SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.15: beta-Grasp (ubiquitin-like) [54235] (15 superfamilies)
core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
Superfamily d.15.1: Ubiquitin-like [54236] (11 families)
Family d.15.1.3: GABARAP-like [54253] (4 proteins)
intracellular membrane trafficking and fusion proteins
automatically mapped to Pfam PF02991
Protein automated matches [190358] (6 species)
not a true protein

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188724] (3 PDB entries)
1. Domain for 2kq7:
  - Domain d2kq7a1: 2kq7 A:3-119 [242614]
    Other proteins in same PDB: d2kq7a2
    automated match to d3d32a_
2. Domain for 2kwc:
  - Domain d2kwca_: 2kwc A: [242680]
    automated match to d1eo6a_
3. Domains for 2zpn:
  1. Domain d2zpna_: 2zpn A: [171401]
    automated match to d1eo6a_
    complexed with so4
  2. Domain d2zpnb_: 2zpn B: [171402]
    automated match to d1eo6a_
    complexed with so4
  3. Domain d2zpnc_: 2zpn C: [171403]
    automated match to d1eo6a_
    complexed with so4
  4. Domain d2zpnd_: 2zpn D: [171404]
    automated match to d1eo6a_
    complexed with so4
Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [189812] (4 PDB entries)
1. Domain for 2li5:
  - Domain d2li5a1: 2li5 A:1-116 [242890]
    Other proteins in same PDB: d2li5a2
    automated match to d1eo6a_
2. Domain for 3rui:
  - Domain d3ruib_: 3rui B: [185189]
    automated match to d1kota_
    complexed with zn
3. Domain for 3vh3:
  - Domain d3vh3b_: 3vh3 B: [186495]
    automated match to d1eo6a_
    complexed with zn
4. Domain for 3vh4:
  - Domain d3vh4b_: 3vh4 B: [186496]
    automated match to d1eo6a_
    complexed with atp, mg, zn
Human (Homo sapiens) [TaxId:9606] [187279] (33 PDB entries)
1. Domain for 2l8j:
  - Domain d2l8ja1: 2l8j A:2-115 [242808]
    Other proteins in same PDB: d2l8ja2
    automated match to d3wana_
2. Domains for 2r2q:
  1. Domain d2r2qa1: 2r2q A:3-111 [167943]
    Other proteins in same PDB: d2r2qa2, d2r2qb2
    automated match to d1gnua_
    complexed with mpd, unx
  2. Domain d2r2qb1: 2r2q B:3-111 [167944]
    Other proteins in same PDB: d2r2qa2, d2r2qb2
    automated match to d1gnua_
    complexed with mpd, unx
3. Domains for 2zjd:
  1. Domain d2zjda_: 2zjd A: [154484]
    automated match to d1v49a_
  2. Domain d2zjdc_: 2zjd C: [154485]
    automated match to d1v49a_
4. Domains for 3eci:
  1. Domain d3ecia_: 3eci A: [174827]
    automated match to d1v49a_
  2. Domain d3ecib_: 3eci B: [174828]
    automated match to d1v49a_
5. Domain for 3vtu:
  - Domain d3vtua1: 3vtu A:6-123 [218102]
    Other proteins in same PDB: d3vtua2
    automated match to d2zjdc_
    complexed with so4
6. Domain for 3vtv:
  - Domain d3vtva_: 3vtv A: [218103]
    automated match to d2zjdc_
    complexed with so4
7. Domains for 3vtw:
  1. Domain d3vtwa_: 3vtw A: [250680]
    automated match to d2zjdc_
    complexed with so4
  2. Domain d3vtwb_: 3vtw B: [250681]
    automated match to d2zjdc_
    complexed with so4
  3. Domain d3vtwc_: 3vtw C: [250682]
    automated match to d2zjdc_
    complexed with so4
8. Domain for 3wal:
  - Domain d3wala_: 3wal A: [230198]
    automated match to d3vtua_
    complexed with mlt
9. Domains for 3wan:
  1. Domain d3wana_: 3wan A: [230201]
    automated match to d3vtva_
    complexed with mpd
  2. Domain d3wanb_: 3wan B: [233939]
    automated match to d3wana_
    complexed with mpd
10. Domains for 3wao:
  1. Domain d3waoa_: 3wao A: [230199]
    automated match to d3vtva_
  2. Domain d3waob_: 3wao B: [230196]
    automated match to d3vtva_
  3. Domain d3waoc_: 3wao C: [230197]
    automated match to d3vtva_
  4. Domain d3waod_: 3wao D: [233940]
    automated match to d3waoa_
11. Domain for 3wap:
  - Domain d3wapa_: 3wap A: [250739]
    automated match to d3wana_
12. Domains for 3x0w:
  1. Domain d3x0wa1: 3x0w A:29-145 [268087]
    Other proteins in same PDB: d3x0wa2, d3x0wb2
    automated match to d3waoa_
  2. Domain d3x0wb1: 3x0w B:29-145 [268088]
    Other proteins in same PDB: d3x0wa2, d3x0wb2
    automated match to d3waoa_
13. Domains for 4co7:
  1. Domain d4co7a1: 4co7 A:1-117 [268235]
    Other proteins in same PDB: d4co7a2, d4co7b2
    automated match to d3dowa_
  2. Domain d4co7b1: 4co7 B:1-117 [268236]
    Other proteins in same PDB: d4co7a2, d4co7b2
    automated match to d3dowa_
14. Domains for 4waa:
  1. Domain d4waaa1: 4waa A:18-134 [276754]
    Other proteins in same PDB: d4waaa2, d4waab2
    automated match to d3waoa_
  2. Domain d4waab1: 4waa B:18-134 [276759]
    Other proteins in same PDB: d4waaa2, d4waab2
    automated match to d3waoa_
15. Domain for 4zdv:
  - Domain d4zdva1: 4zdv A:2-119 [273584]
    Other proteins in same PDB: d4zdva2
    automated match to d3wanb_
16. Domains for 5cx3:
  1. Domain d5cx3a_: 5cx3 A: [320265]
    automated match to d3wanb_
    complexed with gol
  2. Domain d5cx3b_: 5cx3 B: [320305]
    automated match to d3wanb_
    complexed with gol
  3. Domain d5cx3c_: 5cx3 C: [320324]
    automated match to d3wanb_
    complexed with gol
  4. Domain d5cx3d_: 5cx3 D: [320266]
    automated match to d3wanb_
    complexed with gol
17. Domain for 5dcn:
  - Domain d5dcna1: 5dcn A:2-119 [313982]
    Other proteins in same PDB: d5dcna2
    automated match to d3waoa_
    complexed with so4
18. Domains for 5dpr:
  1. Domain d5dpra_: 5dpr A: [323263]
    automated match to d3wanb_
  2. Domain d5dprb_: 5dpr B: [323213]
    automated match to d3wanb_
  3. Domain d5dprc_: 5dpr C: [323266]
    automated match to d3wanb_
  4. Domain d5dprd_: 5dpr D: [323214]
    automated match to d3wanb_
19. Domains for 5dpw:
  1. Domain d5dpwa_: 5dpw A: [323229]
    automated match to d3wapa_
  2. Domain d5dpwc_: 5dpw C: [323217]
    automated match to d3wapa_
  3. Domain d5dpwe_: 5dpw E: [323216]
    automated match to d3wapa_
  4. Domain d5dpwg_: 5dpw G: [323248]
    automated match to d3wapa_
  5. Domain d5dpwi_: 5dpw I: [323234]
    automated match to d3wapa_
  6. Domain d5dpwk_: 5dpw K: [323210]
    automated match to d3wapa_
  7. Domain d5dpwm_: 5dpw M: [323247]
    automated match to d3wapa_
  8. Domain d5dpwo_: 5dpw O: [323355]
    automated match to d3wapa_
20. Domain for 5ms2:
  - Domain d5ms2b_: 5ms2 B: [333219]
    automated match to d3waoa_
21. Domains for 5ms5:
  1. Domain d5ms5a1: 5ms5 A:4-117 [333214]
    Other proteins in same PDB: d5ms5a2
    automated match to d3waoa_
    complexed with gol, so4
  2. Domain d5ms5b1: 5ms5 B:4-118 [333218]
    Other proteins in same PDB: d5ms5a2
    automated match to d3waoa_
    complexed with gol, so4
22. Domains for 5ms6:
  1. Domain d5ms6a1: 5ms6 A:4-117 [333344]
    Other proteins in same PDB: d5ms6a2, d5ms6b2
    automated match to d3waoa_
  2. Domain d5ms6b1: 5ms6 B:3-117 [333241]
    Other proteins in same PDB: d5ms6a2, d5ms6b2
    automated match to d3waoa_
23. Domains for 5v4k:
  1. Domain d5v4ka_: 5v4k A: [334315]
    automated match to d3waoa_
    complexed with gol, so4
  2. Domain d5v4kb_: 5v4k B: [334327]
    automated match to d3waoa_
    complexed with gol, so4
24. Domains for 5w9a:
  1. Domain d5w9ac_: 5w9a C: [358664]
    automated match to d5ms5b1
    complexed with zn
  2. Domain d5w9ad_: 5w9a D: [358784]
    automated match to d5ms5b1
    complexed with zn
25. Domains for 5xac:
  1. Domain d5xaca1: 5xac A:2-118 [336738]
    Other proteins in same PDB: d5xaca2, d5xacb2, d5xacc2, d5xacd2
    automated match to d3wanb_
  2. Domain d5xacb1: 5xac B:2-118 [336771]
    Other proteins in same PDB: d5xaca2, d5xacb2, d5xacc2, d5xacd2
    automated match to d3wanb_
  3. Domain d5xacc1: 5xac C:2-116 [336748]
    Other proteins in same PDB: d5xaca2, d5xacb2, d5xacc2, d5xacd2
    automated match to d3wanb_
  4. Domain d5xacd1: 5xac D:2-119 [336765]
    Other proteins in same PDB: d5xaca2, d5xacb2, d5xacc2, d5xacd2
    automated match to d3wanb_
26. Domains for 5xad:
  1. Domain d5xada_: 5xad A: [336711]
    automated match to d2zjdc_
  2. Domain d5xadb_: 5xad B: [336780]
    automated match to d2zjdc_
27. Domains for 5xae:
  1. Domain d5xaea1: 5xae A:0-117 [336706]
    Other proteins in same PDB: d5xaea2, d5xaeb2, d5xaec2, d5xaed2
    automated match to d3wanb_
  2. Domain d5xaeb1: 5xae B:0-117 [336716]
    Other proteins in same PDB: d5xaea2, d5xaeb2, d5xaec2, d5xaed2
    automated match to d3wanb_
  3. Domain d5xaec1: 5xae C:0-117 [336786]
    Other proteins in same PDB: d5xaea2, d5xaeb2, d5xaec2, d5xaed2
    automated match to d3wanb_
  4. Domain d5xaed1: 5xae D:0-117 [336773]
    Other proteins in same PDB: d5xaea2, d5xaeb2, d5xaec2, d5xaed2
    automated match to d3wanb_
28. Domain for 6h8c:
  - Domain d6h8ca1: 6h8c A:3-116 [368390]
    Other proteins in same PDB: d6h8ca2
    automated match to d1eo6b_
29. Domains for 6j04:
  1. Domain d6j04a_: 6j04 A: [377076]
    automated match to d3vtva_
    complexed with so4; mutant
  2. Domain d6j04b_: 6j04 B: [377050]
    automated match to d3vtva_
    complexed with so4; mutant
  3. Domain d6j04c_: 6j04 C: [377070]
    automated match to d3vtva_
    complexed with so4; mutant
  4. Domain d6j04d_: 6j04 D: [377061]
    automated match to d3vtva_
    complexed with so4; mutant
30. Domain for 6lan:
  - Domain d6lana_: 6lan A: [390853]
    automated match to d5dprb_
31. Domain for 6tbe:
  - Domain d6tbea1: 6tbe A:8-122 [395670]
    Other proteins in same PDB: d6tbea2
    automated match to d3vtva_
    complexed with edo, nov
32. Domain for 7elg:
  - Domain d7elga1: 7elg A:6-123 [421698]
    Other proteins in same PDB: d7elga2
    automated match to d6lana_
    complexed with 8z6, so4
33. Domains for 7lk3:
  1. Domain d7lk3a1: 7lk3 A:1-117 [403454]
    Other proteins in same PDB: d7lk3a2, d7lk3b2
    automated match to d1v49a_
    complexed with edo
  2. Domain d7lk3b1: 7lk3 B:1-117 [403458]
    Other proteins in same PDB: d7lk3a2, d7lk3b2
    automated match to d1v49a_
    complexed with edo
Mouse (Mus musculus) [TaxId:10090] [352580] (2 PDB entries)
1. Domain for 5yip:
  - Domain d5yipa1: 5yip A:1-117 [352581]
    Other proteins in same PDB: d5yipa2
    automated match to d1gnua_
    complexed with gol
2. Domains for 7cdb:
  1. Domain d7cdba1: 7cdb A:1-117 [394450]
    Other proteins in same PDB: d7cdba2, d7cdbb2
    automated match to d1gnua_
    complexed with act, cit
  2. Domain d7cdbb1: 7cdb B:1-117 [394422]
    Other proteins in same PDB: d7cdba2, d7cdbb2
    automated match to d1gnua_
    complexed with act, cit
Norway rat (Rattus norvegicus) [TaxId:10116] [187189] (3 PDB entries)
1. Domain for 2z0d:
  - Domain d2z0db_: 2z0d B: [140096]
    Other proteins in same PDB: d2z0da1
    automated match to d1v49a_
2. Domain for 2z0e:
  - Domain d2z0eb_: 2z0e B: [140097]
    Other proteins in same PDB: d2z0ea_
    automated match to d1v49a_
3. Domain for 2zzp:
  - Domain d2zzpb_: 2zzp B: [171616]
    Other proteins in same PDB: d2zzpa_
    automated match to d1v49a_
Silkworm (Bombyx mori) [TaxId:7091] [189398] (1 PDB entry)
- Domains for 3m95:
  1. Domain d3m95a_: 3m95 A: [180966]
    Other proteins in same PDB: d3m95b2
    automated match to d1kota_
  2. Domain d3m95b1: 3m95 B:1-115 [180967]
    Other proteins in same PDB: d3m95b2
    automated match to d1kota_

More info for Protein automated matches from d.15.1.3: GABARAP-like

Timeline for Protein automated matches from d.15.1.3: GABARAP-like:

Protein automated matches from d.15.1.3: GABARAP-like first appeared in SCOPe 2.01
Protein automated matches from d.15.1.3: GABARAP-like appears in SCOPe 2.07