SCOPe 2.08: Family d.15.1.3: GABARAP-like

Lineage for Family d.15.1.3: GABARAP-like

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.15: beta-Grasp (ubiquitin-like) [54235] (15 superfamilies)
   core: beta(2)-alpha-beta(2); mixed beta-sheet 2143

4. Superfamily d.15.1: Ubiquitin-like [54236] (11 families)

5. Family d.15.1.3: GABARAP-like [54253] (4 proteins)
   intracellular membrane trafficking and fusion proteins
   automatically mapped to Pfam PF02991

Proteins:

1. GABA(A) receptor associated protein GABARAP [69658] (3 species)

   1. Species Human (Homo sapiens) [TaxId:9606] [69659] (9 PDB entries)

   2. Species Mouse (Mus musculus) [TaxId:10090] [352623] (2 PDB entries)

   3. Species Norway rat (Rattus norvegicus) [TaxId:10116] [75360] (1 PDB entry)

2. Golgi-associated ATPase enhancer of 16 kD, Gate-16 [54254] (1 species)

   • Species Cow (Bos taurus) [TaxId:9913] [54255] (1 PDB entry)

3. Microtubule-associated proteins 1A/1B light chain 3B [110802] (3 species)

   1. Species Human (Homo sapiens) [TaxId:9606] [117820] (1 PDB entry)
      Uniprot Q9GZQ8

   2. Species Mouse (Mus musculus) [TaxId:10090] [419783] (2 PDB entries)

   3. Species Norway rat (Rattus norvegicus) [TaxId:10116] [110803] (2 PDB entries)
      Uniprot Q62625 4-116

4. automated matches [190358] (6 species)
   not a true protein

   1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188724] (3 PDB entries)

   2. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [189812] (4 PDB entries)

   3. Species Human (Homo sapiens) [TaxId:9606] [187279] (33 PDB entries)

   4. Species Mouse (Mus musculus) [TaxId:10090] [352580] (2 PDB entries)

   5. Species Norway rat (Rattus norvegicus) [TaxId:10116] [187189] (3 PDB entries)

   6. Species Silkworm (Bombyx mori) [TaxId:7091] [189398] (1 PDB entry)

More info for Family d.15.1.3: GABARAP-like

Timeline for Family d.15.1.3: GABARAP-like:

• Family d.15.1.3: GABARAP-like first appeared (with stable ids) in SCOP 1.55, called Family d.15.1.3: Golgi-associated ATPase enhancer of 16 kD, Gate-16
  
• Family d.15.1.3: GABARAP-like appears in SCOPe 2.07