PDB entry 2v9w
View 2v9w on RCSB PDB site
Description: complex structure of sulfolobus solfataricus dpo4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand
Class: transferase
Keywords: DNA-directed DNA polymerase, p2 DNA polymerase IV, nucleotidyltransferase, mutator protein, DNA replication, 4-difluorotoluene, DNA repair, DNA-binding, transferase, metal-binding, translesion DNA polymerase, ddctp, cytoplasm, magnesium, DNA damage
Deposited on
2007-08-27, released
2007-10-30
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.218
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase IV
Species: SULFOLOBUS SOLFATARICUS [TaxId:273057]
Database cross-references and differences (RAF-indexed):
- PDB 2V9W (6-23)
- Uniprot Q97W02 (6-End)
Domains in SCOPe 2.08: d2v9wa1, d2v9wa2 - Chain 'B':
Compound: DNA polymerase IV
Species: SULFOLOBUS SOLFATARICUS [TaxId:273057]
Database cross-references and differences (RAF-indexed):
- PDB 2V9W (6-23)
- Uniprot Q97W02 (6-End)
Domains in SCOPe 2.08: d2v9wb1, d2v9wb2 - Chain 'C':
Compound: 5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap *cp*tp*g)-3'
- Chain 'D':
Compound: 5'-d(*tp*tp*cp*ap*gp*dftp*ap*gp*tp*cp*cp *tp*tp*cp*cp*cp*cp*c)-3'
- Chain 'E':
Compound: 5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap *cp*tp*g)-3'
- Chain 'F':
Compound: 5'-d(*tp*tp*cp*ap*gp*dftp*ap*gp*tp*cp*cp *tp*tp*cp*cp*cp*cp*c)-3'
- Heterogens: CA, DCT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2v9wA (A:)
hhhhhhmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfg
vkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdk
vrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrl
ireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeyn
epirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedld
ivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
Sequence, based on observed residues (ATOM records): (download)
>2v9wA (A:)
mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfieai
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2v9wB (B:)
hhhhhhmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfg
vkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdk
vrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrl
ireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeyn
epirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedld
ivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
Sequence, based on observed residues (ATOM records): (download)
>2v9wB (B:)
mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfiea
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.