SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Human (Homo sapiens) [TaxId: 9606]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2158219Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2158220Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2159172Family d.15.1.3: GABARAP-like [54253] (4 protein domains)
    intracellular membrane trafficking and fusion proteins
    automatically mapped to Pfam PF02991
  6. 2159194Protein automated matches [190358] (5 species)
    not a true protein
  7. 2159207Species Human (Homo sapiens) [TaxId:9606] [187279] (23 PDB entries)

PDB entries in Species: Human (Homo sapiens) [TaxId: 9606]:

  1. Domain(s) for 2l8j:
  2. Domain(s) for 2r2q:
    1. 2159210Domain d2r2qa1: 2r2q A:3-111 [167943]
      Other proteins in same PDB: d2r2qa2, d2r2qb2
      automated match to d1gnua_
      complexed with mpd, unx
    2. 2159211Domain d2r2qb1: 2r2q B:3-111 [167944]
      Other proteins in same PDB: d2r2qa2, d2r2qb2
      automated match to d1gnua_
      complexed with mpd, unx
  3. Domain(s) for 2zjd:
    1. 2159208Domain d2zjda_: 2zjd A: [154484]
      automated match to d1v49a_
    2. 2159209Domain d2zjdc_: 2zjd C: [154485]
      automated match to d1v49a_
  4. Domain(s) for 3eci:
    1. 2159222Domain d3ecia_: 3eci A: [174827]
      automated match to d1v49a_
    2. 2159223Domain d3ecib_: 3eci B: [174828]
      automated match to d1v49a_
  5. Domain(s) for 3vtu:
  6. Domain(s) for 3vtv:
  7. Domain(s) for 3vtw:
    1. 2159224Domain d3vtwa_: 3vtw A: [250680]
      automated match to d2zjdc_
      complexed with so4
    2. 2159225Domain d3vtwb_: 3vtw B: [250681]
      automated match to d2zjdc_
      complexed with so4
    3. 2159226Domain d3vtwc_: 3vtw C: [250682]
      automated match to d2zjdc_
      complexed with so4
  8. Domain(s) for 3wal:
  9. Domain(s) for 3wan:
    1. 2159214Domain d3wana_: 3wan A: [230201]
      automated match to d3vtva_
      complexed with mpd
    2. 2159215Domain d3wanb_: 3wan B: [233939]
      automated match to d3wana_
      complexed with mpd
  10. Domain(s) for 3wao:
    1. 2159227Domain d3waoa_: 3wao A: [230199]
      automated match to d3vtva_
    2. 2159228Domain d3waob_: 3wao B: [230196]
      automated match to d3vtva_
    3. 2159229Domain d3waoc_: 3wao C: [230197]
      automated match to d3vtva_
    4. 2159230Domain d3waod_: 3wao D: [233940]
      automated match to d3waoa_
  11. Domain(s) for 3wap:
  12. Domain(s) for 3x0w:
    1. 2159231Domain d3x0wa1: 3x0w A:29-145 [268087]
      Other proteins in same PDB: d3x0wa2, d3x0wb2
      automated match to d3waoa_
    2. 2159232Domain d3x0wb1: 3x0w B:29-145 [268088]
      Other proteins in same PDB: d3x0wa2, d3x0wb2
      automated match to d3waoa_
  13. Domain(s) for 4co7:
    1. 2159218Domain d4co7a1: 4co7 A:1-117 [268235]
      Other proteins in same PDB: d4co7a2, d4co7b2
      automated match to d3dowa_
    2. 2159219Domain d4co7b1: 4co7 B:1-117 [268236]
      Other proteins in same PDB: d4co7a2, d4co7b2
      automated match to d3dowa_
  14. Domain(s) for 4waa:
    1. 2159220Domain d4waaa1: 4waa A:18-134 [276754]
      Other proteins in same PDB: d4waaa2, d4waab2
      automated match to d3waoa_
    2. 2159221Domain d4waab1: 4waa B:18-134 [276759]
      Other proteins in same PDB: d4waaa2, d4waab2
      automated match to d3waoa_
  15. Domain(s) for 4zdv:
  16. Domain(s) for 5cx3:
    1. 2276964Domain d5cx3a_: 5cx3 A: [320265]
      automated match to d3wanb_
      complexed with gol
    2. 2276965Domain d5cx3d_: 5cx3 D: [320266]
      automated match to d3wanb_
      complexed with gol
    3. 2277004Domain d5cx3b_: 5cx3 B: [320305]
      automated match to d3wanb_
      complexed with gol
    4. 2277023Domain d5cx3c_: 5cx3 C: [320324]
      automated match to d3wanb_
      complexed with gol
  17. Domain(s) for 5dcn:
  18. Domain(s) for 5dpr:
    1. 2279912Domain d5dprb_: 5dpr B: [323213]
      automated match to d3wanb_
    2. 2279913Domain d5dprd_: 5dpr D: [323214]
      automated match to d3wanb_
    3. 2279962Domain d5dpra_: 5dpr A: [323263]
      automated match to d3wanb_
    4. 2279965Domain d5dprc_: 5dpr C: [323266]
      automated match to d3wanb_
  19. Domain(s) for 5dpw:
    1. 2279909Domain d5dpwk_: 5dpw K: [323210]
      automated match to d3wapa_
    2. 2279915Domain d5dpwe_: 5dpw E: [323216]
      automated match to d3wapa_
    3. 2279916Domain d5dpwc_: 5dpw C: [323217]
      automated match to d3wapa_
    4. 2279928Domain d5dpwa_: 5dpw A: [323229]
      automated match to d3wapa_
    5. 2279933Domain d5dpwi_: 5dpw I: [323234]
      automated match to d3wapa_
    6. 2279946Domain d5dpwm_: 5dpw M: [323247]
      automated match to d3wapa_
    7. 2279947Domain d5dpwg_: 5dpw G: [323248]
      automated match to d3wapa_
    8. 2280054Domain d5dpwo_: 5dpw O: [323355]
      automated match to d3wapa_
  20. Domain(s) for 5ms2:
  21. Domain(s) for 5ms5:
    1. 2289913Domain d5ms5a1: 5ms5 A:4-117 [333214]
      Other proteins in same PDB: d5ms5a2
      automated match to d3waoa_
      complexed with gol, so4
    2. 2289917Domain d5ms5b1: 5ms5 B:4-118 [333218]
      Other proteins in same PDB: d5ms5a2
      automated match to d3waoa_
      complexed with gol, so4
  22. Domain(s) for 5ms6:
    1. 2289940Domain d5ms6b1: 5ms6 B:3-117 [333241]
      Other proteins in same PDB: d5ms6a2, d5ms6b2
      automated match to d3waoa_
    2. 2290043Domain d5ms6a1: 5ms6 A:4-117 [333344]
      Other proteins in same PDB: d5ms6a2, d5ms6b2
      automated match to d3waoa_
  23. Domain(s) for 5v4k:
    1. 2291014Domain d5v4ka_: 5v4k A: [334315]
      automated match to d3waoa_
      complexed with gol, so4
    2. 2291026Domain d5v4kb_: 5v4k B: [334327]
      automated match to d3waoa_
      complexed with gol, so4

More info for Species Human (Homo sapiens) [TaxId:9606] from d.15.1.3 automated matches

Timeline for Species Human (Homo sapiens) [TaxId:9606] from d.15.1.3 automated matches: