PDB entry 5ms6

View 5ms6 on RCSB PDB site
Description: High-salt structure of RavZ LIR2-fused human LC3B
Class: protein binding
Keywords: Autophagy / Host-pathogen interaction / Protein binding /RavZ / LIR / LC3, Protein binding
Deposited on 2016-12-31, released 2017-04-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-04-26, with a file datestamp of 2017-04-21.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Microtubule-associated proteins 1A/1B light chain 3B
    Species: Homo sapiens [TaxId:9606]
    Gene: MAP1LC3B, MAP1ALC3
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9GZQ8
      • expression tag (2-15)
    Domains in SCOPe 2.08: d5ms6a1, d5ms6a2
  • Chain 'B':
    Compound: Microtubule-associated proteins 1A/1B light chain 3B
    Species: Homo sapiens [TaxId:9606]
    Gene: MAP1LC3B, MAP1ALC3
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9GZQ8
      • expression tag (6-14)
    Domains in SCOPe 2.08: d5ms6b1, d5ms6b2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ms6A (A:)
ghmgsdidefdllegdegspsektfkqrrtfeqrvedvrlireqhptkipviierykgek
qlpvldktkflvpdhvnmselikiirrrlqlnanqaffllvnghsmvsvstpisevyese
kdedgflymvyasqetf

    Sequence, based on observed residues (ATOM records): (download) 
    >5ms6A (A:)
mgsdidefdllegdektfkqrrtfeqrvedvrlireqhptkipviierykgekqlpvldk
tkflvpdhvnmselikiirrrlqlnanqaffllvnghsmvsvstpisevyesekdedgfl
ymvyasqe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ms6B (B:)
ghmgsdidefdllegdegspsektfkqrrtfeqrvedvrlireqhptkipviierykgek
qlpvldktkflvpdhvnmselikiirrrlqlnanqaffllvnghsmvsvstpisevyese
kdedgflymvyasqetf

    Sequence, based on observed residues (ATOM records): (download) 
    >5ms6B (B:)
idefdllegsektfkqrrtfeqrvedvrlireqhptkipviierykgekqlpvldktkfl
vpdhvnmselikiirrrlqlnanqaffllvnghsmvsvstpisevyesekdedgflymvy
asqe