PDB entry 2v4r
View 2v4r on RCSB PDB site
Description: Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosine
Class: transferase
Keywords: DNA-directed DNA polymerase, DNA-binding, metal-binding, DNA replication, mutator protein, nucleotidyltransferase, DNA adduct, DNA damage, DNA repair, transferase, dpo4, m1dg, cytoplasm, magnesium
Deposited on
2008-09-26, released
2009-06-16
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-10-16, with a file datestamp of
2019-10-11.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase IV
Species: SULFOLOBUS SOLFATARICUS [TaxId:273057]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2v4ra1, d2v4ra2, d2v4ra3 - Chain 'P':
Compound: 5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*tp*tp*c)-3'
Species: synthetic construct, synthetic [TaxId:32630]
- Chain 'T':
Compound: 5'-d(*tp*cp*ap*cp*m1gp*gp*ap*ap*tp*cp*cp *tp*tp*cp*cp*cp*cp*c)-3'
Species: synthetic construct, synthetic [TaxId:32630]
- Heterogens: DGT, CA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2v4rA (A:)
hhhhhhmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfg
vkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdk
vrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrl
ireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeyn
epirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedld
ivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
Sequence, based on observed residues (ATOM records): (download)
>2v4rA (A:)
hmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagi
piveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyr
eaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireld
iadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirt
rvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrg
rtfphgisketaysesvkllqkileederkirrigvrfskfie
- Chain 'P':
No sequence available.
- Chain 'T':
No sequence available.