SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
Superfamily d.15.1: Ubiquitin-like [54236] (11 families)
Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
Pfam PF00240
Protein automated matches [190118] (12 species)
not a true protein

Species:

African clawed frog (Xenopus laevis) [TaxId:8355] [255337] (1 PDB entry)
- Domains for 2kde:
  1. Domain d2kdeb_: 2kde B: [242465]
    automated match to d4auqc_
  2. Domain d2kdec_: 2kde C: [242466]
    automated match to d4auqc_
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189675] (2 PDB entries)
1. Domain for 3olm:
  - Domain d3olmd_: 3olm D: [183142]
    automated match to d1otrb_
2. Domains for 3qht:
  1. Domain d3qhta_: 3qht A: [184386]
    Other proteins in same PDB: d3qhtc_, d3qhtd_
    automated match to d1euvb_
    complexed with gol
  2. Domain d3qhtb_: 3qht B: [184387]
    Other proteins in same PDB: d3qhtc_, d3qhtd_
    automated match to d1euvb_
    complexed with gol
Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [193751] (7 PDB entries)
1. Domain for 3v60:
  - Domain d3v60a_: 3v60 A: [217679]
    Other proteins in same PDB: d3v60b1, d3v60b2
    automated match to d3v62d_
    protein/DNA complex; complexed with so4
2. Domain for 3v61:
  - Domain d3v61a_: 3v61 A: [227346]
    Other proteins in same PDB: d3v61b1, d3v61b2
    automated match to d3v62d_
    protein/DNA complex; complexed with ba, neq
3. Domains for 3v62:
  1. Domain d3v62a_: 3v62 A: [201201]
    Other proteins in same PDB: d3v62b1, d3v62b2, d3v62e1, d3v62e2
    automated match to d3v62d_
    protein/DNA complex; complexed with neq, so4
  2. Domain d3v62d_: 3v62 D: [193752]
    Other proteins in same PDB: d3v62b1, d3v62b2, d3v62e1, d3v62e2
    automated match to d1euvb_
    protein/DNA complex; complexed with neq, so4
4. Domain for 4q5e:
  - Domain d4q5eb_: 4q5e B: [258313]
    Other proteins in same PDB: d4q5ec1, d4q5ec2
    automated match to d3rula_
5. Domain for 4q5h:
  - Domain d4q5hb_: 4q5h B: [267268]
    Other proteins in same PDB: d4q5hc1, d4q5hc2
    automated match to d4q5eb_
    complexed with anp, mg
6. Domain for 5d6j:
  - Domain d5d6jb_: 5d6j B: [313292]
    automated match to d1l2na_
7. Domains for 5jne:
  1. Domain d5jnec_: 5jne C: [321052]
    Other proteins in same PDB: d5jneb1, d5jneb2, d5jned1, d5jned2, d5jnef_, d5jneh1, d5jneh2
    automated match to d1euvb_
    complexed with 6ln, gol, zn
  2. Domain d5jneg_: 5jne G: [321087]
    Other proteins in same PDB: d5jneb1, d5jneb2, d5jned1, d5jned2, d5jnef_, d5jneh1, d5jneh2
    automated match to d1euvb_
    complexed with 6ln, gol, zn
Cow (Bos taurus) [TaxId:9913] [197078] (6 PDB entries)
1. Domain for 1v80:
  - Domain d1v80a_: 1v80 A: [119867]
    automated match to d4auqc_
2. Domain for 1v81:
  - Domain d1v81a_: 1v81 A: [119868]
    automated match to d4auqc_
3. Domains for 3h1u:
  1. Domain d3h1ua_: 3h1u A: [246462]
    automated match to d4auqc_
    complexed with cd
  2. Domain d3h1ub_: 3h1u B: [246463]
    automated match to d4auqc_
    complexed with cd
4. Domain for 4bbn:
  - Domain d4bbnf_: 4bbn F: [197079]
    Other proteins in same PDB: d4bbna1, d4bbna2, d4bbnc_
    automated match to d3noba_
5. Domain for 5c7j:
  - Domain d5c7jd1: 5c7j D:2-73 [316536]
    Other proteins in same PDB: d5c7jc2, d5c7jd2
    automated match to d4bbnf_
6. Domains for 5o44:
  1. Domain d5o44b_: 5o44 B: [341277]
    Other proteins in same PDB: d5o44d_, d5o44f_
    automated match to d4bbnf_
    complexed with mg, so4
  2. Domain d5o44c_: 5o44 C: [341252]
    Other proteins in same PDB: d5o44d_, d5o44f_
    automated match to d4bbnf_
    complexed with mg, so4
Entamoeba (Entamoeba histolytica) [TaxId:5759] [193323] (2 PDB entries)
1. Domains for 4gsw:
  1. Domain d4gswa1: 4gsw A:4-75 [193324]
    Other proteins in same PDB: d4gswa2
    automated match to d3nheb_
    complexed with so4
  2. Domain d4gswb_: 4gsw B: [202298]
    Other proteins in same PDB: d4gswa2
    automated match to d4gswa_
    complexed with so4
2. Domain for 4gu2:
  - Domain d4gu2a_: 4gu2 A: [222166]
    automated match to d4gswa_

Human (Homo sapiens) [TaxId:9606] [189560] (94 PDB entries)

Domain for 1wyw:
- Domain d1wywb_: 1wyw B: [121468]
  Other proteins in same PDB: d1wywa_
  automated match to d1a5r__
  complexed with cl, mg, na
Domain for 1xqq:
- Domain d1xqqa_: 1xqq A: [122240]
  automated match to d4auqc_
Domains for 1y8r:
1. Domain d1y8rc_: 1y8r C: [122761]
  automated match to d1a5r__
  complexed with atp, mg, zn
2. Domain d1y8rf_: 1y8r F: [122762]
  automated match to d1a5r__
  complexed with atp, mg, zn
Domain for 1z5s:
- Domain d1z5sb_: 1z5s B: [124492]
  Other proteins in same PDB: d1z5sa_, d1z5sc1
  automated match to d1y8rc_
Domain for 2awt:
- Domain d2awta_: 2awt A: [127475]
  automated match to d1wz0a1
Domains for 2bgf:
1. Domain d2bgfa_: 2bgf A: [128476]
  automated match to d4auqc_
2. Domain d2bgfb_: 2bgf B: [128477]
  automated match to d4auqc_
Domain for 2bkr:
- Domain d2bkrb_: 2bkr B: [128711]
  Other proteins in same PDB: d2bkra_
  automated match to d1nddb_
Domain for 2c9w:
- Domain d2c9wb_: 2c9w B: [130145]
  Other proteins in same PDB: d2c9wa1, d2c9wa2, d2c9wc_
  automated match to d1lm8b_
  complexed with ni, so4
Domain for 2d07:
- Domain d2d07b_: 2d07 B: [131063]
  Other proteins in same PDB: d2d07a_
  automated match to d1wm2a_
Domain for 2den:
- Domain d2denb_: 2den B: [131432]
  Other proteins in same PDB: d2dena_
  automated match to d4auqc_
Domains for 2g4d:
1. Domain d2g4db_: 2g4d B: [134590]
  Other proteins in same PDB: d2g4da1, d2g4dc_
  automated match to d1y8rc_
  mutant
2. Domain d2g4dd_: 2g4d D: [134591]
  Other proteins in same PDB: d2g4da1, d2g4dc_
  automated match to d1y8rc_
  mutant
Domains for 2gbj:
1. Domain d2gbja_: 2gbj A: [164626]
  automated match to d1aara_
  mutant
2. Domain d2gbjb_: 2gbj B: [164627]
  automated match to d1aara_
  mutant
Domains for 2gbk:
1. Domain d2gbka_: 2gbk A: [164628]
  automated match to d1aara_
  mutant
2. Domain d2gbkb_: 2gbk B: [164629]
  automated match to d1aara_
  mutant
3. Domain d2gbkc_: 2gbk C: [164630]
  automated match to d1aara_
  mutant
4. Domain d2gbkd_: 2gbk D: [164631]
  automated match to d1aara_
  mutant
Domains for 2gbm:
1. Domain d2gbma_: 2gbm A: [164632]
  automated match to d1aara_
  complexed with ars; mutant
2. Domain d2gbmb_: 2gbm B: [164633]
  automated match to d1aara_
  complexed with ars; mutant
3. Domain d2gbmc_: 2gbm C: [164634]
  automated match to d1aara_
  complexed with ars; mutant
4. Domain d2gbmd_: 2gbm D: [164635]
  automated match to d1aara_
  complexed with ars; mutant
Domain for 2gbn:
- Domain d2gbna_: 2gbn A: [164636]
  automated match to d1aara_
  mutant
Domains for 2gbr:
1. Domain d2gbra_: 2gbr A: [164637]
  automated match to d1aara_
  complexed with cd; mutant
2. Domain d2gbrb_: 2gbr B: [164638]
  automated match to d1aara_
  complexed with cd; mutant
3. Domain d2gbrc_: 2gbr C: [164639]
  automated match to d1aara_
  complexed with cd; mutant
Domains for 2io1:
1. Domain d2io1b_: 2io1 B: [137537]
  Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
  automated match to d1wm2a_
2. Domain d2io1d_: 2io1 D: [137538]
  Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
  automated match to d1wm2a_
3. Domain d2io1f_: 2io1 F: [137539]
  Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
  automated match to d1wm2a_
Domain for 2izv:
- Domain d2izvb_: 2izv B: [137828]
  Other proteins in same PDB: d2izva1, d2izva2, d2izva3, d2izvc_
  automated match to d1lm8b_
  complexed with cl, edo, na
Domain for 2jz3:
- Domain d2jz3b_: 2jz3 B: [148243]
  Other proteins in same PDB: d2jz3c_
  automated match to d3zrcg_
Domain for 2klg:
- Domain d2klga_: 2klg A: [242552]
  automated match to d4auqc_
Domain for 2kx3:
- Domain d2kx3a_: 2kx3 A: [242686]
  automated match to d1v5ta_
  mutant
Domain for 2l0t:
- Domain d2l0ta_: 2l0t A: [242726]
  Other proteins in same PDB: d2l0tb1, d2l0tb2, d2l0tb3
  automated match to d4auqc_
Domain for 2lgd:
- Domain d2lgda_: 2lgd A: [242874]
  automated match to d1v5ta_
Domain for 2lj5:
- Domain d2lj5a_: 2lj5 A: [242898]
  automated match to d4auqc_
Domain for 2m0x:
- Domain d2m0xa_: 2m0x A: [243068]
  automated match to d4auqc_
Domain for 2m17:
- Domain d2m17a_: 2m17 A: [243074]
  automated match to d1v5ta_
Domain for 2mjb:
- Domain d2mjba_: 2mjb A: [243191]
  automated match to d4auqc_
Domain for 2n1w:
- Domain d2n1wa_: 2n1w A: [316152]
  automated match to d2awta_
Domain for 2nbd:
- Domain d2nbda1: 2nbd A:1-59 [317559]
  Other proteins in same PDB: d2nbda2
  automated match to d2k39a_
  mutant
Domain for 2nbe:
- Domain d2nbea1: 2nbe A:1-59 [317551]
  Other proteins in same PDB: d2nbea2
  automated match to d2k39a_
  mutant
Domain for 2nr2:
- Domain d2nr2a_: 2nr2 A: [138518]
  automated match to d4auqc_
Domains for 2o6v:
1. Domain d2o6vb_: 2o6v B: [138923]
  Other proteins in same PDB: d2o6va_, d2o6vc_, d2o6vd1, d2o6ve_, d2o6vg_, d2o6vh_
  automated match to d1aara_
  complexed with mes, so4
2. Domain d2o6vf_: 2o6v F: [138926]
  Other proteins in same PDB: d2o6va_, d2o6vc_, d2o6vd1, d2o6ve_, d2o6vg_, d2o6vh_
  automated match to d1aara_
  complexed with mes, so4
Domains for 2pe9:
1. Domain d2pe9a_: 2pe9 A: [149399]
  automated match to d4auqc_
2. Domain d2pe9b_: 2pe9 B: [149400]
  automated match to d4auqc_
Domains for 2pea:
1. Domain d2peaa_: 2pea A: [149401]
  automated match to d4auqc_
2. Domain d2peab_: 2pea B: [149402]
  automated match to d4auqc_
Domains for 2w9n:
1. Domain d2w9na1: 2w9n A:1-76 [244066]
  automated match to d4auqc_
  complexed with cl, zn
2. Domain d2w9na2: 2w9n A:77-149 [244067]
  automated match to d4auqc_
  complexed with cl, zn
Domain for 2wyq:
- Domain d2wyqa_: 2wyq A: [169703]
  automated match to d1p98a_
  complexed with so4
Domains for 2xk5:
1. Domain d2xk5a_: 2xk5 A: [244533]
  automated match to d4auqc_
  complexed with zn
2. Domain d2xk5b_: 2xk5 B: [244534]
  automated match to d4auqc_
  complexed with zn
Domains for 2y5b:
1. Domain d2y5bb1: 2y5b B:1-73 [239020]
  Other proteins in same PDB: d2y5ba_, d2y5be_
  automated match to d3nobh_
  complexed with so4, zn
2. Domain d2y5bb2: 2y5b B:76-152 [239021]
  Other proteins in same PDB: d2y5ba_, d2y5be_
  automated match to d3nobh_
  complexed with so4, zn
3. Domain d2y5bf1: 2y5b F:1-75 [239022]
  Other proteins in same PDB: d2y5ba_, d2y5be_
  automated match to d3nobh_
  complexed with so4, zn
4. Domain d2y5bf2: 2y5b F:76-152 [239023]
  Other proteins in same PDB: d2y5ba_, d2y5be_
  automated match to d3nobh_
  complexed with so4, zn
Domains for 2zcb:
1. Domain d2zcba_: 2zcb A: [154336]
  automated match to d1aara_
  complexed with zn
2. Domain d2zcbb_: 2zcb B: [161592]
  automated match to d1aara_
  complexed with zn
3. Domain d2zcbc_: 2zcb C: [161593]
  automated match to d1aara_
  complexed with zn
Domains for 2zvn:
1. Domain d2zvna1: 2zvn A:1-76 [244990]
  Other proteins in same PDB: d2zvnc3
  automated match to d4auqc_
2. Domain d2zvna2: 2zvn A:77-148 [244991]
  Other proteins in same PDB: d2zvnc3
  automated match to d4auqc_
3. Domain d2zvnc1: 2zvn C:1-76 [244992]
  Other proteins in same PDB: d2zvnc3
  automated match to d4auqc_
4. Domain d2zvnc2: 2zvn C:77-148 [244993]
  Other proteins in same PDB: d2zvnc3
  automated match to d4auqc_
5. Domain d2zvne1: 2zvn E:1-76 [244994]
  Other proteins in same PDB: d2zvnc3
  automated match to d4auqc_
6. Domain d2zvne2: 2zvn E:77-146 [244995]
  Other proteins in same PDB: d2zvnc3
  automated match to d4auqc_
7. Domain d2zvng1: 2zvn G:1-76 [244996]
  Other proteins in same PDB: d2zvnc3
  automated match to d4auqc_
8. Domain d2zvng2: 2zvn G:77-146 [244997]
  Other proteins in same PDB: d2zvnc3
  automated match to d4auqc_
Domains for 2zvo:
1. Domain d2zvoa1: 2zvo A:1-76 [244998]
  Other proteins in same PDB: d2zvoa3
  automated match to d4auqc_
2. Domain d2zvoa2: 2zvo A:77-148 [244999]
  Other proteins in same PDB: d2zvoa3
  automated match to d4auqc_
3. Domain d2zvog1: 2zvo G:1-76 [245000]
  Other proteins in same PDB: d2zvoa3
  automated match to d4auqc_
4. Domain d2zvog2: 2zvo G:77-146 [245001]
  Other proteins in same PDB: d2zvoa3
  automated match to d4auqc_
Domain for 3jsv:
- Domain d3jsva_: 3jsv A: [178793]
  Other proteins in same PDB: d3jsvb_
  automated match to d1aara_
Domain for 3k9p:
- Domain d3k9pb_: 3k9p B: [179217]
  Other proteins in same PDB: d3k9pa1, d3k9pa2
  automated match to d1aara_
Domains for 3nob:
1. Domain d3noba1: 3nob A:1-75 [182440]
  Other proteins in same PDB: d3noba2, d3nobc2, d3nobd2, d3nobe2, d3nobh2
  automated match to d1aara_
  complexed with so4
2. Domain d3nobb_: 3nob B: [182441]
  Other proteins in same PDB: d3noba2, d3nobc2, d3nobd2, d3nobe2, d3nobh2
  automated match to d1aara_
  complexed with so4
3. Domain d3nobc1: 3nob C:1-74 [182442]
  Other proteins in same PDB: d3noba2, d3nobc2, d3nobd2, d3nobe2, d3nobh2
  automated match to d1aara_
  complexed with so4
4. Domain d3nobd1: 3nob D:1-74 [182443]
  Other proteins in same PDB: d3noba2, d3nobc2, d3nobd2, d3nobe2, d3nobh2
  automated match to d1aara_
  complexed with so4
5. Domain d3nobe1: 3nob E:1-74 [182444]
  Other proteins in same PDB: d3noba2, d3nobc2, d3nobd2, d3nobe2, d3nobh2
  automated match to d1aara_
  complexed with so4
6. Domain d3nobf_: 3nob F: [182445]
  Other proteins in same PDB: d3noba2, d3nobc2, d3nobd2, d3nobe2, d3nobh2
  automated match to d1aara_
  complexed with so4
7. Domain d3nobg_: 3nob G: [182446]
  Other proteins in same PDB: d3noba2, d3nobc2, d3nobd2, d3nobe2, d3nobh2
  automated match to d1aara_
  complexed with so4
8. Domain d3nobh1: 3nob H:1-76 [182447]
  Other proteins in same PDB: d3noba2, d3nobc2, d3nobd2, d3nobe2, d3nobh2
  automated match to d1aara_
  complexed with so4
Domain for 3phd:
- Domain d3phdf_: 3phd F: [248503]
  automated match to d4auqc_
  complexed with zn
Domains for 3pse:
1. Domain d3pseb1: 3pse B:4-78 [233268]
  automated match to d1z2ma1
  complexed with 3cn, gol
2. Domain d3pseb2: 3pse B:79-156 [233269]
  automated match to d1z2ma2
  complexed with 3cn, gol
Domains for 3r66:
1. Domain d3r66c2: 3r66 C:79-154 [233411]
  Other proteins in same PDB: d3r66a_, d3r66b_, d3r66c1, d3r66d1
  automated match to d1z2ma2
2. Domain d3r66d2: 3r66 D:79-154 [233412]
  Other proteins in same PDB: d3r66a_, d3r66b_, d3r66c1, d3r66d1
  automated match to d1z2ma2
Domains for 3rt3:
1. Domain d3rt3b1: 3rt3 B:3-78 [233498]
  Other proteins in same PDB: d3rt3c_
  automated match to d1z2ma1
  complexed with sin
2. Domain d3rt3b2: 3rt3 B:79-155 [233499]
  Other proteins in same PDB: d3rt3c_
  automated match to d1z2ma2
  complexed with sin
Domains for 3rzw:
1. Domain d3rzwc_: 3rzw C: [185230]
  Other proteins in same PDB: d3rzwa_, d3rzwb_
  automated match to d1a5ra_
  complexed with gol
2. Domain d3rzwd_: 3rzw D: [185231]
  Other proteins in same PDB: d3rzwa_, d3rzwb_
  automated match to d1a5ra_
  complexed with gol
Domains for 3sdl:
1. Domain d3sdlc2: 3sdl C:79-154 [239725]
  Other proteins in same PDB: d3sdla_, d3sdlb_, d3sdlc1, d3sdld1
  automated match to d3r66c2
2. Domain d3sdld2: 3sdl D:79-154 [239727]
  Other proteins in same PDB: d3sdla_, d3sdlb_, d3sdlc1, d3sdld1
  automated match to d3r66c2
Domain for 3uin:
- Domain d3uinb_: 3uin B: [200985]
  Other proteins in same PDB: d3uina_, d3uinc_
  automated match to d2io0b_
Domain for 3uio:
- Domain d3uiob_: 3uio B: [200986]
  Other proteins in same PDB: d3uioa_, d3uioc_
  automated match to d2io0b_
Domains for 3zkj:
1. Domain d3zkjc_: 3zkj C: [201328]
  Other proteins in same PDB: d3zkjb_, d3zkje_
  complexed with cl, edo, peg
2. Domain d3zkjf_: 3zkj F: [201330]
  Other proteins in same PDB: d3zkjb_, d3zkje_
  complexed with cl, edo, peg
Domains for 3znz:
1. Domain d3znzb1: 3znz B:1-76 [250808]
  automated match to d4auqc_
  complexed with so4
2. Domain d3znzb2: 3znz B:77-146 [250809]
  automated match to d4auqc_
  complexed with so4
Domain for 3zo5:
- Domain d3zo5b1: 3zo5 B:16-95 [236508]
  Other proteins in same PDB: d3zo5a_, d3zo5b2
  automated match to d2ckhb1
Domains for 4ap4:
1. Domain d4ap4c_: 4ap4 C: [194912]
  Other proteins in same PDB: d4ap4b1, d4ap4b2, d4ap4e_
  automated match to d3nobh_
  complexed with zn
2. Domain d4ap4f_: 4ap4 F: [194913]
  Other proteins in same PDB: d4ap4b1, d4ap4b2, d4ap4e_
  automated match to d3nobh_
  complexed with zn
Domains for 4auq:
1. Domain d4auqc1: 4auq C:1-76 [194816]
  Other proteins in same PDB: d4auqa_, d4auqc2, d4auqd_
  automated match to d3nheb_
  complexed with zn
2. Domain d4auqf_: 4auq F: [194818]
  Other proteins in same PDB: d4auqa_, d4auqc2, d4auqd_
  automated match to d3nheb_
  complexed with zn

Domain for 4b95:

Domain d4b95j_: 4b95 J: [193438]
Other proteins in same PDB: d4b95a_, d4b95b1, d4b95b2, d4b95c_, d4b95d_, d4b95e1, d4b95e2, d4b95f_, d4b95g_, d4b95h1, d4b95h2, d4b95i_, d4b95k1, d4b95k2, d4b95l_
automated match to d1lm8b_
complexed with act, uck

Domain for 4bkg:
- Domain d4bkga_: 4bkg A: [251272]
  automated match to d2io0b_
Domains for 4boz:
1. Domain d4bozb_: 4boz B: [251292]
  automated match to d4auqc_
  complexed with gol
2. Domain d4bozc_: 4boz C: [251293]
  automated match to d4auqc_
  complexed with gol
3. Domain d4boze_: 4boz E: [251294]
  automated match to d4auqc_
  complexed with gol
Domains for 4dwf:
1. Domain d4dwfa1: 4dwf A:13-90 [195743]
  Other proteins in same PDB: d4dwfa2, d4dwfb2
  automated match to d1wx9a1
  complexed with so4
2. Domain d4dwfb1: 4dwf B:13-90 [201746]
  Other proteins in same PDB: d4dwfa2, d4dwfb2
  automated match to d4dwfa_
  complexed with so4
Domains for 4eew:
1. Domain d4eewa_: 4eew A: [201835]
  automated match to d4eewb_
2. Domain d4eewb_: 4eew B: [195625]
  automated match to d1wx9a1
Domain for 4hjk:
- Domain d4hjka1: 4hjk A:1-76 [194297]
  Other proteins in same PDB: d4hjka2
  automated match to d3nheb_
  complexed with po4
Domains for 4hk2:
1. Domain d4hk2a1: 4hk2 A:1-72 [202442]
  Other proteins in same PDB: d4hk2a2, d4hk2b2, d4hk2c2, d4hk2d2
  automated match to d4hk2c_
  complexed with so4
2. Domain d4hk2b1: 4hk2 B:1-72 [202443]
  Other proteins in same PDB: d4hk2a2, d4hk2b2, d4hk2c2, d4hk2d2
  automated match to d4hk2c_
  complexed with so4
3. Domain d4hk2c1: 4hk2 C:1-73 [193362]
  Other proteins in same PDB: d4hk2a2, d4hk2b2, d4hk2c2, d4hk2d2
  automated match to d3nobh_
  complexed with so4
4. Domain d4hk2d1: 4hk2 D:1-74 [202444]
  Other proteins in same PDB: d4hk2a2, d4hk2b2, d4hk2c2, d4hk2d2
  automated match to d4hk2c_
  complexed with so4
Domains for 4icu:
1. Domain d4icua_: 4icu A: [256776]
  automated match to d1wjna_
2. Domain d4icub_: 4icu B: [262716]
  automated match to d1wjna_
3. Domain d4icuc_: 4icu C: [262717]
  automated match to d1wjna_
4. Domain d4icud_: 4icu D: [262718]
  automated match to d1wjna_
Domain for 4icv:
- Domain d4icva_: 4icv A: [266407]
  automated match to d1wjna_
  complexed with pr
Domains for 4msm:
1. Domain d4msmb_: 4msm B: [266767]
  automated match to d3dbhi_
  complexed with edo, po4, zn; mutant
2. Domain d4msmd_: 4msm D: [266768]
  automated match to d3dbhi_
  complexed with edo, po4, zn; mutant
Domains for 4msq:
1. Domain d4msqb1: 4msq B:1-76 [266771]
  Other proteins in same PDB: d4msqb2
  automated match to d3dbhi_
  complexed with edo, po4, zn
2. Domain d4msqd_: 4msq D: [266772]
  Other proteins in same PDB: d4msqb2
  automated match to d3dbhi_
  complexed with edo, po4, zn
Domains for 4pig:
1. Domain d4piga_: 4pig A: [263493]
  automated match to d4pigd_
  complexed with ca, cl, na; mutant
2. Domain d4pigb_: 4pig B: [263494]
  automated match to d4pigd_
  complexed with ca, cl, na; mutant
3. Domain d4pigc_: 4pig C: [263495]
  automated match to d4pigd_
  complexed with ca, cl, na; mutant
4. Domain d4pigd_: 4pig D: [260735]
  automated match to d4auqc_
  complexed with ca, cl, na; mutant
Domains for 4pih:
1. Domain d4piha_: 4pih A: [260737]
  automated match to d4auqc_
  complexed with ca, cl; mutant
2. Domain d4pihb_: 4pih B: [263496]
  automated match to d4piha_
  complexed with ca, cl; mutant
Domains for 4pij:
1. Domain d4pija_: 4pij A: [260736]
  automated match to d3rula_
  complexed with gol, so4; mutant
2. Domain d4pijb_: 4pij B: [263497]
  automated match to d4pija_
  complexed with gol, so4; mutant
Domain for 4pqt:
- Domain d4pqtb_: 4pqt B: [267207]
  automated match to d3dbhi_
  complexed with edo, zn
Domain for 4r62:
- Domain d4r62b1: 4r62 B:1-76 [276571]
  Other proteins in same PDB: d4r62a_, d4r62b2
  automated match to d2murb_
  complexed with act
Domains for 4s1z:
1. Domain d4s1za_: 4s1z A: [271239]
  automated match to d2murb_
  complexed with zn
2. Domain d4s1zb_: 4s1z B: [271237]
  automated match to d2murb_
  complexed with zn
3. Domain d4s1zc_: 4s1z C: [271238]
  automated match to d2murb_
  complexed with zn
4. Domain d4s1zd_: 4s1z D: [271236]
  automated match to d2murb_
  complexed with zn
5. Domain d4s1ze_: 4s1z E: [271235]
  automated match to d2murb_
  complexed with zn
Domains for 4v3k:
1. Domain d4v3kb1: 4v3k B:1-76 [271276]
  Other proteins in same PDB: d4v3ka_, d4v3kb2, d4v3kd_, d4v3ke2
  automated match to d3dbhi_
  complexed with cl, edo, zn
2. Domain d4v3ke1: 4v3k E:1-76 [271279]
  Other proteins in same PDB: d4v3ka_, d4v3kb2, d4v3kd_, d4v3ke2
  automated match to d3dbhi_
  complexed with cl, edo, zn
Domains for 4v3l:
1. Domain d4v3lb1: 4v3l B:1-76 [271283]
  Other proteins in same PDB: d4v3la_, d4v3lb2, d4v3ld2
  automated match to d3dbhi_
  complexed with edo, zn
2. Domain d4v3ld1: 4v3l D:1-71 [271284]
  Other proteins in same PDB: d4v3la_, d4v3lb2, d4v3ld2
  automated match to d3dbhi_
  complexed with edo, zn
Domain for 4wjn:
- Domain d4wjna_: 4wjn A: [269067]
  automated match to d1y8rc_
Domain for 4wjo:
- Domain d4wjoa_: 4wjo A: [269066]
  automated match to d1y8rc_
Domains for 5af4:
1. Domain d5af4a_: 5af4 A: [270195]
  automated match to d2murb_
  complexed with gol, so4
2. Domain d5af4b_: 5af4 B: [270190]
  automated match to d2murb_
  complexed with gol, so4
3. Domain d5af4c_: 5af4 C: [270193]
  automated match to d2murb_
  complexed with gol, so4
4. Domain d5af4d_: 5af4 D: [270198]
  automated match to d2murb_
  complexed with gol, so4
5. Domain d5af4e_: 5af4 E: [270197]
  automated match to d2murb_
  complexed with gol, so4
6. Domain d5af4f_: 5af4 F: [270192]
  automated match to d2murb_
  complexed with gol, so4
7. Domain d5af4g_: 5af4 G: [270191]
  automated match to d2murb_
  complexed with gol, so4
8. Domain d5af4h_: 5af4 H: [270194]
  automated match to d2murb_
  complexed with gol, so4
Domain for 5af5:
- Domain d5af5a_: 5af5 A: [270196]
  automated match to d3rula_
Domain for 5b7a:
- Domain d5b7aa_: 5b7a A: [335150]
  automated match to d2n1va_
Domain for 5c7j:
- Domain d5c7jc1: 5c7j C:2-73 [316516]
  Other proteins in same PDB: d5c7jc2, d5c7jd2
  automated match to d4bbnf_
Domain for 5ghb:
- Domain d5ghba_: 5ghb A: [335131]
  automated match to d2awta_
Domain for 5ghc:
- Domain d5ghca_: 5ghc A: [335101]
  automated match to d2awta_
Domain for 5ghd:
- Domain d5ghda_: 5ghd A: [335142]
  automated match to d2n1va_
Domain for 5hpk:
- Domain d5hpkb1: 5hpk B:2-77 [316731]
  Other proteins in same PDB: d5hpka1, d5hpka2, d5hpkb2
  automated match to d3rula_
Domains for 5hpl:
1. Domain d5hplc1: 5hpl C:2-77 [316735]
  Other proteins in same PDB: d5hplc2, d5hpld2
  automated match to d4bbnf_
2. Domain d5hpld1: 5hpl D:2-77 [316741]
  Other proteins in same PDB: d5hplc2, d5hpld2
  automated match to d4bbnf_
Domain for 5ifr:
- Domain d5ifrb_: 5ifr B: [317284]
  Other proteins in same PDB: d5ifra1, d5ifra2
  automated match to d4bbnf_
  complexed with gol
Domain for 5j26:
- Domain d5j26b_: 5j26 B: [327174]
  Other proteins in same PDB: d5j26a1, d5j26a2
  automated match to d4k1rb_
Domain for 5oxh:
- Domain d5oxha_: 5oxh A: [341849]
  automated match to d2k39a_
  complexed with so4; mutant
Domains for 5oxi:
1. Domain d5oxia_: 5oxi A: [341859]
  automated match to d2k39a_
  complexed with so4; mutant
2. Domain d5oxib_: 5oxi B: [341847]
  automated match to d2k39a_
  complexed with so4; mutant
Domain for 5tvq:
- Domain d5tvqb_: 5tvq B: [339636]
  automated match to d2awta_
  protein/DNA complex; complexed with act, ca
Domain for 5v69:
- Domain d5v69b_: 5v69 B: [334325]
  Other proteins in same PDB: d5v69a1, d5v69a2
  automated match to d4bbnf_
  complexed with cl, na, pgo, zn
Domains for 5vzw:
1. Domain d5vzwc1: 5vzw C:1-76 [337633]
  Other proteins in same PDB: d5vzwa_, d5vzwb_, d5vzwc2, d5vzwd2
  automated match to d4k1rb_
  complexed with zn
2. Domain d5vzwd1: 5vzw D:1-76 [337724]
  Other proteins in same PDB: d5vzwa_, d5vzwb_, d5vzwc2, d5vzwd2
  automated match to d4k1rb_
  complexed with zn

Mouse (Mus musculus) [TaxId:10090] [187278] (3 PDB entries)
1. Domains for 2znv:
  1. Domain d2znvb_: 2znv B: [154707]
    Other proteins in same PDB: d2znva_, d2znvc_, d2znvd_, d2znvf_
    automated match to d1aara_
    complexed with edo, zn
  2. Domain d2znve_: 2znv E: [154709]
    Other proteins in same PDB: d2znva_, d2znvc_, d2znvd_, d2znvf_
    automated match to d1aara_
    complexed with edo, zn
2. Domain for 3b1l:
  - Domain d3b1lx_: 3b1l X: [195016]
    automated match to d2zeqa_
    mutant
3. Domain for 4jgh:
  - Domain d4jghb_: 4jgh B: [252933]
    Other proteins in same PDB: d4jgha1, d4jgha2, d4jgha3, d4jghc_, d4jghd1, d4jghd2
    automated match to d3zrcg_
Musca domestica [TaxId:7370] [341246] (1 PDB entry)
- Domains for 5o44:
  1. Domain d5o44a_: 5o44 A: [341247]
    Other proteins in same PDB: d5o44d_, d5o44f_
    automated match to d3wwqa_
    complexed with mg, so4
  2. Domain d5o44e_: 5o44 E: [341312]
    Other proteins in same PDB: d5o44d_, d5o44f_
    automated match to d3wwqa_
    complexed with mg, so4
Naegleria gruberi [TaxId:5762] [334686] (1 PDB entry)
- Domains for 5vix:
  1. Domain d5vixa1: 5vix A:1-76 [334687]
    Other proteins in same PDB: d5vixa3
    automated match to d2k39a_
    complexed with no3
  2. Domain d5vixa2: 5vix A:77-150 [334688]
    Other proteins in same PDB: d5vixa3
    automated match to d2k39a_
    complexed with no3
Paramecium tetraurelia strain d4-2 [TaxId:412030] [161334] (1 PDB entry)
- Domain for 2jvc:
  - Domain d2jvca1: 2jvc A:7-76 [148222]
    Other proteins in same PDB: d2jvca2
    automatically matched to d1yiwa1
Pseudozyma antarctica [TaxId:84753] [329779] (1 PDB entry)
- Domains for 5knl:
  1. Domain d5knlb_: 5knl B: [329783]
    Other proteins in same PDB: d5knlc1, d5knlc2, d5knlf1, d5knlf2
    automated match to d3wwqa_
    complexed with so4
  2. Domain d5knle_: 5knl E: [329780]
    Other proteins in same PDB: d5knlc1, d5knlc2, d5knlf1, d5knlf2
    automated match to d3wwqa_
    complexed with so4
Schizosaccharomyces pombe [TaxId:284812] [196615] (2 PDB entries)
1. Domain for 4ii2:
  - Domain d4ii2b1: 4ii2 B:1-76 [196616]
    Other proteins in same PDB: d4ii2b2, d4ii2c1, d4ii2c2
    automated match to d3cmmb_
    complexed with atp, edo, mg, pg0, so4
2. Domains for 4ii3:
  1. Domain d4ii3b_: 4ii3 B: [223182]
    automated match to d3dbhi_
    complexed with atp, ca, mg
  2. Domain d4ii3d_: 4ii3 D: [223183]
    automated match to d3dbhi_
    complexed with atp, ca, mg

More info for Protein automated matches from d.15.1.1: Ubiquitin-related

Timeline for Protein automated matches from d.15.1.1: Ubiquitin-related:

Protein automated matches from d.15.1.1: Ubiquitin-related first appeared in SCOPe 2.01
Protein automated matches from d.15.1.1: Ubiquitin-related appears in SCOPe 2.05
Protein automated matches from d.15.1.1: Ubiquitin-related appears in SCOPe 2.07
Protein automated matches from d.15.1.1: Ubiquitin-related appears in the current release, SCOPe 2.08