PDB entry 2jef
View 2jef on RCSB PDB site
Description: The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect Pairing
Class: transferase/DNA
Keywords: DNA replication, mutator protein, nucleotidyltransferase, DNA-directed DNA polymerase, dpo4, magnesium, DNA damage, DNA repair, alkylating agents, translesion synthesis, transferase-DNA complex, DNA-binding, metal-binding
Deposited on
2007-01-17, released
2007-03-13
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-05-08, with a file datestamp of
2019-05-03.
Experiment type: XRAY
Resolution: 2.17 Å
R-factor: N/A
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase IV
Species: SULFOLOBUS SOLFATARICUS [TaxId:273057]
Database cross-references and differences (RAF-indexed):
- PDB 2JEF (Start-5)
- Uniprot Q97W02 (6-End)
Domains in SCOPe 2.08: d2jefa1, d2jefa2, d2jefa3 - Chain 'P':
Compound: 5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*tp*tp*cp*doc)-3'
- Chain 'T':
Compound: 5'-d(*tp*cp*ap*cp*bzgp*gp*ap*ap*tp*cp*cp*tp*tp*cp*cp cp*cp*c)-3'
- Heterogens: DGT, CA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2jefA (A:)
hhhhhhmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfg
vkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdk
vrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrl
ireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeyn
epirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedld
ivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
Sequence, based on observed residues (ATOM records): (download)
>2jefA (A:)
hmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagi
piveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyr
eaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireld
iadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirt
rvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrg
rtfphgisketaysesvkllqkileederkirrigvrfskfie
- Chain 'P':
No sequence available.
- Chain 'T':
No sequence available.