SCOPe 2.08: Protein: Bacterial alpha-Amylase

Lineage for Protein: Bacterial alpha-Amylase

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.71: Glycosyl hydrolase domain [51010] (1 superfamily)
folded sheet; greek-key
Superfamily b.71.1: Glycosyl hydrolase domain [51011] (6 families)
this domain is C-terminal to the catalytic beta/alpha barrel domain
Family b.71.1.1: alpha-Amylases, C-terminal beta-sheet domain [51012] (22 proteins)
this domain follows the catalytic beta/alpha barrel domain
Protein Bacterial alpha-Amylase [51013] (9 species)

Species:

Bacillus halmapalus [TaxId:79882] [141551] (1 PDB entry)
Uniprot P19571 432-518
- Domain for 1w9x:
  - Domain d1w9xa1: 1w9x A:399-485 [120799]
    Other proteins in same PDB: d1w9xa2
    complexed with ca, na
Bacillus licheniformis [TaxId:1402] [51014] (13 PDB entries)
1. Domain for 1bli:
  - Domain d1blia1: 1bli A:394-483 [27715]
    Other proteins in same PDB: d1blia2
    complexed with ca, na
2. Domain for 1bpl:
  - Domain d1bplb1: 1bpl B:394-482 [27716]
    Other proteins in same PDB: d1bpl.1
3. Domain for 1e3x:
  - Domain d1e3xa1: 1e3x A:394-483 [59211]
    Other proteins in same PDB: d1e3xa2
    complexed with ca, na
4. Domain for 1e3z:
  - Domain d1e3za1: 1e3z A:394-483 [59213]
    Other proteins in same PDB: d1e3za2
    complexed with aci, ca, na
5. Domain for 1e40:
  - Domain d1e40a1: 1e40 A:394-483 [59215]
    Other proteins in same PDB: d1e40a2
    complexed with ca, na, trs
6. Domain for 1e43:
  - Domain d1e43a1: 1e43 A:394-483 [59217]
    Other proteins in same PDB: d1e43a2
    complexed with ca, na
7. Domain for 1ob0:
  - Domain d1ob0a1: 1ob0 A:394-483 [81256]
    Other proteins in same PDB: d1ob0a2
    complexed with ca, na
8. Domain for 1vjs:
  - Domain d1vjsa1: 1vjs A:394-482 [27714]
    Other proteins in same PDB: d1vjsa2
9. Domain for 6toy:
  - Domain d6toya2: 6toy A:394-483 [392016]
    Other proteins in same PDB: d6toya1
    automated match to d1hvxa1
    complexed with acy, ca, fmt, mli, na
10. Domain for 6toz:
  - Domain d6toza2: 6toz A:394-483 [392030]
    Other proteins in same PDB: d6toza1
    automated match to d1hvxa1
    complexed with ac1, acy, ca, glc, na
11. Domain for 6tp0:
  - Domain d6tp0a2: 6tp0 A:394-483 [391981]
    Other proteins in same PDB: d6tp0a1
    automated match to d1hvxa1
    complexed with acy, ca, glc, mli, na
12. Domain for 6tp1:
  - Domain d6tp1a2: 6tp1 A:394-483 [392008]
    Other proteins in same PDB: d6tp1a1
    automated match to d1hvxa1
    complexed with acy, ca, glc, mli, na
13. Domain for 6tp2:
  - Domain d6tp2a2: 6tp2 A:394-483 [392026]
    Other proteins in same PDB: d6tp2a1
    automated match to d1hvxa1
    complexed with ca, glc, mli, na
Bacillus sp. 707 [TaxId:1416] [117297] (4 PDB entries)
Uniprot P19571 38-518
1. Domain for 1wp6:
  - Domain d1wp6a1: 1wp6 A:399-485 [114781]
    Other proteins in same PDB: d1wp6a2
    complexed with ca, na, po4, trs
2. Domain for 1wpc:
  - Domain d1wpca1: 1wpc A:399-485 [114799]
    Other proteins in same PDB: d1wpca2
    complexed with aci, ca, na
3. Domain for 2d3l:
  - Domain d2d3la1: 2d3l A:399-485 [131210]
    Other proteins in same PDB: d2d3la2
    complexed with ca, glc, na
4. Domain for 2d3n:
  - Domain d2d3na1: 2d3n A:399-485 [131212]
    Other proteins in same PDB: d2d3na2
    automated match to d1wpca1
    complexed with ca, glc, na
Bacillus sp., ksm-k38 [TaxId:1409] [89382] (6 PDB entries)
1. Domain for 1ud2:
  - Domain d1ud2a1: 1ud2 A:391-480 [88469]
    Other proteins in same PDB: d1ud2a2
    complexed with gol, na
2. Domain for 1ud3:
  - Domain d1ud3a1: 1ud3 A:391-480 [88471]
    Other proteins in same PDB: d1ud3a2
    complexed with na; mutant
3. Domain for 1ud4:
  - Domain d1ud4a1: 1ud4 A:391-480 [88473]
    Other proteins in same PDB: d1ud4a2
    complexed with na
4. Domain for 1ud5:
  - Domain d1ud5a1: 1ud5 A:391-480 [88475]
    Other proteins in same PDB: d1ud5a2
    complexed with na, rb
5. Domain for 1ud6:
  - Domain d1ud6a1: 1ud6 A:391-480 [88477]
    Other proteins in same PDB: d1ud6a2
    complexed with k
6. Domain for 1ud8:
  - Domain d1ud8a1: 1ud8 A:391-480 [88479]
    Other proteins in same PDB: d1ud8a2
    complexed with na
Bacillus stearothermophilus [TaxId:1422] [51017] (1 PDB entry)
- Domain for 1hvx:
  - Domain d1hvxa1: 1hvx A:394-483 [27721]
    Other proteins in same PDB: d1hvxa2
    complexed with ca, na
Bacillus subtilis [TaxId:1423] [51016] (2 PDB entries)
Uniprot P00691
1. Domain for 1bag:
  - Domain d1baga1: 1bag A:348-425 [27720]
    Other proteins in same PDB: d1baga2
    complexed with ca
2. Domain for 1ua7:
  - Domain d1ua7a1: 1ua7 A:348-425 [107759]
    Other proteins in same PDB: d1ua7a2
    complexed with aci, ca
Halothermothrix orenii [TaxId:31909] [141552] (1 PDB entry)
Uniprot Q8GPL8 437-515
- Domain for 1wza:
  - Domain d1wzaa1: 1wza A:437-515 [121489]
    Other proteins in same PDB: d1wzaa2
    complexed with ca
Pseudoalteromonas haloplanktis [TaxId:228] [51015] (9 PDB entries)
1. Domain for 1aqh:
  - Domain d1aqha1: 1aqh A:355-448 [27718]
    Other proteins in same PDB: d1aqha2
    complexed with ca, cl
2. Domain for 1aqm:
  - Domain d1aqma1: 1aqm A:355-448 [27717]
    Other proteins in same PDB: d1aqma2
    complexed with ca, cl, trs
3. Domain for 1b0i:
  - Domain d1b0ia1: 1b0i A:355-448 [27719]
    Other proteins in same PDB: d1b0ia2
    complexed with ca, cl
4. Domain for 1g94:
  - Domain d1g94a1: 1g94 A:355-448 [65169]
    Other proteins in same PDB: d1g94a2
    complexed with ca, cl, trs
5. Domain for 1g9h:
  - Domain d1g9ha1: 1g9h A:355-448 [70162]
    Other proteins in same PDB: d1g9ha2
    complexed with ca, cl, trs
6. Domain for 1jd7:
  - Domain d1jd7a1: 1jd7 A:355-448 [77104]
    Other proteins in same PDB: d1jd7a2
    complexed with ca, cl; mutant
7. Domain for 1jd9:
  - Domain d1jd9a1: 1jd9 A:355-448 [77106]
    Other proteins in same PDB: d1jd9a2
    complexed with ca; mutant
8. Domain for 1kxh:
  - Domain d1kxha1: 1kxh A:355-448 [73151]
    Other proteins in same PDB: d1kxha2
    complexed with ca, cl; mutant
9. Domain for 1l0p:
  - Domain d1l0pa1: 1l0p A:355-448 [73406]
    Other proteins in same PDB: d1l0pa2
    complexed with ca, no3
Pyrococcus woesei [TaxId:2262] [89383] (3 PDB entries)
1. Domain for 1mwo:
  - Domain d1mwoa1: 1mwo A:362-434 [85159]
    Other proteins in same PDB: d1mwoa2
    complexed with ca, zn
    fragment; missing more than one-third of the common structure and/or sequence
2. Domain for 1mxd:
  - Domain d1mxda1: 1mxd A:362-435 [85191]
    Other proteins in same PDB: d1mxda2
    complexed with act, ca, glc, zn
    fragment; missing more than one-third of the common structure and/or sequence
3. Domain for 1mxg:
  - Domain d1mxga1: 1mxg A:362-435 [85193]
    Other proteins in same PDB: d1mxga2
    complexed with ca, eoh, ete, mg, trs, zn
    fragment; missing more than one-third of the common structure and/or sequence

More info for Protein Bacterial alpha-Amylase from b.71.1.1: alpha-Amylases, C-terminal beta-sheet domain

Timeline for Protein Bacterial alpha-Amylase from b.71.1.1: alpha-Amylases, C-terminal beta-sheet domain:

Protein Bacterial alpha-Amylase from b.71.1.1: alpha-Amylases, C-terminal beta-sheet domain first appeared (with stable ids) in SCOP 1.55
Protein Bacterial alpha-Amylase from b.71.1.1: alpha-Amylases, C-terminal beta-sheet domain appears in SCOPe 2.07