Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1892544Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 1892545Superfamily d.15.1: Ubiquitin-like [54236] (9 families) (S)
  5. 1892546Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
    Pfam PF00240
  6. 1893246Protein automated matches [190118] (9 species)
    not a true protein

Species:

  1. 1893247African clawed frog (Xenopus laevis) [TaxId:8355] [255337] (1 PDB entry)
  2. 1893250Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189675] (2 PDB entries)
    1. Domain for 3olm:
    2. Domains for 3qht:
      1. 1893252Domain d3qhta_: 3qht A: [184386]
        Other proteins in same PDB: d3qhtc_, d3qhtd_
        automated match to d1euvb_
        complexed with gol
      2. 1893253Domain d3qhtb_: 3qht B: [184387]
        Other proteins in same PDB: d3qhtc_, d3qhtd_
        automated match to d1euvb_
        complexed with gol
  3. 1893254Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [193751] (5 PDB entries)
    1. Domain for 3v60:
    2. Domain for 3v61:
    3. Domains for 3v62:
      1. 1893258Domain d3v62a_: 3v62 A: [201201]
        Other proteins in same PDB: d3v62b1, d3v62b2, d3v62e1, d3v62e2
        automated match to d3v62d_
        protein/DNA complex; complexed with neq, so4
      2. 1893259Domain d3v62d_: 3v62 D: [193752]
        Other proteins in same PDB: d3v62b1, d3v62b2, d3v62e1, d3v62e2
        automated match to d1euvb_
        protein/DNA complex; complexed with neq, so4
    4. Domain for 4q5e:
    5. Domain for 4q5h:
  4. 1893261Cow (Bos taurus) [TaxId:9913] [197078] (4 PDB entries)
    1. Domain for 1v80:
    2. Domain for 1v81:
    3. Domains for 3h1u:
      1. 1893263Domain d3h1ua_: 3h1u A: [246462]
        automated match to d4auqc_
        complexed with cd
      2. 1893264Domain d3h1ub_: 3h1u B: [246463]
        automated match to d4auqc_
        complexed with cd
    4. Domain for 4bbn:
  5. 1893267Entamoeba (Entamoeba histolytica) [TaxId:5759] [193323] (2 PDB entries)
    1. Domains for 4gsw:
      1. 1893269Domain d4gswa_: 4gsw A: [193324]
        automated match to d3nheb_
        complexed with so4
      2. 1893270Domain d4gswb_: 4gsw B: [202298]
        automated match to d4gswa_
        complexed with so4
    2. Domain for 4gu2:
  6. 1893271Human (Homo sapiens) [TaxId:9606] [189560] (79 PDB entries)
    1. Domain for 1wyw:
    2. Domain for 1xqq:
    3. Domains for 1y8r:
      1. 1893379Domain d1y8rc_: 1y8r C: [122761]
        automated match to d1a5r__
        complexed with atp, mg, zn
      2. 1893380Domain d1y8rf_: 1y8r F: [122762]
        automated match to d1a5r__
        complexed with atp, mg, zn
    4. Domain for 1z5s:
    5. Domain for 2awt:
    6. Domains for 2bgf:
      1. 1893420Domain d2bgfa_: 2bgf A: [128476]
        automated match to d4auqc_
      2. 1893421Domain d2bgfb_: 2bgf B: [128477]
        automated match to d4auqc_
    7. Domain for 2bkr:
    8. Domain for 2c9w:
    9. Domain for 2d07:
    10. Domain for 2den:
    11. Domains for 2g4d:
      1. 1893390Domain d2g4db_: 2g4d B: [134590]
        Other proteins in same PDB: d2g4da1, d2g4dc_
        automated match to d1y8rc_
        mutant
      2. 1893391Domain d2g4dd_: 2g4d D: [134591]
        Other proteins in same PDB: d2g4da1, d2g4dc_
        automated match to d1y8rc_
        mutant
    12. Domains for 2gbj:
      1. 1893274Domain d2gbja_: 2gbj A: [164626]
        automated match to d1aara_
        mutant
      2. 1893275Domain d2gbjb_: 2gbj B: [164627]
        automated match to d1aara_
        mutant
    13. Domains for 2gbk:
      1. 1893321Domain d2gbka_: 2gbk A: [164628]
        automated match to d1aara_
        mutant
      2. 1893322Domain d2gbkb_: 2gbk B: [164629]
        automated match to d1aara_
        mutant
      3. 1893323Domain d2gbkc_: 2gbk C: [164630]
        automated match to d1aara_
        mutant
      4. 1893324Domain d2gbkd_: 2gbk D: [164631]
        automated match to d1aara_
        mutant
    14. Domains for 2gbm:
      1. 1893284Domain d2gbma_: 2gbm A: [164632]
        automated match to d1aara_
        complexed with ars; mutant
      2. 1893285Domain d2gbmb_: 2gbm B: [164633]
        automated match to d1aara_
        complexed with ars; mutant
      3. 1893286Domain d2gbmc_: 2gbm C: [164634]
        automated match to d1aara_
        complexed with ars; mutant
      4. 1893287Domain d2gbmd_: 2gbm D: [164635]
        automated match to d1aara_
        complexed with ars; mutant
    15. Domain for 2gbn:
    16. Domains for 2gbr:
      1. 1893318Domain d2gbra_: 2gbr A: [164637]
        automated match to d1aara_
        complexed with cd; mutant
      2. 1893319Domain d2gbrb_: 2gbr B: [164638]
        automated match to d1aara_
        complexed with cd; mutant
      3. 1893320Domain d2gbrc_: 2gbr C: [164639]
        automated match to d1aara_
        complexed with cd; mutant
    17. Domains for 2io1:
      1. 1893354Domain d2io1b_: 2io1 B: [137537]
        Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
        automated match to d1wm2a_
      2. 1893355Domain d2io1d_: 2io1 D: [137538]
        Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
        automated match to d1wm2a_
      3. 1893356Domain d2io1f_: 2io1 F: [137539]
        Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
        automated match to d1wm2a_
    18. Domain for 2izv:
    19. Domain for 2jz3:
    20. Domain for 2klg:
    21. Domain for 2kx3:
    22. Domain for 2l0t:
    23. Domain for 2lgd:
    24. Domain for 2lj5:
    25. Domain for 2m0x:
    26. Domain for 2m17:
    27. Domain for 2mjb:
    28. Domain for 2nr2:
    29. Domains for 2o6v:
      1. 1893335Domain d2o6vb_: 2o6v B: [138923]
        Other proteins in same PDB: d2o6va_, d2o6vc_, d2o6vd1, d2o6ve_, d2o6vg_, d2o6vh_
        automated match to d1aara_
        complexed with mes, so4
      2. 1893336Domain d2o6vf_: 2o6v F: [138926]
        Other proteins in same PDB: d2o6va_, d2o6vc_, d2o6vd1, d2o6ve_, d2o6vg_, d2o6vh_
        automated match to d1aara_
        complexed with mes, so4
    30. Domains for 2pe9:
      1. 1893413Domain d2pe9a_: 2pe9 A: [149399]
        automated match to d4auqc_
      2. 1893414Domain d2pe9b_: 2pe9 B: [149400]
        automated match to d4auqc_
    31. Domains for 2pea:
      1. 1893415Domain d2peaa_: 2pea A: [149401]
        automated match to d4auqc_
      2. 1893416Domain d2peab_: 2pea B: [149402]
        automated match to d4auqc_
    32. Domains for 2w9n:
      1. 1893350Domain d2w9na1: 2w9n A:1-76 [244066]
        automated match to d4auqc_
        complexed with cl, zn
      2. 1893351Domain d2w9na2: 2w9n A:77-149 [244067]
        automated match to d4auqc_
        complexed with cl, zn
    33. Domain for 2wyq:
    34. Domains for 2xk5:
      1. 1893392Domain d2xk5a_: 2xk5 A: [244533]
        automated match to d4auqc_
        complexed with zn
      2. 1893393Domain d2xk5b_: 2xk5 B: [244534]
        automated match to d4auqc_
        complexed with zn
    35. Domains for 2y5b:
      1. 1893370Domain d2y5bb1: 2y5b B:1-73 [239020]
        Other proteins in same PDB: d2y5ba_, d2y5be_
        automated match to d3nobh_
        complexed with so4, zn
      2. 1893371Domain d2y5bb2: 2y5b B:76-152 [239021]
        Other proteins in same PDB: d2y5ba_, d2y5be_
        automated match to d3nobh_
        complexed with so4, zn
      3. 1893372Domain d2y5bf1: 2y5b F:1-75 [239022]
        Other proteins in same PDB: d2y5ba_, d2y5be_
        automated match to d3nobh_
        complexed with so4, zn
      4. 1893373Domain d2y5bf2: 2y5b F:76-152 [239023]
        Other proteins in same PDB: d2y5ba_, d2y5be_
        automated match to d3nobh_
        complexed with so4, zn
    36. Domains for 2zcb:
      1. 1893290Domain d2zcba_: 2zcb A: [154336]
        automated match to d1aara_
        complexed with zn
      2. 1893291Domain d2zcbb_: 2zcb B: [161592]
        automated match to d1aara_
        complexed with zn
      3. 1893292Domain d2zcbc_: 2zcb C: [161593]
        automated match to d1aara_
        complexed with zn
    37. Domains for 2zvn:
      1. 1893399Domain d2zvna1: 2zvn A:1-76 [244990]
        automated match to d4auqc_
      2. 1893400Domain d2zvna2: 2zvn A:77-148 [244991]
        automated match to d4auqc_
      3. 1893401Domain d2zvnc1: 2zvn C:0-76 [244992]
        automated match to d4auqc_
      4. 1893402Domain d2zvnc2: 2zvn C:77-148 [244993]
        automated match to d4auqc_
      5. 1893403Domain d2zvne1: 2zvn E:1-76 [244994]
        automated match to d4auqc_
      6. 1893404Domain d2zvne2: 2zvn E:77-146 [244995]
        automated match to d4auqc_
      7. 1893405Domain d2zvng1: 2zvn G:1-76 [244996]
        automated match to d4auqc_
      8. 1893406Domain d2zvng2: 2zvn G:77-146 [244997]
        automated match to d4auqc_
    38. Domains for 2zvo:
      1. 1893394Domain d2zvoa1: 2zvo A:0-76 [244998]
        automated match to d4auqc_
      2. 1893395Domain d2zvoa2: 2zvo A:77-148 [244999]
        automated match to d4auqc_
      3. 1893396Domain d2zvog1: 2zvo G:1-76 [245000]
        automated match to d4auqc_
      4. 1893397Domain d2zvog2: 2zvo G:77-146 [245001]
        automated match to d4auqc_
    39. Domain for 3jsv:
    40. Domain for 3k9p:
    41. Domains for 3nob:
      1. 1893357Domain d3noba_: 3nob A: [182440]
        automated match to d1aara_
        complexed with so4
      2. 1893358Domain d3nobb_: 3nob B: [182441]
        automated match to d1aara_
        complexed with so4
      3. 1893359Domain d3nobc_: 3nob C: [182442]
        automated match to d1aara_
        complexed with so4
      4. 1893360Domain d3nobd_: 3nob D: [182443]
        automated match to d1aara_
        complexed with so4
      5. 1893361Domain d3nobe_: 3nob E: [182444]
        automated match to d1aara_
        complexed with so4
      6. 1893362Domain d3nobf_: 3nob F: [182445]
        automated match to d1aara_
        complexed with so4
      7. 1893363Domain d3nobg_: 3nob G: [182446]
        automated match to d1aara_
        complexed with so4
      8. 1893364Domain d3nobh_: 3nob H: [182447]
        automated match to d1aara_
        complexed with so4
    42. Domain for 3phd:
    43. Domains for 3pse:
      1. 1893316Domain d3pseb1: 3pse B:4-78 [233268]
        automated match to d1z2ma1
        complexed with 3cn, gol
      2. 1893317Domain d3pseb2: 3pse B:79-156 [233269]
        automated match to d1z2ma2
        complexed with 3cn, gol
    44. Domains for 3r66:
      1. 1893368Domain d3r66c2: 3r66 C:79-154 [233411]
        Other proteins in same PDB: d3r66a_, d3r66b_, d3r66c1, d3r66d1
        automated match to d1z2ma2
      2. 1893369Domain d3r66d2: 3r66 D:79-154 [233412]
        Other proteins in same PDB: d3r66a_, d3r66b_, d3r66c1, d3r66d1
        automated match to d1z2ma2
    45. Domains for 3rt3:
      1. 1893307Domain d3rt3b1: 3rt3 B:3-78 [233498]
        Other proteins in same PDB: d3rt3c_
        automated match to d1z2ma1
        complexed with sin
      2. 1893308Domain d3rt3b2: 3rt3 B:79-155 [233499]
        Other proteins in same PDB: d3rt3c_
        automated match to d1z2ma2
        complexed with sin
    46. Domains for 3rzw:
      1. 1893325Domain d3rzwc_: 3rzw C: [185230]
        Other proteins in same PDB: d3rzwa_, d3rzwb_
        automated match to d1a5ra_
        complexed with gol
      2. 1893326Domain d3rzwd_: 3rzw D: [185231]
        Other proteins in same PDB: d3rzwa_, d3rzwb_
        automated match to d1a5ra_
        complexed with gol
    47. Domains for 3sdl:
      1. 1893337Domain d3sdlc2: 3sdl C:79-154 [239725]
        Other proteins in same PDB: d3sdla_, d3sdlb_, d3sdlc1, d3sdld1
        automated match to d3r66c2
      2. 1893338Domain d3sdld2: 3sdl D:79-154 [239727]
        Other proteins in same PDB: d3sdla_, d3sdlb_, d3sdlc1, d3sdld1
        automated match to d3r66c2
    48. Domain for 3uin:
    49. Domain for 3uio:
    50. Domains for 3zkj:
      1. 1893366Domain d3zkjc_: 3zkj C: [201328]
        Other proteins in same PDB: d3zkjb_, d3zkje_
        complexed with cl, edo, peg
      2. 1893367Domain d3zkjf_: 3zkj F: [201330]
        Other proteins in same PDB: d3zkjb_, d3zkje_
        complexed with cl, edo, peg
    51. Domains for 3znz:
      1. 1893300Domain d3znzb1: 3znz B:1-76 [250808]
        automated match to d4auqc_
        complexed with so4
      2. 1893301Domain d3znzb2: 3znz B:77-146 [250809]
        automated match to d4auqc_
        complexed with so4
    52. Domain for 3zo5:
    53. Domains for 4ap4:
      1. 1893330Domain d4ap4c_: 4ap4 C: [194912]
        Other proteins in same PDB: d4ap4b_, d4ap4e_
        automated match to d3nobh_
        complexed with zn
      2. 1893331Domain d4ap4f_: 4ap4 F: [194913]
        Other proteins in same PDB: d4ap4b_, d4ap4e_
        automated match to d3nobh_
        complexed with zn
    54. Domains for 4auq:
      1. 1893332Domain d4auqc_: 4auq C: [194816]
        Other proteins in same PDB: d4auqa_, d4auqd_
        automated match to d3nheb_
        complexed with zn
      2. 1893333Domain d4auqf_: 4auq F: [194818]
        Other proteins in same PDB: d4auqa_, d4auqd_
        automated match to d3nheb_
        complexed with zn
    55. Domain for 4b95:
    56. Domain for 4bkg:
    57. Domains for 4boz:
      1. 1893385Domain d4bozb_: 4boz B: [251292]
        automated match to d4auqc_
        complexed with gol
      2. 1893386Domain d4bozc_: 4boz C: [251293]
        automated match to d4auqc_
        complexed with gol
      3. 1893387Domain d4boze_: 4boz E: [251294]
        automated match to d4auqc_
        complexed with gol
    58. Domains for 4dwf:
      1. 1893297Domain d4dwfa_: 4dwf A: [195743]
        automated match to d1wx9a1
        complexed with so4
      2. 1893298Domain d4dwfb_: 4dwf B: [201746]
        automated match to d4dwfa_
        complexed with so4
    59. Domains for 4eew:
      1. 1893272Domain d4eewa_: 4eew A: [201835]
        automated match to d4eewb_
      2. 1893273Domain d4eewb_: 4eew B: [195625]
        automated match to d1wx9a1
    60. Domain for 4hjk:
    61. Domains for 4hk2:
      1. 1893276Domain d4hk2a_: 4hk2 A: [202442]
        automated match to d4hk2c_
        complexed with so4
      2. 1893277Domain d4hk2b_: 4hk2 B: [202443]
        automated match to d4hk2c_
        complexed with so4
      3. 1893278Domain d4hk2c_: 4hk2 C: [193362]
        automated match to d3nobh_
        complexed with so4
      4. 1893279Domain d4hk2d_: 4hk2 D: [202444]
        automated match to d4hk2c_
        complexed with so4
    62. Domains for 4icu:
      1. 1893374Domain d4icua_: 4icu A: [256776]
        automated match to d1wjna_
      2. 1893375Domain d4icub_: 4icu B: [262716]
        automated match to d1wjna_
      3. 1893376Domain d4icuc_: 4icu C: [262717]
        automated match to d1wjna_
      4. 1893377Domain d4icud_: 4icu D: [262718]
        automated match to d1wjna_
    63. Domain for 4icv:
    64. Domains for 4msm:
      1. 1893305Domain d4msmb_: 4msm B: [266767]
        automated match to d3dbhi_
        complexed with edo, po4, zn; mutant
      2. 1893306Domain d4msmd_: 4msm D: [266768]
        automated match to d3dbhi_
        complexed with edo, po4, zn; mutant
    65. Domains for 4msq:
      1. 1893327Domain d4msqb_: 4msq B: [266771]
        automated match to d3dbhi_
        complexed with edo, po4, zn
      2. 1893328Domain d4msqd_: 4msq D: [266772]
        automated match to d3dbhi_
        complexed with edo, po4, zn
    66. Domains for 4pig:
      1. 1893310Domain d4piga_: 4pig A: [263493]
        automated match to d4pigd_
        complexed with ca, cl, na; mutant
      2. 1893311Domain d4pigb_: 4pig B: [263494]
        automated match to d4pigd_
        complexed with ca, cl, na; mutant
      3. 1893312Domain d4pigc_: 4pig C: [263495]
        automated match to d4pigd_
        complexed with ca, cl, na; mutant
      4. 1893313Domain d4pigd_: 4pig D: [260735]
        automated match to d4auqc_
        complexed with ca, cl, na; mutant
    67. Domains for 4pih:
      1. 1893288Domain d4piha_: 4pih A: [260737]
        automated match to d4auqc_
        complexed with ca, cl; mutant
      2. 1893289Domain d4pihb_: 4pih B: [263496]
        automated match to d4piha_
        complexed with ca, cl; mutant
    68. Domains for 4pij:
      1. 1893293Domain d4pija_: 4pij A: [260736]
        automated match to d3rula_
        complexed with gol, so4; mutant
      2. 1893294Domain d4pijb_: 4pij B: [263497]
        automated match to d4pija_
        complexed with gol, so4; mutant
    69. Domain for 4pqt:
    70. Domain for 4r62:
    71. Domains for 4s1z:
      1. 1893408Domain d4s1za_: 4s1z A: [271239]
        automated match to d2murb_
        complexed with zn
      2. 1893409Domain d4s1zb_: 4s1z B: [271237]
        automated match to d2murb_
        complexed with zn
      3. 1893410Domain d4s1zc_: 4s1z C: [271238]
        automated match to d2murb_
        complexed with zn
      4. 1893411Domain d4s1zd_: 4s1z D: [271236]
        automated match to d2murb_
        complexed with zn
      5. 1893412Domain d4s1ze_: 4s1z E: [271235]
        automated match to d2murb_
        complexed with zn
    72. Domains for 4v3k:
      1. 1893352Domain d4v3kb_: 4v3k B: [271276]
        Other proteins in same PDB: d4v3ka_, d4v3kd_
        automated match to d3dbhi_
        complexed with cl, edo, zn
      2. 1893353Domain d4v3ke_: 4v3k E: [271279]
        Other proteins in same PDB: d4v3ka_, d4v3kd_
        automated match to d3dbhi_
        complexed with cl, edo, zn
    73. Domains for 4v3l:
      1. 1893303Domain d4v3lb_: 4v3l B: [271283]
        Other proteins in same PDB: d4v3la_
        automated match to d3dbhi_
        complexed with edo, zn
      2. 1893304Domain d4v3ld_: 4v3l D: [271284]
        Other proteins in same PDB: d4v3la_
        automated match to d3dbhi_
        complexed with edo, zn
    74. Domain for 4wjn:
    75. Domain for 4wjo:
    76. Domain for 4zfr:
    77. Domains for 4zft:
      1. 1893382Domain d4zftb_: 4zft B: [278248]
        automated match to d3dbhi_
        complexed with edo, zn; mutant
      2. 1893383Domain d4zftd_: 4zft D: [278251]
        automated match to d3dbhi_
        complexed with edo, zn; mutant
    78. Domains for 5af4:
      1. 1893339Domain d5af4a_: 5af4 A: [270195]
        automated match to d2murb_
        complexed with gol, so4
      2. 1893340Domain d5af4b_: 5af4 B: [270190]
        automated match to d2murb_
        complexed with gol, so4
      3. 1893341Domain d5af4c_: 5af4 C: [270193]
        automated match to d2murb_
        complexed with gol, so4
      4. 1893342Domain d5af4d_: 5af4 D: [270198]
        automated match to d2murb_
        complexed with gol, so4
      5. 1893343Domain d5af4e_: 5af4 E: [270197]
        automated match to d2murb_
        complexed with gol, so4
      6. 1893344Domain d5af4f_: 5af4 F: [270192]
        automated match to d2murb_
        complexed with gol, so4
      7. 1893345Domain d5af4g_: 5af4 G: [270191]
        automated match to d2murb_
        complexed with gol, so4
      8. 1893346Domain d5af4h_: 5af4 H: [270194]
        automated match to d2murb_
        complexed with gol, so4
    79. Domain for 5af5:
  7. 1893432Mouse (Mus musculus) [TaxId:10090] [187278] (3 PDB entries)
    1. Domains for 2znv:
      1. 1893433Domain d2znvb_: 2znv B: [154707]
        Other proteins in same PDB: d2znva_, d2znvc_, d2znvd_, d2znvf_
        automated match to d1aara_
        complexed with edo, zn
      2. 1893434Domain d2znve_: 2znv E: [154709]
        Other proteins in same PDB: d2znva_, d2znvc_, d2znvd_, d2znvf_
        automated match to d1aara_
        complexed with edo, zn
    2. Domain for 3b1l:
    3. Domain for 4jgh:
  8. 1893437Paramecium tetraurelia strain d4-2 [TaxId:412030] [161334] (1 PDB entry)
  9. 1893439Schizosaccharomyces pombe [TaxId:284812] [196615] (2 PDB entries)
    1. Domain for 4ii2:
    2. Domains for 4ii3:
      1. 1893441Domain d4ii3b_: 4ii3 B: [223182]
        automated match to d3dbhi_
        complexed with atp, ca, mg
      2. 1893442Domain d4ii3d_: 4ii3 D: [223183]
        automated match to d3dbhi_
        complexed with atp, ca, mg

More info for Protein automated matches from d.15.1.1: Ubiquitin-related

Timeline for Protein automated matches from d.15.1.1: Ubiquitin-related: