Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds) |
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily) divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members |
Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families) "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain |
Family e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain [100888] (5 proteins) contains a distinct 'fingers' domain possibly related to the C-terminal subdomain of hypothetical protein Ta1206 (1qw2) |
Protein automated matches [231300] (5 species) not a true protein |
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [231489] (6 PDB entries) |
Domain d2wtfa1: 2wtf A:1-389 [231490] Other proteins in same PDB: d2wtfa2, d2wtfb2 automated match to d1jiha2 protein/DNA complex; complexed with ca, cpt, dtp |
Domain d2wtfb1: 2wtf B:1-389 [231493] Other proteins in same PDB: d2wtfa2, d2wtfb2 automated match to d1jiha2 protein/DNA complex; complexed with ca, cpt, dtp |
Domain d2xgpa1: 2xgp A:1-389 [244503] Other proteins in same PDB: d2xgpa2, d2xgpa3, d2xgpb2, d2xgpb3 automated match to d2wtfa1 protein/DNA complex; complexed with ca |
Domain d2xgpb1: 2xgp B:1-389 [244505] Other proteins in same PDB: d2xgpa2, d2xgpa3, d2xgpb2, d2xgpb3 automated match to d2wtfa1 protein/DNA complex; complexed with ca |
Domain d2xgqa1: 2xgq A:1-389 [244507] Other proteins in same PDB: d2xgqa2, d2xgqa3, d2xgqb2, d2xgqb3 automated match to d2wtfa1 protein/DNA complex; complexed with ca |
Domain d2xgqb1: 2xgq B:1-389 [244509] Other proteins in same PDB: d2xgqa2, d2xgqa3, d2xgqb2, d2xgqb3 automated match to d2wtfa1 protein/DNA complex; complexed with ca |
Domain d3mfha1: 3mfh A:1-389 [232911] Other proteins in same PDB: d3mfha2 automated match to d1jiha2 protein/DNA complex; complexed with dtp, mg, so4 |
Domain d3ohaa1: 3oha A:1-389 [248270] Other proteins in same PDB: d3ohaa2, d3ohaa3 automated match to d3mfha1 protein/DNA complex; complexed with dcp, mg, so4 |
Domain d3ohba1: 3ohb A:1-389 [248272] Other proteins in same PDB: d3ohba2, d3ohba3 automated match to d3mfha1 protein/DNA complex; complexed with dcp, mg, so4 |
Saccharomyces cerevisiae [TaxId:559292] [348040] (1 PDB entry) |
Domain d5vtpa1: 5vtp A:1-389 [348041] Other proteins in same PDB: d5vtpa2, d5vtpa3 automated match to d3ohba1 complexed with mg |
Sulfolobus acidocaldarius [TaxId:2285] [236243] (1 PDB entry) |
Domain d4nlga1: 4nlg A:1-241 [236244] Other proteins in same PDB: d4nlga2 automated match to d3bq1a2 protein/DNA complex; complexed with ca, dcp |
Sulfolobus solfataricus [TaxId:2287] [255036] (2 PDB entries) |
Domain d2atla2: 2atl A:2-240 [127297] Other proteins in same PDB: d2atla1, d2atla3, d2atlb1, d2atlb3 automated match to d1jx4a2 protein/DNA complex; complexed with ca, dcp |
Domain d2atlb2: 2atl B:1002-1240 [127299] Other proteins in same PDB: d2atla1, d2atla3, d2atlb1, d2atlb3 automated match to d1jx4a2 protein/DNA complex; complexed with ca, dcp |
Domain d2au0a2: 2au0 A:2-240 [127319] Other proteins in same PDB: d2au0a1, d2au0a3, d2au0b1, d2au0b3 automated match to d1jx4a2 protein/DNA complex; complexed with ca |
Domain d2au0b2: 2au0 B:1002-1240 [127321] Other proteins in same PDB: d2au0a1, d2au0a3, d2au0b1, d2au0b3 automated match to d1jx4a2 protein/DNA complex; complexed with ca |
Sulfolobus solfataricus [TaxId:273057] [231301] (28 PDB entries) |
Domain d2c22a2: 2c22 A:1-240 [129656] Other proteins in same PDB: d2c22a1 automated match to d2v4ra1 complexed with ca, dgt |
Domain d2c28a2: 2c28 A:1-240 [129661] Other proteins in same PDB: d2c28a1 automated match to d2v4ra1 complexed with ca, dg |
Domain d2c2da2: 2c2d A:1-240 [129665] Other proteins in same PDB: d2c2da1 automated match to d2v4ra1 complexed with ca, dtp |
Domain d2c2ea2: 2c2e A:1-240 [129667] Other proteins in same PDB: d2c2ea1 automated match to d2v4ra1 complexed with ca, dcp |
Domain d2c2ra2: 2c2r A:1-240 [129681] Other proteins in same PDB: d2c2ra1 automated match to d2v4ra1 complexed with ca, dct |
Domain d2j6sa2: 2j6s A:1-240 [138090] Other proteins in same PDB: d2j6sa1 automated match to d2v4ra1 protein/DNA complex; complexed with ca, dtp |
Domain d2j6ta2: 2j6t A:1-240 [138092] Other proteins in same PDB: d2j6ta1 automated match to d2v4ra1 protein/DNA complex; complexed with ca, dtp |
Domain d2j6ua2: 2j6u A:4-243 [138094] Other proteins in same PDB: d2j6ua1, d2j6ua3 automated match to d2v4ra1 protein/DNA complex; complexed with ca, dgt |
Domain d2jefa2: 2jef A:1-240 [138279] Other proteins in same PDB: d2jefa1, d2jefa3 automated match to d2v4ra1 protein/DNA complex; complexed with ca, dgt |
Domain d2jega2: 2jeg A:1-240 [138281] Other proteins in same PDB: d2jega1, d2jega3 automated match to d2v4ra1 complexed with ca, dgt |
Domain d2jeia2: 2jei A:1-240 [138283] Other proteins in same PDB: d2jeia1, d2jeia3 automated match to d2v4ra1 complexed with ca, dgt |
Domain d2jeja2: 2jej A:1-240 [138285] Other proteins in same PDB: d2jeja1 automated match to d2v4ra1 complexed with ca, dgt |
Domain d2uvra2: 2uvr A:1-240 [139981] Other proteins in same PDB: d2uvra1 automated match to d1jx4a2 complexed with ca, dgt; mutant |
Domain d2uvua2: 2uvu A:1-240 [139983] Other proteins in same PDB: d2uvua1, d2uvua3 automated match to d1jx4a2 complexed with ca, dgt; mutant |
Domain d2uvva2: 2uvv A:1-240 [139985] Other proteins in same PDB: d2uvva1 automated match to d1jx4a2 complexed with ca, dgt; mutant |
Domain d2uvwa2: 2uvw A:1-240 [139987] Other proteins in same PDB: d2uvwa1 automated match to d1jx4a2 complexed with ca, dgt; mutant |
Domain d2v4qa1: 2v4q A:1-240 [231318] Other proteins in same PDB: d2v4qa2 automated match to d1jx4a2 protein/DNA complex; complexed with ca, dgt |
Domain d2v4ra1: 2v4r A:2-241 [231302] Other proteins in same PDB: d2v4ra2, d2v4ra3 automated match to d1jx4a2 protein/DNA complex; complexed with ca, dgt |
Domain d2v4sa1: 2v4s A:1-240 [304495] Other proteins in same PDB: d2v4sa2, d2v4sa3 automated match to d1jx4a2 complexed with da, dc, dg, dgt, dt, mg, n2g |
Domain d2v4ta1: 2v4t A:1-240 [304498] Other proteins in same PDB: d2v4ta2, d2v4ta3 automated match to d1jx4a2 complexed with da, dc, dg, dgt, dt, mg, n2g |
Domain d2v9wa2: 2v9w A:1-240 [152812] Other proteins in same PDB: d2v9wa1, d2v9wb1 automated match to d1jx4a2 protein/DNA complex; complexed with ca, dct |
Domain d2v9wb2: 2v9w B:1-240 [152814] Other proteins in same PDB: d2v9wa1, d2v9wb1 automated match to d1jx4a2 protein/DNA complex; complexed with ca, dct |
Domain d2va2a2: 2va2 A:1-240 [152816] Other proteins in same PDB: d2va2a1, d2va2b1, d2va2b3 automated match to d2v4ra1 protein/DNA complex; complexed with ca, dct |
Domain d2va2b2: 2va2 B:1-240 [152818] Other proteins in same PDB: d2va2a1, d2va2b1, d2va2b3 automated match to d2v4ra1 protein/DNA complex; complexed with ca, dct |
Domain d2va3a2: 2va3 A:1-240 [152820] Other proteins in same PDB: d2va3a1 automated match to d2va2a3 protein/DNA complex; complexed with ca, dgt |
Domain d2w8ka1: 2w8k A:1-240 [244047] Other proteins in same PDB: d2w8ka2, d2w8ka3 automated match to d1jx4a2 protein/DNA complex; complexed with dgt, mg |
Domain d2w8la1: 2w8l A:1-240 [244049] Other proteins in same PDB: d2w8la2, d2w8la3 automated match to d1jx4a2 protein/DNA complex; complexed with dgt, mg |
Domain d2w9aa1: 2w9a A:1-240 [244063] Other proteins in same PDB: d2w9aa2, d2w9aa3 automated match to d2v4ra1 protein/DNA complex; complexed with dgt, mg |
Domain d2w9ba1: 2w9b A:1-240 [231376] Other proteins in same PDB: d2w9ba2, d2w9bb2, d2w9bb3 automated match to d1jx4a2 protein/DNA complex; complexed with mg |
Domain d2w9bb1: 2w9b B:1-240 [238936] Other proteins in same PDB: d2w9ba2, d2w9bb2, d2w9bb3 automated match to d2v4ra1 protein/DNA complex; complexed with mg |
Domain d2w9ca1: 2w9c A:1-240 [231377] Other proteins in same PDB: d2w9ca2, d2w9cb2 automated match to d1jx4a2 protein/DNA complex; complexed with mg, ttp |
Domain d2w9cb1: 2w9c B:1-240 [238938] Other proteins in same PDB: d2w9ca2, d2w9cb2 automated match to d2v4ra1 protein/DNA complex; complexed with mg, ttp |
Timeline for Protein automated matches from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain: