PDB entry 2atl

View 2atl on RCSB PDB site
Description: Unmodified Insertion Ternary Complex
Class: transferase/DNA
Keywords: DNA polymerase, Y-family, lesion bypass, transferase-DNA COMPLEX
Deposited on 2005-08-25, released 2006-01-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.227
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dpo4 polymerase IV
    Species: Sulfolobus solfataricus [TaxId:2287]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q97W02
      • cloning artifact (8)
    Domains in SCOPe 2.08: d2atla1, d2atla2, d2atla3
  • Chain 'B':
    Compound: Dpo4 polymerase IV
    Species: Sulfolobus solfataricus [TaxId:2287]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q97W02 (9-End)
      • cloning artifact (8)
    Domains in SCOPe 2.08: d2atlb1, d2atlb2, d2atlb3
  • Chain 'D':
    Compound: 5'-d(*gp*gp*tp*tp*gp*gp*ap*tp*gp*gp*tp*ap*(ddg))-3'
  • Chain 'E':
    Compound: 5'-d(*cp*t*ap*ap*cp*gp*cp*tp*ap*cp*cp*ap*tp*cp*cp*ap*ap*cp*c)-3'
  • Chain 'H':
    Compound: 5'-d(*gp*gp*tp*tp*gp*gp*ap*tp*gp*gp*tp*ap*(ddg))-3'
  • Chain 'J':
    Compound: 5'-d(*cp*t*ap*ap*cp*gp*cp*tp*ap*cp*cp*ap*tp*cp*cp*ap*ap*cp*c)-3'
  • Heterogens: CA, DCP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2atlA (A:)
gshmgggggivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyeark
fgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldis
dkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevk
rlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislarde
ynepirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavted
ldivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt

    Sequence, based on observed residues (ATOM records): (download) 
    >2atlA (A:)
givlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2atlB (B:)
gshmgggggivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyeark
fgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldis
dkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevk
rlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislarde
ynepirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavted
ldivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt

    Sequence, based on observed residues (ATOM records): (download) 
    >2atlB (B:)
givlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfi

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'J':
    No sequence available.