PDB entry 2o6v

View 2o6v on RCSB PDB site
Description: Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH
Class: signaling protein
Keywords: ubiquitin, tetraubiquitin, polyubiquitin, Lys48-linked, SIGNALING PROTEIN
Deposited on 2006-12-08, released 2007-02-13
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-06-27, with a file datestamp of 2012-06-22.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.222
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2o6va_
  • Chain 'B':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62988
      • engineered (47)
      • engineered (62)
    Domains in SCOPe 2.06: d2o6vb_
  • Chain 'C':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2o6vc_
  • Chain 'D':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62988
      • engineered (47)
      • engineered (62)
    Domains in SCOPe 2.06: d2o6vd1
  • Chain 'E':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2o6ve_
  • Chain 'F':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62988 (0-75)
      • engineered (47)
      • engineered (62)
    Domains in SCOPe 2.06: d2o6vf_
  • Chain 'G':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2o6vg_
  • Chain 'H':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62988 (Start-75)
      • engineered (47)
      • engineered (62)
    Domains in SCOPe 2.06: d2o6vh_
  • Heterogens: SO4, MES, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2o6vA (A:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2o6vA (A:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrg
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2o6vB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqrestlhlvlrlrgg
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2o6vC (C:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2o6vD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagrqledgrtlsdyn
    iqrestlhlvlrlrgg
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >2o6vE (E:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2o6vE (E:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrg
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2o6vF (F:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqrestlhlvlrlrgg
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2o6vG (G:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >2o6vH (H:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagrqledgrtlsdyn
    iqrestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2o6vH (H:)
    qifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagrqledgrtlsdyni
    qrestlhlvlrlrgg