PDB entry 2j6u

View 2j6u on RCSB PDB site
Description: Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dGTP.
Class: transferase/DNA
Keywords: transferase/DNA, transferase-DNA complex, mutator protein, DNA replication, o6-methylguanine, transferase, metal-binding, DNA polymerase, translesion DNA synthesis, DNA-directed DNA polymerase, dpo4, magnesium, DNA repair, DNA damage, DNA-binding, nucleotidyltransferase, sulfolobus solfataricus
Deposited on 2006-10-04, released 2006-11-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-10-21, with a file datestamp of 2015-10-16.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase IV
    Species: SULFOLOBUS SOLFATARICUS [TaxId:273057]
    Database cross-references and differences (RAF-indexed):
    • PDB 2J6U (Start-5)
    • Uniprot Q97W02 (6-End)
    Domains in SCOPe 2.08: d2j6ua1, d2j6ua2, d2j6ua3
  • Chain 'P':
    Compound: 5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap *tp*tp*cp*t)-3'
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'T':
    Compound: 5'-d(*tp*cp*ap*c g32p*gp*ap*ap*tp*cp*cp *tp*tp*cp*cp*cp*cp*c)-3'
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: CA, DGT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2j6uA (A:)
hhhhhhmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfg
vkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdk
vrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrl
ireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeyn
epirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedld
ivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt

    Sequence, based on observed residues (ATOM records): (download) 
    >2j6uA (A:)
hhhmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvka
gipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrd
yreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlire
ldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepi
rtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivs
rgrtfphgisketaysesvkllqkileederkirrigvrfskfie

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.