Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2568173Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
  3. 2571153Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 2571154Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 2572686Family e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain [100888] (5 proteins)
    contains a distinct 'fingers' domain possibly related to the C-terminal subdomain of hypothetical protein Ta1206 (1qw2)
  6. 2572791Protein automated matches [231300] (5 species)
    not a true protein

Species:

  1. 2572792Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [231489] (6 PDB entries)
    1. Domains for 2wtf:
      1. 2572796Domain d2wtfa1: 2wtf A:1-389 [231490]
        Other proteins in same PDB: d2wtfa2, d2wtfb2
        automated match to d1jiha2
        protein/DNA complex; complexed with ca, cpt, dtp
      2. 2572797Domain d2wtfb1: 2wtf B:1-389 [231493]
        Other proteins in same PDB: d2wtfa2, d2wtfb2
        automated match to d1jiha2
        protein/DNA complex; complexed with ca, cpt, dtp
    2. Domains for 2xgp:
      1. 2572798Domain d2xgpa1: 2xgp A:1-389 [244503]
        Other proteins in same PDB: d2xgpa2, d2xgpa3, d2xgpb2, d2xgpb3
        automated match to d2wtfa1
        protein/DNA complex; complexed with ca
      2. 2572799Domain d2xgpb1: 2xgp B:1-389 [244505]
        Other proteins in same PDB: d2xgpa2, d2xgpa3, d2xgpb2, d2xgpb3
        automated match to d2wtfa1
        protein/DNA complex; complexed with ca
    3. Domains for 2xgq:
      1. 2572800Domain d2xgqa1: 2xgq A:1-389 [244507]
        Other proteins in same PDB: d2xgqa2, d2xgqa3, d2xgqb2, d2xgqb3
        automated match to d2wtfa1
        protein/DNA complex; complexed with ca
      2. 2572801Domain d2xgqb1: 2xgq B:1-389 [244509]
        Other proteins in same PDB: d2xgqa2, d2xgqa3, d2xgqb2, d2xgqb3
        automated match to d2wtfa1
        protein/DNA complex; complexed with ca
    4. Domain for 3mfh:
    5. Domain for 3oha:
    6. Domain for 3ohb:
  2. 2572802Sulfolobus acidocaldarius [TaxId:2285] [236243] (1 PDB entry)
  3. 2572804Sulfolobus solfataricus [TaxId:2287] [255036] (2 PDB entries)
    1. Domains for 2atl:
      1. 2572805Domain d2atla2: 2atl A:2-240 [127297]
        Other proteins in same PDB: d2atla1, d2atla3, d2atlb1, d2atlb3
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca, dcp
      2. 2572806Domain d2atlb2: 2atl B:1002-1240 [127299]
        Other proteins in same PDB: d2atla1, d2atla3, d2atlb1, d2atlb3
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca, dcp
    2. Domains for 2au0:
      1. 2572807Domain d2au0a2: 2au0 A:2-240 [127319]
        Other proteins in same PDB: d2au0a1, d2au0a3, d2au0b1, d2au0b3
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca
      2. 2572808Domain d2au0b2: 2au0 B:1002-1240 [127321]
        Other proteins in same PDB: d2au0a1, d2au0a3, d2au0b1, d2au0b3
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca
  4. 2572809Sulfolobus solfataricus [TaxId:273057] [231301] (28 PDB entries)
    1. Domain for 2c22:
    2. Domain for 2c28:
    3. Domain for 2c2d:
    4. Domain for 2c2e:
    5. Domain for 2c2r:
    6. Domain for 2j6s:
    7. Domain for 2j6t:
    8. Domain for 2j6u:
    9. Domain for 2jef:
    10. Domain for 2jeg:
    11. Domain for 2jei:
    12. Domain for 2jej:
    13. Domain for 2uvr:
    14. Domain for 2uvu:
    15. Domain for 2uvv:
    16. Domain for 2uvw:
    17. Domain for 2v4q:
    18. Domain for 2v4r:
    19. Domain for 2v4s:
    20. Domain for 2v4t:
    21. Domains for 2v9w:
      1. 2572835Domain d2v9wa2: 2v9w A:1-240 [152812]
        Other proteins in same PDB: d2v9wa1, d2v9wb1
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca, dct
      2. 2572836Domain d2v9wb2: 2v9w B:1-240 [152814]
        Other proteins in same PDB: d2v9wa1, d2v9wb1
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca, dct
    22. Domains for 2va2:
      1. 2572833Domain d2va2a2: 2va2 A:1-240 [152816]
        Other proteins in same PDB: d2va2a1, d2va2b1, d2va2b3
        automated match to d2v4ra1
        protein/DNA complex; complexed with ca, dct
      2. 2572834Domain d2va2b2: 2va2 B:1-240 [152818]
        Other proteins in same PDB: d2va2a1, d2va2b1, d2va2b3
        automated match to d2v4ra1
        protein/DNA complex; complexed with ca, dct
    23. Domain for 2va3:
    24. Domain for 2w8k:
    25. Domain for 2w8l:
    26. Domain for 2w9a:
    27. Domains for 2w9b:
      1. 2572823Domain d2w9ba1: 2w9b A:1-240 [231376]
        Other proteins in same PDB: d2w9ba2, d2w9bb2, d2w9bb3
        automated match to d1jx4a2
        protein/DNA complex; complexed with mg
      2. 2572824Domain d2w9bb1: 2w9b B:1-240 [238936]
        Other proteins in same PDB: d2w9ba2, d2w9bb2, d2w9bb3
        automated match to d2v4ra1
        protein/DNA complex; complexed with mg
    28. Domains for 2w9c:
      1. 2572840Domain d2w9ca1: 2w9c A:1-240 [231377]
        Other proteins in same PDB: d2w9ca2, d2w9cb2
        automated match to d1jx4a2
        protein/DNA complex; complexed with mg, ttp
      2. 2572841Domain d2w9cb1: 2w9c B:1-240 [238938]
        Other proteins in same PDB: d2w9ca2, d2w9cb2
        automated match to d2v4ra1
        protein/DNA complex; complexed with mg, ttp
  5. 3047978Saccharomyces cerevisiae [TaxId:559292] [348040] (1 PDB entry)

More info for Protein automated matches from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain

Timeline for Protein automated matches from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain:

  • Protein automated matches from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain first appeared in SCOPe 2.03
  • Protein automated matches from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain appears in SCOPe 2.06