PDB entry 5jd8

View 5jd8 on RCSB PDB site
Description: Crystal structure of the serine endoprotease from Yersinia pestis
Class: hydrolase
Keywords: DegS, Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, HYDROLASE
Deposited on 2016-04-15, released 2016-05-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Periplasmic serine peptidase DegS
    Species: Yersinia pestis CO92 [TaxId:214092]
    Gene: degS, AK38_3169
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5jd8a1, d5jd8a2
  • Heterogens: CXS, PEG, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5jd8A (A:)
pgylfsgksnnvneevptsynqavrraapavvnvynrslsatqqglairtlgsgvimsdk
gyiltnkhvindaeqiivamqngriseallvgsdnltdlavlkidatnlpvipininrtp
higdvvlaignpynlgqtvtqgiisatgriglsssgrqnflqtdasinqgnsggalvntl
gelmgintlsfdksnngetpegigfaiptalatkvmeklirdgrvirgyigitgeeyppf
nandngsdrvhgikvkkvspdgpaaqagihvgdiilnvnnkpatsvietmdqvaevrpgt
tipvlllrngqqiavqititeldqnemlttqaad

    Sequence, based on observed residues (ATOM records): (download) 
    >5jd8A (A:)
evptsynqavrraapavvnvynrslairtlgsgvimsdkgyiltnkhvindaeqiivamq
ngriseallvgsdnltdlavlkidatnlpvipininrtphigdvvlaignpynlgqtvtq
giisatgrinflqtdasinqgnsggalvntlgelmgintlsfetpegigfaiptalatkv
meklirdgrvirgyigitgegikvkkvspdgpaaqagihvgdiilnvnnkpatsvietmd
qvaevrpgttipvlllrngqqiavqititeld