PDB entry 4v3l
View 4v3l on RCSB PDB site
Description: RNF38-UB-UbcH5B-Ub complex
Class: ligase
Keywords: ligase, ubiquitin, ring e3, e2
Deposited on
2014-10-20, released
2015-04-08
The last revision prior to the SCOPe 2.06 freeze date was dated
2015-04-29, with a file datestamp of
2015-04-24.
Experiment type: XRAY
Resolution: 1.53 Å
R-factor: N/A
AEROSPACI score: 0.48
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ubiquitin-conjugating enzyme e2 d2
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4v3la_ - Chain 'B':
Compound: Polyubiquitin-C
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4v3lb1, d4v3lb2 - Chain 'C':
Compound: e3 ubiquitin-protein ligase rnf38
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Polyubiquitin-C
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4v3ld1, d4v3ld2 - Heterogens: EDO, ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>4v3lA (A:)
alkrihkelndlardppaqcsagpvgddmfhwqatimgpndspyqggvffltihfptdyp
fkppkvafttriyhpninsngsikldilrsqwspaltiskvllsicsllcdpnpddplvp
eiariyktdrekynriarewtqkyam
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4v3lB (B:)
gsggsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrt
lsdyniqkestlhlvlrlrgg
Sequence, based on observed residues (ATOM records): (download)
>4v3lB (B:)
smqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrlrgg
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4v3lD (D:)
gsggsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrt
lsdyniqkestlhlvlrlrgg
Sequence, based on observed residues (ATOM records): (download)
>4v3lD (D:)
smqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvl