SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.36: PDZ domain-like [50155] (1 superfamily)
contains barrel, partly opened; n*=4, S*=8; meander; capped by alpha-helix
Superfamily b.36.1: PDZ domain-like [50156] (7 families)
peptide-binding domain
Family b.36.1.1: PDZ domain [50157] (47 proteins)
Pfam PF00595
Protein automated matches [190055] (6 species)
not a true protein

Species:

African clawed frog (Xenopus laevis) [TaxId:8355] [187076] (1 PDB entry)
- Domains for 3fy5:
  1. Domain d3fy5a_: 3fy5 A: [176133]
    automated match to d1l6oa_
  2. Domain d3fy5b_: 3fy5 B: [176134]
    automated match to d1l6oa_
Fruit fly (Drosophila melanogaster) [TaxId:7227] [255425] (2 PDB entries)
1. Domain for 2lc6:
  - Domain d2lc6a1: 2lc6 A:130-255 [242839]
    Other proteins in same PDB: d2lc6a2
    automated match to d1ry4a_
2. Domain for 2lc7:
  - Domain d2lc7a_: 2lc7 A: [242840]
    automated match to d1rzxa_
Homo sapiens, influenza a virus [TaxId:9606] [193650] (1 PDB entry)
- Domain for 3pdv:
  - Domain d3pdva_: 3pdv A: [193651]
    automated match to d2pa1a_
    complexed with na
Human (Homo sapiens) [TaxId:9606] [187785] (51 PDB entries)
1. Domain for 2eeg:
  - Domain d2eega1: 2eeg A:8-88 [241748]
    Other proteins in same PDB: d2eega2, d2eega3
    automated match to d1v5la_
2. Domain for 2ejy:
  - Domain d2ejya_: 2ejy A: [241772]
    automated match to d1kwaa_
3. Domain for 2ev8:
  - Domain d2ev8a_: 2ev8 A: [241792]
    automated match to d1kwaa_
4. Domain for 2exg:
  - Domain d2exga2: 2exg A:6-101 [132526]
    Other proteins in same PDB: d2exga3
    automated match to d1xz9a1
    complexed with stf
5. Domain for 2h2b:
  - Domain d2h2ba1: 2h2b A:18-110 [193817]
    Other proteins in same PDB: d2h2ba2, d2h2ba3
    automated match to d2h3ma_
    complexed with acy
6. Domain for 2h2c:
  - Domain d2h2ca1: 2h2c A:18-110 [193816]
    Other proteins in same PDB: d2h2ca2, d2h2ca3
    automated match to d2h3ma_
7. Domain for 2h3m:
  - Domain d2h3ma1: 2h3m A:18-110 [164926]
    Other proteins in same PDB: d2h3ma2
    automated match to d2csja1
    complexed with so4
8. Domains for 2he2:
  1. Domain d2he2a1: 2he2 A:418-513 [204544]
    Other proteins in same PDB: d2he2a2, d2he2a3, d2he2b2, d2he2b3
    automated match to d1pdra_
  2. Domain d2he2b1: 2he2 B:418-513 [204545]
    Other proteins in same PDB: d2he2a2, d2he2a3, d2he2b2, d2he2b3
    automated match to d1pdra_
9. Domain for 2he4:
  - Domain d2he4a1: 2he4 A:147-230 [165063]
    Other proteins in same PDB: d2he4a2, d2he4a3
    automated match to d1g9oa_
    complexed with edo
10. Domain for 2iwq:
  - Domain d2iwqa1: 2iwq A:1148-1243 [204879]
    Other proteins in same PDB: d2iwqa2, d2iwqa3
    automated match to d2fcfa1
11. Domain for 2jxo:
  - Domain d2jxoa1: 2jxo A:150-240 [242307]
    Other proteins in same PDB: d2jxoa2
    automated match to d1gq5a_
12. Domain for 2kbs:
  - Domain d2kbsa_: 2kbs A: [242457]
    automated match to d1x5na1
13. Domain for 2kpk:
  - Domain d2kpka1: 2kpk A:0-125 [242610]
    Other proteins in same PDB: d2kpka2
    automated match to d1ueqa_
14. Domain for 2kpl:
  - Domain d2kpla1: 2kpl A:0-125 [242611]
    Other proteins in same PDB: d2kpla2
    automated match to d1ueqa_
    protein/DNA complex
15. Domain for 2m3m:
  - Domain d2m3ma1: 2m3m A:318-406 [243092]
    Other proteins in same PDB: d2m3ma2
    automated match to d3rl8c_
16. Domain for 2ocs:
  - Domain d2ocsa1: 2ocs A:8-90 [166644]
    Other proteins in same PDB: d2ocsa2, d2ocsa3
    automated match to d1gq4a_
    complexed with edo, scn
17. Domain for 2ozf:
  - Domain d2ozfa1: 2ozf A:150-235 [166924]
    Other proteins in same PDB: d2ozfa2, d2ozfa3
    automated match to d1g9oa_
18. Domain for 2pa1:
  - Domain d2pa1a1: 2pa1 A:1-82 [167096]
    Other proteins in same PDB: d2pa1a2, d2pa1a3
    automated match to d1vb7a_
    complexed with cl
19. Domain for 2pkt:
  - Domain d2pkta1: 2pkt A:1-86 [167208]
    Other proteins in same PDB: d2pkta2, d2pkta3
    automated match to d1rgwa_
    complexed with act, ca, cl, peg, pg4
20. Domains for 2vph:
  1. Domain d2vpha1: 2vph A:513-606 [168757]
    Other proteins in same PDB: d2vpha2, d2vphb2, d2vphb3
    automated match to d2cs5a1
  2. Domain d2vphb1: 2vph B:513-606 [168758]
    Other proteins in same PDB: d2vpha2, d2vphb2, d2vphb3
    automated match to d2cs5a1
21. Domains for 2vrf:
  1. Domain d2vrfa1: 2vrf A:112-200 [168768]
    Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
    automated match to d1qava_
    complexed with edo
  2. Domain d2vrfb1: 2vrf B:112-200 [168769]
    Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
    automated match to d1qava_
    complexed with edo
  3. Domain d2vrfc1: 2vrf C:112-200 [168770]
    Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
    automated match to d1qava_
    complexed with edo
  4. Domain d2vrfd1: 2vrf D:112-200 [168771]
    Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
    automated match to d1qava_
    complexed with edo
22. Domain for 2w4f:
  - Domain d2w4fa1: 2w4f A:725-815 [169058]
    Other proteins in same PDB: d2w4fa2
    automated match to d1x5qa1
    complexed with edo
23. Domain for 2x7z:
  - Domain d2x7za_: 2x7z A: [169928]
    automated match to d1qlca_
    complexed with imd, nh4; mutant
24. Domain for 2yt7:
  - Domain d2yt7a1: 2yt7 A:8-101 [244823]
    Other proteins in same PDB: d2yt7a2
    automated match to d1u38a1
25. Domain for 2yt8:
  - Domain d2yt8a1: 2yt8 A:8-94 [244824]
    Other proteins in same PDB: d2yt8a2
    automated match to d1y7na1
26. Domains for 3i4w:
  1. Domain d3i4wa_: 3i4w A: [178090]
    automated match to d1tp3a1
    complexed with act
  2. Domain d3i4wb_: 3i4w B: [178091]
    automated match to d1tp3a1
    complexed with act
  3. Domain d3i4wc_: 3i4w C: [178092]
    automated match to d1tp3a1
    complexed with act
  4. Domain d3i4wd_: 3i4w D: [178093]
    automated match to d1tp3a1
    complexed with act
27. Domain for 3k82:
  - Domain d3k82a_: 3k82 A: [212196]
    automated match to d1tp3a1
    complexed with epe, gol, po4
28. Domains for 3rl7:
  1. Domain d3rl7a_: 3rl7 A: [185006]
    Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
    automated match to d1zoka1
  2. Domain d3rl7b1: 3rl7 B:220-310 [185007]
    Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
    automated match to d1zoka1
  3. Domain d3rl7c_: 3rl7 C: [185008]
    Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
    automated match to d1zoka1
  4. Domain d3rl7d1: 3rl7 D:220-310 [185009]
    Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
    automated match to d1zoka1
  5. Domain d3rl7e_: 3rl7 E: [185010]
    Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
    automated match to d1zoka1
  6. Domain d3rl7f1: 3rl7 F:220-309 [185011]
    Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
    automated match to d1zoka1
29. Domains for 3rl8:
  1. Domain d3rl8a_: 3rl8 A: [185012]
    automated match to d1qlca_
  2. Domain d3rl8b_: 3rl8 B: [185013]
    automated match to d1qlca_
  3. Domain d3rl8c_: 3rl8 C: [185014]
    automated match to d1qlca_
  4. Domain d3rl8d_: 3rl8 D: [185015]
    automated match to d1qlca_
  5. Domain d3rl8e_: 3rl8 E: [185016]
    automated match to d1qlca_
30. Domain for 4jl7:
  - Domain d4jl7a1: 4jl7 A:11-95 [228457]
    Other proteins in same PDB: d4jl7a2, d4jl7a3
    automated match to d1i92a_
    complexed with cl
31. Domain for 4lmm:
  - Domain d4lmma1: 4lmm A:11-94 [236051]
    Other proteins in same PDB: d4lmma2, d4lmma3
    automated match to d4jl7a_
    complexed with acy, cl
32. Domain for 4mpa:
  - Domain d4mpaa1: 4mpa A:11-99 [236062]
    Other proteins in same PDB: d4mpaa2
    automated match to d4jl7a_
    complexed with acy, cl
33. Domain for 4n6x:
  - Domain d4n6xa1: 4n6x A:11-94 [236071]
    Other proteins in same PDB: d4n6xa2, d4n6xa3
    automated match to d4jl7a_
    complexed with cl
34. Domains for 4oeo:
  1. Domain d4oeoa1: 4oeo A:18-110 [268492]
    Other proteins in same PDB: d4oeoa2, d4oeob2, d4oeoc2
    automated match to d2h2ba_
    complexed with 12p, act, so4
  2. Domain d4oeob1: 4oeo B:18-110 [268495]
    Other proteins in same PDB: d4oeoa2, d4oeob2, d4oeoc2
    automated match to d2h2ba_
    complexed with 12p, act, so4
  3. Domain d4oeoc1: 4oeo C:18-110 [268496]
    Other proteins in same PDB: d4oeoa2, d4oeob2, d4oeoc2
    automated match to d2h2ba_
    complexed with 12p, act, so4
35. Domains for 4oep:
  1. Domain d4oepa1: 4oep A:18-110 [268502]
    Other proteins in same PDB: d4oepa2, d4oepa3, d4oepb2, d4oepb3
    automated match to d2rrma_
    complexed with 12p, act
  2. Domain d4oepb1: 4oep B:18-110 [268514]
    Other proteins in same PDB: d4oepa2, d4oepa3, d4oepb2, d4oepb3
    automated match to d2rrma_
    complexed with 12p, act
36. Domain for 4p0c:
  - Domain d4p0ca1: 4p0c A:9-95 [257379]
    Other proteins in same PDB: d4p0ca2
    automated match to d2ocsa_
    complexed with cl, scn
37. Domain for 4pqw:
  - Domain d4pqwa1: 4pqw A:11-94 [238314]
    Other proteins in same PDB: d4pqwa2, d4pqwa3
    automated match to d1i92a_
    complexed with cl, ni
38. Domains for 4q2o:
  1. Domain d4q2oa_: 4q2o A: [259471]
    automated match to d2eega_
  2. Domain d4q2ob_: 4q2o B: [259472]
    automated match to d2eega_
  3. Domain d4q2oc_: 4q2o C: [263610]
    automated match to d4q2oa_
  4. Domain d4q2od_: 4q2o D: [261254]
    automated match to d2eega_
  5. Domain d4q2oe_: 4q2o E: [263611]
    automated match to d4q2oa_
  6. Domain d4q2of_: 4q2o F: [263612]
    automated match to d4q2oa_
39. Domains for 4q3h:
  1. Domain d4q3ha_: 4q3h A: [257610]
    automated match to d2ozfa_
  2. Domain d4q3hb_: 4q3h B: [263629]
    automated match to d2ozfa_
40. Domains for 4yyx:
  1. Domain d4yyxa1: 4yyx A:18-120 [271160]
    Other proteins in same PDB: d4yyxa2, d4yyxb2
    automated match to d2h2ba_
    complexed with fmt
  2. Domain d4yyxb1: 4yyx B:18-120 [271161]
    Other proteins in same PDB: d4yyxa2, d4yyxb2
    automated match to d2h2ba_
    complexed with fmt
41. Domains for 6hks:
  1. Domain d6hksa_: 6hks A: [369117]
    automated match to d2vphb_
    complexed with iod
  2. Domain d6hksb_: 6hks B: [369116]
    automated match to d2vphb_
    complexed with iod
  3. Domain d6hksc_: 6hks C: [369144]
    automated match to d2vphb_
    complexed with iod
  4. Domain d6hksd_: 6hks D: [369122]
    automated match to d2vphb_
    complexed with iod
  5. Domain d6hkse_: 6hks E: [369115]
    automated match to d2vphb_
    complexed with iod
  6. Domain d6hksf_: 6hks F: [369121]
    automated match to d2vphb_
    complexed with iod
42. Domains for 6lca:
  1. Domain d6lcaa_: 6lca A: [395253]
    automated match to d3fy5a_
    complexed with so4
  2. Domain d6lcab_: 6lca B: [395252]
    automated match to d3fy5a_
    complexed with so4
  3. Domain d6lcac_: 6lca C: [395271]
    automated match to d3fy5a_
    complexed with so4
  4. Domain d6lcad_: 6lca D: [395299]
    automated match to d3fy5a_
    complexed with so4
  5. Domain d6lcae_: 6lca E: [395263]
    automated match to d3fy5a_
    complexed with so4
  6. Domain d6lcaf_: 6lca F: [395334]
    automated match to d3fy5a_
    complexed with so4
  7. Domain d6lcag_: 6lca G: [395254]
    automated match to d3fy5a_
    complexed with so4
  8. Domain d6lcah_: 6lca H: [395210]
    automated match to d3fy5a_
    complexed with so4
43. Domain for 6lcb:
  - Domain d6lcba_: 6lcb A: [395306]
    automated match to d3fy5a_
    complexed with e83, so4
44. Domains for 6nh9:
  1. Domain d6nh9a1: 6nh9 A:487-571 [378595]
    Other proteins in same PDB: d6nh9a2, d6nh9b2
    automated match to d1kwaa_
  2. Domain d6nh9b1: 6nh9 B:487-571 [378612]
    Other proteins in same PDB: d6nh9a2, d6nh9b2
    automated match to d1kwaa_
  3. Domain d6nh9c_: 6nh9 C: [378609]
    Other proteins in same PDB: d6nh9a2, d6nh9b2
    automated match to d1kwaa_
45. Domains for 6zbq:
  1. Domain d6zbqa1: 6zbq A:243-335 [407477]
    Other proteins in same PDB: d6zbqa2, d6zbqa3, d6zbqb2
    automated match to d2kawa_
    complexed with qe2
  2. Domain d6zbqb1: 6zbq B:245-335 [407556]
    Other proteins in same PDB: d6zbqa2, d6zbqa3, d6zbqb2
    automated match to d2kawa_
    complexed with qe2
46. Domains for 6zbz:
  1. Domain d6zbza1: 6zbz A:244-335 [407442]
    Other proteins in same PDB: d6zbza2, d6zbzb2, d6zbzc2, d6zbzd2
    automated match to d2kawa_
    complexed with edo, qe5
  2. Domain d6zbzb1: 6zbz B:244-335 [407406]
    Other proteins in same PDB: d6zbza2, d6zbzb2, d6zbzc2, d6zbzd2
    automated match to d2kawa_
    complexed with edo, qe5
  3. Domain d6zbzc1: 6zbz C:244-335 [407467]
    Other proteins in same PDB: d6zbza2, d6zbzb2, d6zbzc2, d6zbzd2
    automated match to d2kawa_
    complexed with edo, qe5
  4. Domain d6zbzd1: 6zbz D:246-335 [407486]
    Other proteins in same PDB: d6zbza2, d6zbzb2, d6zbzc2, d6zbzd2
    automated match to d2kawa_
    complexed with edo, qe5
47. Domains for 6zc3:
  1. Domain d6zc3a1: 6zc3 A:244-335 [407448]
    Other proteins in same PDB: d6zc3a2, d6zc3b2
    automated match to d2kawa_
    complexed with edo, jor
  2. Domain d6zc3b1: 6zc3 B:244-335 [407460]
    Other proteins in same PDB: d6zc3a2, d6zc3b2
    automated match to d2kawa_
    complexed with edo, jor
48. Domains for 6zc4:
  1. Domain d6zc4a1: 6zc4 A:243-335 [407436]
    Other proteins in same PDB: d6zc4a2, d6zc4a3, d6zc4b2
    automated match to d2kawa_
    complexed with qez
  2. Domain d6zc4b1: 6zc4 B:245-335 [407520]
    Other proteins in same PDB: d6zc4a2, d6zc4a3, d6zc4b2
    automated match to d2kawa_
    complexed with qez
49. Domain for 6zc6:
  - Domain d6zc6a1: 6zc6 A:243-335 [407495]
    Other proteins in same PDB: d6zc6a2
    automated match to d2kawa_
    complexed with edo, qen
50. Domains for 6zc7:
  1. Domain d6zc7a1: 6zc7 A:244-335 [407491]
    Other proteins in same PDB: d6zc7a2, d6zc7b2
    automated match to d2kawa_
    complexed with v31
  2. Domain d6zc7b1: 6zc7 B:243-335 [407529]
    Other proteins in same PDB: d6zc7a2, d6zc7b2
    automated match to d2kawa_
    complexed with v31
51. Domains for 6zc8:
  1. Domain d6zc8a1: 6zc8 A:243-335 [407578]
    Other proteins in same PDB: d6zc8a2, d6zc8b2
    automated match to d2kawa_
    complexed with qek
  2. Domain d6zc8b1: 6zc8 B:246-335 [407526]
    Other proteins in same PDB: d6zc8a2, d6zc8b2
    automated match to d2kawa_
    complexed with qek
Mouse (Mus musculus) [TaxId:10090] [189198] (6 PDB entries)
1. Domain for 1z86:
  - Domain d1z86a_: 1z86 A: [124690]
    automated match to d1qava_
2. Domain for 2kaw:
  - Domain d2kawa_: 2kaw A: [242441]
    automated match to d2reya_
    complexed with suz
3. Domain for 2rrm:
  - Domain d2rrma1: 2rrm A:1-93 [243760]
    Other proteins in same PDB: d2rrma2
    automated match to d2h2ba_
4. Domain for 2wl7:
  - Domain d2wl7a1: 2wl7 A:97-190 [169430]
    Other proteins in same PDB: d2wl7a2
    automated match to d1zoka1
    complexed with cl, so4
5. Domains for 3axa:
  1. Domain d3axaa_: 3axa A: [231813]
    automated match to d3axab_
  2. Domain d3axab_: 3axa B: [195552]
    automated match to d1xz9a1
6. Domains for 3o5n:
  1. Domain d3o5na_: 3o5n A: [182807]
    automated match to d1q3ob_
    complexed with br0
  2. Domain d3o5nb_: 3o5n B: [182808]
    automated match to d1q3ob_
    complexed with br0
  3. Domain d3o5nc_: 3o5n C: [182809]
    automated match to d1q3ob_
    complexed with br0
  4. Domain d3o5nd_: 3o5n D: [182810]
    automated match to d1q3ob_
    complexed with br0
  5. Domain d3o5ne_: 3o5n E: [182811]
    automated match to d1q3ob_
    complexed with br0
  6. Domain d3o5nf_: 3o5n F: [182812]
    automated match to d1q3ob_
    complexed with br0
  7. Domain d3o5ng_: 3o5n G: [182813]
    automated match to d1q3ob_
    complexed with br0
  8. Domain d3o5nh_: 3o5n H: [182814]
    automated match to d1q3ob_
    complexed with br0
Norway rat (Rattus norvegicus) [TaxId:10116] [186775] (10 PDB entries)
1. Domain for 1tp5:
  - Domain d1tp5a2: 1tp5 A:302-402 [119305]
    Other proteins in same PDB: d1tp5a3, d1tp5a4
    automated match to d1be9a_
2. Domains for 2awu:
  1. Domain d2awua_: 2awu A: [162931]
    automated match to d1qlca_
  2. Domain d2awub_: 2awu B: [162932]
    automated match to d1qlca_
3. Domains for 2aww:
  1. Domain d2awwa_: 2aww A: [162933]
    automated match to d1qlca_
  2. Domain d2awwb_: 2aww B: [162934]
    automated match to d1qlca_
4. Domains for 2awx:
  1. Domain d2awxa_: 2awx A: [162935]
    automated match to d1qlca_
    complexed with his
  2. Domain d2awxb_: 2awx B: [162936]
    automated match to d1qlca_
    complexed with his
5. Domain for 2fn5:
  - Domain d2fn5a1: 2fn5 A:4-94 [241868]
    Other proteins in same PDB: d2fn5a2
    automated match to d1wf8a1
6. Domains for 2g2l:
  1. Domain d2g2la_: 2g2l A: [164562]
    automated match to d1qlca_
  2. Domain d2g2lb_: 2g2l B: [164563]
    automated match to d1qlca_
7. Domains for 2i0l:
  1. Domain d2i0la_: 2i0l A: [165356]
    automated match to d1qlca_
  2. Domain d2i0lb_: 2i0l B: [165357]
    automated match to d1qlca_
8. Domains for 3gsl:
  1. Domain d3gsla1: 3gsl A:61-153 [246353]
    Other proteins in same PDB: d3gsla3
    automated match to d4h11a_
  2. Domain d3gsla2: 3gsl A:154-253 [246354]
    Other proteins in same PDB: d3gsla3
    automated match to d4h11a_
  3. Domain d3gslb1: 3gsl B:61-153 [246355]
    Other proteins in same PDB: d3gsla3
    automated match to d4h11a_
  4. Domain d3gslb2: 3gsl B:154-253 [246356]
    Other proteins in same PDB: d3gsla3
    automated match to d4h11a_
9. Domains for 4h11:
  1. Domain d4h11a1: 4h11 A:93-188 [202347]
    Other proteins in same PDB: d4h11a2, d4h11a3, d4h11b2, d4h11b3
    automated match to d4h11b_
    complexed with act, so4
  2. Domain d4h11b1: 4h11 B:93-188 [196742]
    Other proteins in same PDB: d4h11a2, d4h11a3, d4h11b2, d4h11b3
    automated match to d2wl7a_
    complexed with act, so4
10. Domains for 5ova:
  1. Domain d5ovaa1: 5ova A:580-674 [347318]
    Other proteins in same PDB: d5ovaa2, d5ovab2
    automated match to d3o5nf_
  2. Domain d5ovab1: 5ova B:580-674 [347284]
    Other proteins in same PDB: d5ovaa2, d5ovab2
    automated match to d3o5nf_

More info for Protein automated matches from b.36.1.1: PDZ domain

Timeline for Protein automated matches from b.36.1.1: PDZ domain:

Protein automated matches from b.36.1.1: PDZ domain first appeared in SCOPe 2.01
Protein automated matches from b.36.1.1: PDZ domain appears in SCOPe 2.07