SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

Family e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain [100888] (5 proteins)
contains a distinct 'fingers' domain possibly related to the C-terminal subdomain of hypothetical protein Ta1206 (1qw2)
in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain

Protein automated matches [231300] (5 species)
not a true protein

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [231489] (6 PDB entries)
1. Domains for 2wtf:
  1. Domain d2wtfa1: 2wtf A:1-389 [231490]
    Other proteins in same PDB: d2wtfa2, d2wtfb2
    automated match to d1jiha2
    protein/DNA complex; complexed with ca, cpt, dtp
  2. Domain d2wtfb1: 2wtf B:1-389 [231493]
    Other proteins in same PDB: d2wtfa2, d2wtfb2
    automated match to d1jiha2
    protein/DNA complex; complexed with ca, cpt, dtp
2. Domains for 2xgp:
  1. Domain d2xgpa1: 2xgp A:1-389 [244503]
    Other proteins in same PDB: d2xgpa2, d2xgpa3, d2xgpb2, d2xgpb3
    automated match to d2wtfa1
    protein/DNA complex; complexed with ca
  2. Domain d2xgpb1: 2xgp B:1-389 [244505]
    Other proteins in same PDB: d2xgpa2, d2xgpa3, d2xgpb2, d2xgpb3
    automated match to d2wtfa1
    protein/DNA complex; complexed with ca
3. Domains for 2xgq:
  1. Domain d2xgqa1: 2xgq A:1-389 [244507]
    Other proteins in same PDB: d2xgqa2, d2xgqa3, d2xgqb2, d2xgqb3
    automated match to d2wtfa1
    protein/DNA complex; complexed with ca
  2. Domain d2xgqb1: 2xgq B:1-389 [244509]
    Other proteins in same PDB: d2xgqa2, d2xgqa3, d2xgqb2, d2xgqb3
    automated match to d2wtfa1
    protein/DNA complex; complexed with ca
4. Domain for 3mfh:
  - Domain d3mfha1: 3mfh A:1-389 [232911]
    Other proteins in same PDB: d3mfha2
    automated match to d1jiha2
    protein/DNA complex; complexed with dtp, mg, so4
5. Domain for 3oha:
  - Domain d3ohaa1: 3oha A:1-389 [248270]
    Other proteins in same PDB: d3ohaa2, d3ohaa3
    automated match to d3mfha1
    protein/DNA complex; complexed with dcp, mg, so4
6. Domain for 3ohb:
  - Domain d3ohba1: 3ohb A:1-389 [248272]
    Other proteins in same PDB: d3ohba2, d3ohba3
    automated match to d3mfha1
    protein/DNA complex; complexed with dcp, mg, so4
Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [348040] (1 PDB entry)
- Domain for 5vtp:
  - Domain d5vtpa1: 5vtp A:1-389 [348041]
    Other proteins in same PDB: d5vtpa2, d5vtpa3
    automated match to d3ohba1
    complexed with mg
Sulfolobus acidocaldarius [TaxId:2285] [236243] (1 PDB entry)
- Domain for 4nlg:
  - Domain d4nlga1: 4nlg A:1-241 [236244]
    Other proteins in same PDB: d4nlga2
    automated match to d3bq1a2
    protein/DNA complex; complexed with ca, dcp
Sulfolobus solfataricus [TaxId:2287] [255036] (2 PDB entries)
1. Domains for 2atl:
  1. Domain d2atla2: 2atl A:2-240 [127297]
    Other proteins in same PDB: d2atla1, d2atla3, d2atlb1, d2atlb3
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dcp
  2. Domain d2atlb2: 2atl B:1002-1240 [127299]
    Other proteins in same PDB: d2atla1, d2atla3, d2atlb1, d2atlb3
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dcp
2. Domains for 2au0:
  1. Domain d2au0a2: 2au0 A:2-240 [127319]
    Other proteins in same PDB: d2au0a1, d2au0a3, d2au0b1, d2au0b3
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca
  2. Domain d2au0b2: 2au0 B:1002-1240 [127321]
    Other proteins in same PDB: d2au0a1, d2au0a3, d2au0b1, d2au0b3
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca
Sulfolobus solfataricus [TaxId:273057] [231301] (28 PDB entries)
1. Domain for 2c22:
  - Domain d2c22a2: 2c22 A:1-240 [129656]
    Other proteins in same PDB: d2c22a1
    automated match to d2v4ra1
    complexed with ca, dgt
2. Domain for 2c28:
  - Domain d2c28a2: 2c28 A:1-240 [129661]
    Other proteins in same PDB: d2c28a1
    automated match to d2v4ra1
    complexed with ca, dg
3. Domain for 2c2d:
  - Domain d2c2da2: 2c2d A:1-240 [129665]
    Other proteins in same PDB: d2c2da1
    automated match to d2v4ra1
    complexed with ca, dtp
4. Domain for 2c2e:
  - Domain d2c2ea2: 2c2e A:1-240 [129667]
    Other proteins in same PDB: d2c2ea1
    automated match to d2v4ra1
    complexed with ca, dcp
5. Domain for 2c2r:
  - Domain d2c2ra2: 2c2r A:1-240 [129681]
    Other proteins in same PDB: d2c2ra1
    automated match to d2v4ra1
    complexed with ca, dct
6. Domain for 2j6s:
  - Domain d2j6sa2: 2j6s A:1-240 [138090]
    Other proteins in same PDB: d2j6sa1
    automated match to d2v4ra1
    protein/DNA complex; complexed with ca, dtp
7. Domain for 2j6t:
  - Domain d2j6ta2: 2j6t A:1-240 [138092]
    Other proteins in same PDB: d2j6ta1
    automated match to d2v4ra1
    protein/DNA complex; complexed with ca, dtp
8. Domain for 2j6u:
  - Domain d2j6ua2: 2j6u A:4-243 [138094]
    Other proteins in same PDB: d2j6ua1, d2j6ua3
    automated match to d2v4ra1
    protein/DNA complex; complexed with ca, dgt
9. Domain for 2jef:
  - Domain d2jefa2: 2jef A:1-240 [138279]
    Other proteins in same PDB: d2jefa1, d2jefa3
    automated match to d2v4ra1
    protein/DNA complex; complexed with ca, dgt
10. Domain for 2jeg:
  - Domain d2jega2: 2jeg A:1-240 [138281]
    Other proteins in same PDB: d2jega1, d2jega3
    automated match to d2v4ra1
    complexed with ca, dgt
11. Domain for 2jei:
  - Domain d2jeia2: 2jei A:1-240 [138283]
    Other proteins in same PDB: d2jeia1, d2jeia3
    automated match to d2v4ra1
    complexed with ca, dgt
12. Domain for 2jej:
  - Domain d2jeja2: 2jej A:1-240 [138285]
    Other proteins in same PDB: d2jeja1
    automated match to d2v4ra1
    complexed with ca, dgt
13. Domain for 2uvr:
  - Domain d2uvra2: 2uvr A:1-240 [139981]
    Other proteins in same PDB: d2uvra1
    automated match to d1jx4a2
    complexed with ca, dgt; mutant
14. Domain for 2uvu:
  - Domain d2uvua2: 2uvu A:1-240 [139983]
    Other proteins in same PDB: d2uvua1, d2uvua3
    automated match to d1jx4a2
    complexed with ca, dgt; mutant
15. Domain for 2uvv:
  - Domain d2uvva2: 2uvv A:1-240 [139985]
    Other proteins in same PDB: d2uvva1
    automated match to d1jx4a2
    complexed with ca, dgt; mutant
16. Domain for 2uvw:
  - Domain d2uvwa2: 2uvw A:1-240 [139987]
    Other proteins in same PDB: d2uvwa1
    automated match to d1jx4a2
    complexed with ca, dgt; mutant
17. Domain for 2v4q:
  - Domain d2v4qa1: 2v4q A:1-240 [231318]
    Other proteins in same PDB: d2v4qa2
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dgt
18. Domain for 2v4r:
  - Domain d2v4ra1: 2v4r A:2-241 [231302]
    Other proteins in same PDB: d2v4ra2, d2v4ra3
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dgt
19. Domain for 2v4s:
  - Domain d2v4sa1: 2v4s A:1-240 [304495]
    Other proteins in same PDB: d2v4sa2, d2v4sa3
    automated match to d1jx4a2
    complexed with da, dc, dg, dgt, dt, mg, n2g
20. Domain for 2v4t:
  - Domain d2v4ta1: 2v4t A:1-240 [304498]
    Other proteins in same PDB: d2v4ta2, d2v4ta3
    automated match to d1jx4a2
    complexed with da, dc, dg, dgt, dt, mg, n2g
21. Domains for 2v9w:
  1. Domain d2v9wa2: 2v9w A:1-240 [152812]
    Other proteins in same PDB: d2v9wa1, d2v9wb1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dct
  2. Domain d2v9wb2: 2v9w B:1-240 [152814]
    Other proteins in same PDB: d2v9wa1, d2v9wb1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dct
22. Domains for 2va2:
  1. Domain d2va2a2: 2va2 A:1-240 [152816]
    Other proteins in same PDB: d2va2a1, d2va2b1, d2va2b3
    automated match to d2v4ra1
    protein/DNA complex; complexed with ca, dct
  2. Domain d2va2b2: 2va2 B:1-240 [152818]
    Other proteins in same PDB: d2va2a1, d2va2b1, d2va2b3
    automated match to d2v4ra1
    protein/DNA complex; complexed with ca, dct
23. Domain for 2va3:
  - Domain d2va3a2: 2va3 A:1-240 [152820]
    Other proteins in same PDB: d2va3a1
    automated match to d2va2a3
    protein/DNA complex; complexed with ca, dgt
24. Domain for 2w8k:
  - Domain d2w8ka1: 2w8k A:1-240 [244047]
    Other proteins in same PDB: d2w8ka2, d2w8ka3
    automated match to d1jx4a2
    protein/DNA complex; complexed with dgt, mg
25. Domain for 2w8l:
  - Domain d2w8la1: 2w8l A:1-240 [244049]
    Other proteins in same PDB: d2w8la2, d2w8la3
    automated match to d1jx4a2
    protein/DNA complex; complexed with dgt, mg
26. Domain for 2w9a:
  - Domain d2w9aa1: 2w9a A:1-240 [244063]
    Other proteins in same PDB: d2w9aa2, d2w9aa3
    automated match to d2v4ra1
    protein/DNA complex; complexed with dgt, mg
27. Domains for 2w9b:
  1. Domain d2w9ba1: 2w9b A:1-240 [231376]
    Other proteins in same PDB: d2w9ba2, d2w9bb2, d2w9bb3
    automated match to d1jx4a2
    protein/DNA complex; complexed with mg
  2. Domain d2w9bb1: 2w9b B:1-240 [238936]
    Other proteins in same PDB: d2w9ba2, d2w9bb2, d2w9bb3
    automated match to d2v4ra1
    protein/DNA complex; complexed with mg
28. Domains for 2w9c:
  1. Domain d2w9ca1: 2w9c A:1-240 [231377]
    Other proteins in same PDB: d2w9ca2, d2w9cb2
    automated match to d1jx4a2
    protein/DNA complex; complexed with mg, ttp
  2. Domain d2w9cb1: 2w9c B:1-240 [238938]
    Other proteins in same PDB: d2w9ca2, d2w9cb2
    automated match to d2v4ra1
    protein/DNA complex; complexed with mg, ttp

More info for Protein automated matches from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain

Timeline for Protein automated matches from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain:

Protein automated matches from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain first appeared in SCOPe 2.03
Protein automated matches from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain appears in SCOPe 2.07