Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2387558Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 2387559Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 2387560Family b.47.1.1: Prokaryotic proteases [50495] (16 proteins)
  6. 2387759Protein automated matches [190306] (8 species)
    not a true protein

Species:

  1. 2387760Escherichia coli K-12 [TaxId:83333] [225952] (8 PDB entries)
    1. Domains for 3lgi:
      1. 2387761Domain d3lgia_: 3lgi A: [212874]
        automated match to d2qf3a1
        complexed with po4
      2. 2387762Domain d3lgib_: 3lgi B: [212875]
        automated match to d2qf3a1
        complexed with po4
      3. 2387763Domain d3lgic_: 3lgi C: [212876]
        automated match to d2qf3a1
        complexed with po4
    2. Domain for 3lgt:
    3. Domain for 3lgu:
    4. Domains for 3lgv:
      1. 2387778Domain d3lgva_: 3lgv A: [232837]
        automated match to d3lgib_
        mutant
      2. 2387779Domain d3lgvb_: 3lgv B: [239414]
        automated match to d3lgva_
        mutant
      3. 2387780Domain d3lgvc_: 3lgv C: [239415]
        automated match to d3lgva_
        mutant
      4. 2387781Domain d3lgvd_: 3lgv D: [239416]
        automated match to d3lgva_
        mutant
      5. 2387782Domain d3lgve_: 3lgv E: [239417]
        automated match to d3lgva_
        mutant
      6. 2387783Domain d3lgvf_: 3lgv F: [239418]
        automated match to d3lgva_
        mutant
      7. 2387784Domain d3lgvg_: 3lgv G: [239419]
        automated match to d3lgva_
        mutant
      8. 2387785Domain d3lgvh_: 3lgv H: [239420]
        automated match to d3lgva_
        mutant
      9. 2387786Domain d3lgvi_: 3lgv I: [239421]
        automated match to d3lgva_
        mutant
    5. Domain for 3lgw:
    6. Domain for 3lgy:
    7. Domain for 3lh1:
    8. Domains for 3lh3:
      1. 2387764Domain d3lh3a_: 3lh3 A: [232841]
        automated match to d3lgib_
      2. 2387765Domain d3lh3b_: 3lh3 B: [239422]
        automated match to d3lh3a_
      3. 2387766Domain d3lh3c_: 3lh3 C: [239423]
        automated match to d3lh3a_
      4. 2387767Domain d3lh3d_: 3lh3 D: [239424]
        automated match to d3lh3a_
      5. 2387768Domain d3lh3e_: 3lh3 E: [239425]
        automated match to d3lh3a_
      6. 2387769Domain d3lh3f_: 3lh3 F: [239426]
        automated match to d3lh3a_
      7. 2387770Domain d3lh3g_: 3lh3 G: [239427]
        automated match to d3lh3a_
      8. 2387771Domain d3lh3h_: 3lh3 H: [239428]
        automated match to d3lh3a_
      9. 2387772Domain d3lh3i_: 3lh3 I: [239429]
        automated match to d3lh3a_
  2. 2387787Human (Homo sapiens) [TaxId:9606] [322167] (8 PDB entries)
    1. Domain for 5fht:
    2. Domain for 5m3n:
    3. Domain for 5m3o:
    4. Domain for 5tny:
    5. Domain for 5tnz:
    6. Domain for 5to0:
    7. Domain for 5to1:
    8. Domain for 5wyn:
  3. 2387795Lysobacter enzymogenes [TaxId:69] [189631] (4 PDB entries)
    1. Domain for 3m7t:
    2. Domain for 3m7u:
    3. Domains for 4nsv:
      1. 2387797Domain d4nsva_: 4nsv A: [257188]
        automated match to d1arba_
        complexed with 2oy, cl, so4; mutant
      2. 2387798Domain d4nsvb_: 4nsv B: [257995]
        automated match to d1arba_
        complexed with 2oy, cl, so4; mutant
    4. Domains for 4nsy:
      1. 2387799Domain d4nsya_: 4nsy A: [257189]
        automated match to d1arba_
        complexed with 2oy, ca, cl
      2. 2387800Domain d4nsyb_: 4nsy B: [257996]
        automated match to d1arba_
        complexed with 2oy, ca, cl
  4. 2387802Staphylococcus aureus [TaxId:1280] [316235] (1 PDB entry)
  5. 2387805Staphylococcus epidermidis [TaxId:176280] [227720] (1 PDB entry)
  6. 2387807Streptomyces griseus [TaxId:1911] [187119] (8 PDB entries)
    1. Domain for 2gkv:
    2. Domain for 2nu0:
    3. Domain for 2nu1:
    4. Domain for 2nu2:
    5. Domain for 2nu3:
    6. Domain for 2nu4:
    7. Domain for 2qa9:
    8. Domains for 2qaa:
      1. 2387808Domain d2qaaa_: 2qaa A: [150201]
        automated match to d1sgde_
        complexed with acy, cl, edo, epe, gol, so4, tyr
      2. 2387809Domain d2qaab_: 2qaa B: [150202]
        automated match to d1sgde_
        complexed with acy, cl, edo, epe, gol, so4, tyr
  7. 2387817Yersinia pestis [TaxId:214092] [317139] (1 PDB entry)
  8. 3046579Lysobacter sp. [TaxId:186334] [346641] (1 PDB entry)

More info for Protein automated matches from b.47.1.1: Prokaryotic proteases

Timeline for Protein automated matches from b.47.1.1: Prokaryotic proteases: