Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2501110Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2501111Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2502275Family d.15.1.3: GABARAP-like [54253] (4 proteins)
    intracellular membrane trafficking and fusion proteins
    automatically mapped to Pfam PF02991
  6. 2502297Protein automated matches [190358] (6 species)
    not a true protein

Species:

  1. 2502298Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188724] (3 PDB entries)
    1. Domain for 2kq7:
    2. Domain for 2kwc:
    3. Domains for 2zpn:
      1. 2502299Domain d2zpna_: 2zpn A: [171401]
        automated match to d1eo6a_
        complexed with so4
      2. 2502300Domain d2zpnb_: 2zpn B: [171402]
        automated match to d1eo6a_
        complexed with so4
      3. 2502301Domain d2zpnc_: 2zpn C: [171403]
        automated match to d1eo6a_
        complexed with so4
      4. 2502302Domain d2zpnd_: 2zpn D: [171404]
        automated match to d1eo6a_
        complexed with so4
  2. 2502305Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [189812] (4 PDB entries)
    1. Domain for 2li5:
    2. Domain for 3rui:
    3. Domain for 3vh3:
    4. Domain for 3vh4:
  3. 2502310Human (Homo sapiens) [TaxId:9606] [187279] (27 PDB entries)
    1. Domain for 2l8j:
    2. Domains for 2r2q:
      1. 2502316Domain d2r2qa1: 2r2q A:3-111 [167943]
        Other proteins in same PDB: d2r2qa2, d2r2qb2
        automated match to d1gnua_
        complexed with mpd, unx
      2. 2502317Domain d2r2qb1: 2r2q B:3-111 [167944]
        Other proteins in same PDB: d2r2qa2, d2r2qb2
        automated match to d1gnua_
        complexed with mpd, unx
    3. Domains for 2zjd:
      1. 2502311Domain d2zjda_: 2zjd A: [154484]
        automated match to d1v49a_
      2. 2502312Domain d2zjdc_: 2zjd C: [154485]
        automated match to d1v49a_
    4. Domains for 3eci:
      1. 2502354Domain d3ecia_: 3eci A: [174827]
        automated match to d1v49a_
      2. 2502355Domain d3ecib_: 3eci B: [174828]
        automated match to d1v49a_
    5. Domain for 3vtu:
    6. Domain for 3vtv:
    7. Domains for 3vtw:
      1. 2502361Domain d3vtwa_: 3vtw A: [250680]
        automated match to d2zjdc_
        complexed with so4
      2. 2502362Domain d3vtwb_: 3vtw B: [250681]
        automated match to d2zjdc_
        complexed with so4
      3. 2502363Domain d3vtwc_: 3vtw C: [250682]
        automated match to d2zjdc_
        complexed with so4
    8. Domain for 3wal:
    9. Domains for 3wan:
      1. 2502324Domain d3wana_: 3wan A: [230201]
        automated match to d3vtva_
        complexed with mpd
      2. 2502325Domain d3wanb_: 3wan B: [233939]
        automated match to d3wana_
        complexed with mpd
    10. Domains for 3wao:
      1. 2502366Domain d3waoa_: 3wao A: [230199]
        automated match to d3vtva_
      2. 2502367Domain d3waob_: 3wao B: [230196]
        automated match to d3vtva_
      3. 2502368Domain d3waoc_: 3wao C: [230197]
        automated match to d3vtva_
      4. 2502369Domain d3waod_: 3wao D: [233940]
        automated match to d3waoa_
    11. Domain for 3wap:
    12. Domains for 3x0w:
      1. 2502364Domain d3x0wa1: 3x0w A:29-145 [268087]
        Other proteins in same PDB: d3x0wa2, d3x0wb2
        automated match to d3waoa_
      2. 2502365Domain d3x0wb1: 3x0w B:29-145 [268088]
        Other proteins in same PDB: d3x0wa2, d3x0wb2
        automated match to d3waoa_
    13. Domains for 4co7:
      1. 2502332Domain d4co7a1: 4co7 A:1-117 [268235]
        Other proteins in same PDB: d4co7a2, d4co7b2
        automated match to d3dowa_
      2. 2502333Domain d4co7b1: 4co7 B:1-117 [268236]
        Other proteins in same PDB: d4co7a2, d4co7b2
        automated match to d3dowa_
    14. Domains for 4waa:
      1. 2502352Domain d4waaa1: 4waa A:18-134 [276754]
        Other proteins in same PDB: d4waaa2, d4waab2
        automated match to d3waoa_
      2. 2502353Domain d4waab1: 4waa B:18-134 [276759]
        Other proteins in same PDB: d4waaa2, d4waab2
        automated match to d3waoa_
    15. Domain for 4zdv:
    16. Domains for 5cx3:
      1. 2502348Domain d5cx3a_: 5cx3 A: [320265]
        automated match to d3wanb_
        complexed with gol
      2. 2502349Domain d5cx3b_: 5cx3 B: [320305]
        automated match to d3wanb_
        complexed with gol
      3. 2502350Domain d5cx3c_: 5cx3 C: [320324]
        automated match to d3wanb_
        complexed with gol
      4. 2502351Domain d5cx3d_: 5cx3 D: [320266]
        automated match to d3wanb_
        complexed with gol
    17. Domain for 5dcn:
    18. Domains for 5dpr:
      1. 2502356Domain d5dpra_: 5dpr A: [323263]
        automated match to d3wanb_
      2. 2502357Domain d5dprb_: 5dpr B: [323213]
        automated match to d3wanb_
      3. 2502358Domain d5dprc_: 5dpr C: [323266]
        automated match to d3wanb_
      4. 2502359Domain d5dprd_: 5dpr D: [323214]
        automated match to d3wanb_
    19. Domains for 5dpw:
      1. 2502340Domain d5dpwa_: 5dpw A: [323229]
        automated match to d3wapa_
      2. 2502341Domain d5dpwc_: 5dpw C: [323217]
        automated match to d3wapa_
      3. 2502342Domain d5dpwe_: 5dpw E: [323216]
        automated match to d3wapa_
      4. 2502343Domain d5dpwg_: 5dpw G: [323248]
        automated match to d3wapa_
      5. 2502344Domain d5dpwi_: 5dpw I: [323234]
        automated match to d3wapa_
      6. 2502345Domain d5dpwk_: 5dpw K: [323210]
        automated match to d3wapa_
      7. 2502346Domain d5dpwm_: 5dpw M: [323247]
        automated match to d3wapa_
      8. 2502347Domain d5dpwo_: 5dpw O: [323355]
        automated match to d3wapa_
    20. Domain for 5ms2:
    21. Domains for 5ms5:
      1. 2502314Domain d5ms5a1: 5ms5 A:4-117 [333214]
        Other proteins in same PDB: d5ms5a2
        automated match to d3waoa_
        complexed with gol, so4
      2. 2502315Domain d5ms5b1: 5ms5 B:4-118 [333218]
        Other proteins in same PDB: d5ms5a2
        automated match to d3waoa_
        complexed with gol, so4
    22. Domains for 5ms6:
      1. 2502327Domain d5ms6a1: 5ms6 A:4-117 [333344]
        Other proteins in same PDB: d5ms6a2, d5ms6b2
        automated match to d3waoa_
      2. 2502328Domain d5ms6b1: 5ms6 B:3-117 [333241]
        Other proteins in same PDB: d5ms6a2, d5ms6b2
        automated match to d3waoa_
    23. Domains for 5v4k:
      1. 2502338Domain d5v4ka_: 5v4k A: [334315]
        automated match to d3waoa_
        complexed with gol, so4
      2. 2502339Domain d5v4kb_: 5v4k B: [334327]
        automated match to d3waoa_
        complexed with gol, so4
    24. Domains for 5w9a:
      1. 3058602Domain d5w9ac_: 5w9a C: [358664]
        automated match to d5ms5b1
        complexed with zn
      2. 3058722Domain d5w9ad_: 5w9a D: [358784]
        automated match to d5ms5b1
        complexed with zn
    25. Domains for 5xac:
      1. 2502318Domain d5xaca1: 5xac A:2-118 [336738]
        Other proteins in same PDB: d5xaca2, d5xacb2, d5xacc2, d5xacd2
        automated match to d3wanb_
      2. 2502319Domain d5xacb1: 5xac B:2-118 [336771]
        Other proteins in same PDB: d5xaca2, d5xacb2, d5xacc2, d5xacd2
        automated match to d3wanb_
      3. 2502320Domain d5xacc1: 5xac C:2-116 [336748]
        Other proteins in same PDB: d5xaca2, d5xacb2, d5xacc2, d5xacd2
        automated match to d3wanb_
      4. 2502321Domain d5xacd1: 5xac D:2-119 [336765]
        Other proteins in same PDB: d5xaca2, d5xacb2, d5xacc2, d5xacd2
        automated match to d3wanb_
    26. Domains for 5xad:
      1. 2502329Domain d5xada_: 5xad A: [336711]
        automated match to d2zjdc_
      2. 2502330Domain d5xadb_: 5xad B: [336780]
        automated match to d2zjdc_
    27. Domains for 5xae:
      1. 2502334Domain d5xaea1: 5xae A:0-117 [336706]
        Other proteins in same PDB: d5xaea2, d5xaeb2, d5xaec2, d5xaed2
        automated match to d3wanb_
      2. 2502335Domain d5xaeb1: 5xae B:0-117 [336716]
        Other proteins in same PDB: d5xaea2, d5xaeb2, d5xaec2, d5xaed2
        automated match to d3wanb_
      3. 2502336Domain d5xaec1: 5xae C:0-117 [336786]
        Other proteins in same PDB: d5xaea2, d5xaeb2, d5xaec2, d5xaed2
        automated match to d3wanb_
      4. 2502337Domain d5xaed1: 5xae D:0-117 [336773]
        Other proteins in same PDB: d5xaea2, d5xaeb2, d5xaec2, d5xaed2
        automated match to d3wanb_
  4. 2502372Norway rat (Rattus norvegicus) [TaxId:10116] [187189] (3 PDB entries)
    1. Domain for 2z0d:
    2. Domain for 2z0e:
    3. Domain for 2zzp:
  5. 2502376Silkworm (Bombyx mori) [TaxId:7091] [189398] (1 PDB entry)
  6. 3052518Mus musculus [TaxId:10090] [352580] (3 PDB entries)
    1. Domain for 5yip:
    2. Domain for 5yiq:
    3. Domains for 5yis:
      1. 3052563Domain d5yisb_: 5yis B: [352625]
        automated match to d2zjdc_
        complexed with gol, po4
      2. 3052581Domain d5yisa_: 5yis A: [352643]
        automated match to d2zjdc_
        complexed with gol, po4

More info for Protein automated matches from d.15.1.3: GABARAP-like

Timeline for Protein automated matches from d.15.1.3: GABARAP-like: