
    53. Domains for 6spv:
      1. 2395921Domain d6spva1: 6spv A:58-153 [375256]
        automated match to d3gsla1
        complexed with gsh
      2. 2395922Domain d6spva2: 6spv A:154-246 [375257]
        automated match to d3gsla2
        complexed with gsh
    54. Domains for 6zbq:
      1. 2395855Domain d6zbqa1: 6zbq A:243-335 [407477]
        Other proteins in same PDB: d6zbqa2, d6zbqa3, d6zbqb2
        automated match to d2kawa_
        complexed with qe2
      2. 2395856Domain d6zbqb1: 6zbq B:245-335 [407556]
        Other proteins in same PDB: d6zbqa2, d6zbqa3, d6zbqb2
        automated match to d2kawa_
        complexed with qe2
    55. Domains for 6zbz:
      1. 2395868Domain d6zbza1: 6zbz A:244-335 [407442]
        Other proteins in same PDB: d6zbza2, d6zbzb2, d6zbzc2, d6zbzd2
        automated match to d2kawa_
        complexed with edo, qe5
      2. 2395869Domain d6zbzb1: 6zbz B:244-335 [407406]
        Other proteins in same PDB: d6zbza2, d6zbzb2, d6zbzc2, d6zbzd2
        automated match to d2kawa_
        complexed with edo, qe5
      3. 2395870Domain d6zbzc1: 6zbz C:244-335 [407467]
        Other proteins in same PDB: d6zbza2, d6zbzb2, d6zbzc2, d6zbzd2
        automated match to d2kawa_
        complexed with edo, qe5
      4. 2395871Domain d6zbzd1: 6zbz D:246-335 [407486]
        Other proteins in same PDB: d6zbza2, d6zbzb2, d6zbzc2, d6zbzd2
        automated match to d2kawa_
        complexed with edo, qe5
    56. Domains for 6zc3:
      1. 2395872Domain d6zc3a1: 6zc3 A:244-335 [407448]
        Other proteins in same PDB: d6zc3a2, d6zc3b2
        automated match to d2kawa_
        complexed with edo, jor
      2. 2395873Domain d6zc3b1: 6zc3 B:244-335 [407460]
        Other proteins in same PDB: d6zc3a2, d6zc3b2
        automated match to d2kawa_
        complexed with edo, jor
    57. Domains for 6zc4:
      1. 2395899Domain d6zc4a1: 6zc4 A:243-335 [407436]
        Other proteins in same PDB: d6zc4a2, d6zc4a3, d6zc4b2
        automated match to d2kawa_
        complexed with qez
      2. 2395900Domain d6zc4b1: 6zc4 B:245-335 [407520]
        Other proteins in same PDB: d6zc4a2, d6zc4a3, d6zc4b2
        automated match to d2kawa_
        complexed with qez
    58. Domain for 6zc6:
    59. Domains for 6zc7:
      1. 2395862Domain d6zc7a1: 6zc7 A:244-335 [407491]
        Other proteins in same PDB: d6zc7a2, d6zc7b2
        automated match to d2kawa_
        complexed with v31
      2. 2395863Domain d6zc7b1: 6zc7 B:243-335 [407529]
        Other proteins in same PDB: d6zc7a2, d6zc7b2
        automated match to d2kawa_
        complexed with v31
    60. Domains for 6zc8:
      1. 2395944Domain d6zc8a1: 6zc8 A:243-335 [407578]
        Other proteins in same PDB: d6zc8a2, d6zc8b2
        automated match to d2kawa_
        complexed with qek
      2. 2395945Domain d6zc8b1: 6zc8 B:246-335 [407526]
        Other proteins in same PDB: d6zc8a2, d6zc8b2
        automated match to d2kawa_
        complexed with qek
    61. Domains for 7jo7:
      1. 2395934Domain d7jo7a1: 7jo7 A:860-949 [402031]
        Other proteins in same PDB: d7jo7a2, d7jo7b2, d7jo7c2, d7jo7d2
        automated match to d2h3lb_
        complexed with edo
      2. 2395935Domain d7jo7b1: 7jo7 B:860-949 [402018]
        Other proteins in same PDB: d7jo7a2, d7jo7b2, d7jo7c2, d7jo7d2
        automated match to d2h3lb_
        complexed with edo
      3. 2395936Domain d7jo7c1: 7jo7 C:860-949 [402042]
        Other proteins in same PDB: d7jo7a2, d7jo7b2, d7jo7c2, d7jo7d2
        automated match to d2h3lb_
        complexed with edo
      4. 2395937Domain d7jo7d1: 7jo7 D:860-950 [402034]
        Other proteins in same PDB: d7jo7a2, d7jo7b2, d7jo7c2, d7jo7d2
        automated match to d2h3lb_
        complexed with edo
  5. 2395967Mouse (Mus musculus) [TaxId:10090] [189198] (6 PDB entries)
    1. Domain for 1z86:
    2. Domain for 2kaw:
    3. Domain for 2rrm:
    4. Domain for 2wl7:
    5. Domains for 3axa:
      1. 2395977Domain d3axaa_: 3axa A: [231813]
        automated match to d3axab_
      2. 2395978Domain d3axab_: 3axa B: [195552]
        automated match to d1xz9a1
    6. Domains for 3o5n:
      1. 2395969Domain d3o5na_: 3o5n A: [182807]
        automated match to d1q3ob_
        complexed with br0
      2. 2395970Domain d3o5nb_: 3o5n B: [182808]
        automated match to d1q3ob_
        complexed with br0
      3. 2395971Domain d3o5nc_: 3o5n C: [182809]
        automated match to d1q3ob_
        complexed with br0
      4. 2395972Domain d3o5nd_: 3o5n D: [182810]
        automated match to d1q3ob_
        complexed with br0
      5. 2395973Domain d3o5ne_: 3o5n E: [182811]
        automated match to d1q3ob_
        complexed with br0
      6. 2395974Domain d3o5nf_: 3o5n F: [182812]
        automated match to d1q3ob_
        complexed with br0
      7. 2395975Domain d3o5ng_: 3o5n G: [182813]
        automated match to d1q3ob_
        complexed with br0
      8. 2395976Domain d3o5nh_: 3o5n H: [182814]
        automated match to d1q3ob_
        complexed with br0
  6. 2395982Norway rat (Rattus norvegicus) [TaxId:10116] [186775] (10 PDB entries)
    1. Domain for 1tp5:
    2. Domains for 2awu:
      1. 2396000Domain d2awua_: 2awu A: [162931]
        automated match to d1qlca_
      2. 2396001Domain d2awub_: 2awu B: [162932]
        automated match to d1qlca_
    3. Domains for 2aww:
      1. 2395994Domain d2awwa_: 2aww A: [162933]
        automated match to d1qlca_
      2. 2395995Domain d2awwb_: 2aww B: [162934]
        automated match to d1qlca_
    4. Domains for 2awx:
      1. 2395990Domain d2awxa_: 2awx A: [162935]
        automated match to d1qlca_
        complexed with his
      2. 2395991Domain d2awxb_: 2awx B: [162936]
        automated match to d1qlca_
        complexed with his
    5. Domain for 2fn5:
    6. Domains for 2g2l:
      1. 2395998Domain d2g2la_: 2g2l A: [164562]
        automated match to d1qlca_
      2. 2395999Domain d2g2lb_: 2g2l B: [164563]
        automated match to d1qlca_
    7. Domains for 2i0l:
      1. 2395992Domain d2i0la_: 2i0l A: [165356]
        automated match to d1qlca_
      2. 2395993Domain d2i0lb_: 2i0l B: [165357]
        automated match to d1qlca_
    8. Domains for 3gsl:
      1. 2395986Domain d3gsla1: 3gsl A:61-153 [246353]
        Other proteins in same PDB: d3gsla3
        automated match to d4h11a_
      2. 2395987Domain d3gsla2: 3gsl A:154-253 [246354]
        Other proteins in same PDB: d3gsla3
        automated match to d4h11a_
      3. 2395988Domain d3gslb1: 3gsl B:61-153 [246355]
        Other proteins in same PDB: d3gsla3
        automated match to d4h11a_
      4. 2395989Domain d3gslb2: 3gsl B:154-253 [246356]
        Other proteins in same PDB: d3gsla3
        automated match to d4h11a_
    9. Domains for 4h11:
      1. 2395983Domain d4h11a1: 4h11 A:93-188 [202347]
        Other proteins in same PDB: d4h11a2, d4h11a3, d4h11b2, d4h11b3
        automated match to d4h11b_
        complexed with act, so4
      2. 2395984Domain d4h11b1: 4h11 B:93-188 [196742]
        Other proteins in same PDB: d4h11a2, d4h11a3, d4h11b2, d4h11b3
        automated match to d2wl7a_
        complexed with act, so4
    10. Domains for 5ova:
      1. 2395996Domain d5ovaa1: 5ova A:580-674 [347318]
        Other proteins in same PDB: d5ovaa2, d5ovab2
        automated match to d3o5nf_
      2. 2395997Domain d5ovab1: 5ova B:580-674 [347284]
        Other proteins in same PDB: d5ovaa2, d5ovab2
        automated match to d3o5nf_

More info for Protein automated matches from b.36.1.1: PDZ domain

Timeline for Protein automated matches from b.36.1.1: PDZ domain: