PDB entry 2v4t
View 2v4t on RCSB PDB site
Description: y-family DNA polymerase dpo4 bypassing n2-naphthyl-guanine adduct in anti orientation
Class: transferase
Keywords: DNA-directed DNA polymerase, DNA, dpo4, adduct, n2-alkyl, cytoplasm, magnesium, transferase, metal-binding, mutator protein, DNA replication, nucleotidyltransferase, polymerase, DNA damage, DNA repair, DNA-binding
Deposited on
2008-09-26, released
2008-12-16
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-01-27, with a file datestamp of
2009-01-23.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.226
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase IV
Species: SULFOLOBUS SOLFATARICUS [TaxId:273057]
Database cross-references and differences (RAF-indexed):
- PDB 2V4T (6-23)
- Uniprot Q97W02 (6-End)
Domains in SCOPe 2.08: d2v4ta1, d2v4ta2, d2v4ta3 - Chain 'P':
Compound: 5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap *tp*tp*cp*doc)-3'
- Chain 'T':
Compound: 5'-d(*tp*cp*ap*cp*n2gp*gp*ap*ap*tp*cp *cp*tp*tp*cp*cp*cp*cp*c)-3'
- Heterogens: DG, DA, DT, DC, N2G, DGT, MG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2v4tA (A:)
hhhhhhmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfg
vkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdk
vrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrl
ireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeyn
epirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedld
ivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
Sequence, based on observed residues (ATOM records): (download)
>2v4tA (A:)
hmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagi
piveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyr
eaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireld
iadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirt
rvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrg
rtfphgisketaysesvkllqkileederkirrigvrfskfie
- Chain 'P':
No sequence available.
- Chain 'T':
No sequence available.