SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
Superfamily d.15.1: Ubiquitin-like [54236] (9 families)
Family d.15.1.0: automated matches [191343] (1 protein)
not a true family
Protein automated matches [190233] (11 species)
not a true protein

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [186998] (6 PDB entries)

Domains for 2bwe:

Domain d2bwet_: 2bwe T: [129361]
Other proteins in same PDB: d2bwea1, d2bweb_, d2bwec_, d2bwed_, d2bwee_, d2bwef_, d2bweg_, d2bweh_, d2bwei_, d2bwej_, d2bwek_, d2bwel_, d2bwem_, d2bwen_, d2bweo_, d2bwep_, d2bweq_, d2bwer_, d2bwes1
automated match to d2bwfa_

Domain d2bweu_: 2bwe U: [129362]
Other proteins in same PDB: d2bwea1, d2bweb_, d2bwec_, d2bwed_, d2bwee_, d2bwef_, d2bweg_, d2bweh_, d2bwei_, d2bwej_, d2bwek_, d2bwel_, d2bwem_, d2bwen_, d2bweo_, d2bwep_, d2bweq_, d2bwer_, d2bwes1
automated match to d2bwfa_

Domains for 2bwf:
1. Domain d2bwfa_: 2bwf A: [129363]
  automated match to d1bt0a_
  complexed with fmt
2. Domain d2bwfb_: 2bwf B: [129364]
  automated match to d1bt0a_
  complexed with fmt
Domain for 3m63:
- Domain d3m63b_: 3m63 B: [232888]
  automated match to d3v6eb_
  complexed with 1pe, k
Domains for 3zdm:
1. Domain d3zdmc_: 3zdm C: [265787]
  automated match to d2dzia_
2. Domain d3zdmf_: 3zdm F: [265788]
  automated match to d2dzia_
Domain for 4a20:
- Domain d4a20a_: 4a20 A: [265896]
  automated match to d2dzia_
  complexed with so4
Domain for 4asw:
- Domain d4aswc_: 4asw C: [265906]
  automated match to d2dzia_

Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [193300] (5 PDB entries)
1. Domain for 2lxa:
  - Domain d2lxaa_: 2lxa A: [264378]
    automated match to d2dzia_
2. Domain for 2lxc:
  - Domain d2lxca_: 2lxc A: [264379]
    automated match to d2dzia_
3. Domain for 3w1s:
  - Domain d3w1sc_: 3w1s C: [193301]
    automated match to d1wz3a1
4. Domain for 4hcn:
  - Domain d4hcnb_: 4hcn B: [222506]
    automated match to d3dbhi_
    complexed with fmt, peg, po4
5. Domains for 4nnj:
  1. Domain d4nnjb_: 4nnj B: [257173]
    automated match to d3dbhi_
    complexed with amp, gol, so4
  2. Domain d4nnjd_: 4nnj D: [259837]
    automated match to d3dbhi_
    complexed with amp, gol, so4
  3. Domain d4nnje_: 4nnj E: [263171]
    automated match to d3dbhi_
    complexed with amp, gol, so4
Candidatus caldiarchaeum [TaxId:311458] [274223] (1 PDB entry)
- Domain for 2mqj:
  - Domain d2mqja_: 2mqj A: [274224]
    automated match to d4mdkh_
Chicken (Gallus gallus) [TaxId:9031] [254873] (2 PDB entries)
1. Domain for 2j0m:
  - Domain d2j0ma3: 2j0m A:31-130 [147847]
    Other proteins in same PDB: d2j0ma1, d2j0ma2, d2j0mb_
    automated match to d2al6b3
    complexed with 4st
2. Domain for 3zdt:
  - Domain d3zdtb1: 3zdt B:35-130 [250759]
    Other proteins in same PDB: d3zdtb2, d3zdtb3
    automated match to d2al6b3
    mutant
Fruit fly (Drosophila melanogaster) [TaxId:7227] [255352] (1 PDB entry)
- Domain for 2kjr:
  - Domain d2kjra_: 2kjr A: [242540]
    automated match to d1v6ea_
Human (Homo sapiens) [TaxId:9606] [187090] (45 PDB entries)
1. Domain for 1yx5:
  - Domain d1yx5b_: 1yx5 B: [124172]
    automated match to d1uela_
2. Domain for 1yx6:
  - Domain d1yx6b_: 1yx6 B: [124173]
    automated match to d1uela_
3. Domain for 2bf8:
  - Domain d2bf8b_: 2bf8 B: [128412]
    Other proteins in same PDB: d2bf8a_
    automated match to d2ckhb1
4. Domain for 2dhz:
  - Domain d2dhza_: 2dhz A: [241569]
    automated match to d1wgya_
5. Domain for 2dzi:
  - Domain d2dzia_: 2dzi A: [241671]
    automated match to d3dbhi_
6. Domain for 2faz:
  - Domain d2fazb_: 2faz B: [133224]
    Other proteins in same PDB: d2faza1
    automated match to d1c3ta_
7. Domain for 2he7:
  - Domain d2he7a1: 2he7 A:108-190 [242028]
    Other proteins in same PDB: d2he7a2, d2he7a3
    automated match to d1gg3a3
8. Domain for 2hj8:
  - Domain d2hj8a_: 2hj8 A: [242038]
    automated match to d3phxb_
9. Domain for 2iy0:
  - Domain d2iy0b_: 2iy0 B: [137787]
    Other proteins in same PDB: d2iy0a1, d2iy0c1
    automated match to d2ckhb1
    mutant
10. Domains for 2iy1:
  1. Domain d2iy1b_: 2iy1 B: [137788]
    Other proteins in same PDB: d2iy1a_, d2iy1c_
    automated match to d2ckhb1
    mutant
  2. Domain d2iy1d_: 2iy1 D: [137789]
    Other proteins in same PDB: d2iy1a_, d2iy1c_
    automated match to d2ckhb1
    mutant
11. Domain for 2jxx:
  - Domain d2jxxa_: 2jxx A: [242308]
    automated match to d2eked_
12. Domain for 2kdb:
  - Domain d2kdba_: 2kdb A: [242464]
    automated match to d1wgda_
13. Domain for 2klc:
  - Domain d2klca_: 2klc A: [242550]
    automated match to d1yqba1
14. Domain for 2l05:
  - Domain d2l05a_: 2l05 A: [242718]
    automated match to d3ny5b_
15. Domain for 2l7r:
  - Domain d2l7ra_: 2l7r A: [242799]
    automated match to d3v6eb_
16. Domain for 2uyz:
  - Domain d2uyzb_: 2uyz B: [140039]
    Other proteins in same PDB: d2uyza1
    automated match to d2ckhb1
    complexed with na
17. Domain for 2vrr:
  - Domain d2vrrb_: 2vrr B: [153523]
    Other proteins in same PDB: d2vrra_
    automated match to d2ckhb1
    complexed with fmt, na
18. Domain for 3dbs:
  - Domain d3dbsa1: 3dbs A:143-321 [245620]
    Other proteins in same PDB: d3dbsa2, d3dbsa3, d3dbsa4
    automated match to d1e7ua3
    complexed with gd9
19. Domains for 3ny5:
  1. Domain d3ny5a_: 3ny5 A: [182620]
    automated match to d1rfaa_
  2. Domain d3ny5b_: 3ny5 B: [182621]
    automated match to d1rfaa_
  3. Domain d3ny5c_: 3ny5 C: [182622]
    automated match to d1rfaa_
  4. Domain d3ny5d_: 3ny5 D: [182623]
    automated match to d1rfaa_
20. Domain for 3phx:
  - Domain d3phxb_: 3phx B: [214804]
    automated match to d4ii2b_
    complexed with acy, neh, zn
21. Domains for 3qij:
  1. Domain d3qija1: 3qij A:209-290 [248902]
    Other proteins in same PDB: d3qija2, d3qija3, d3qijb2, d3qijb3
    automated match to d1gg3a3
    complexed with unx
  2. Domain d3qijb1: 3qij B:208-290 [248905]
    Other proteins in same PDB: d3qija2, d3qija3, d3qijb2, d3qijb3
    automated match to d1gg3a3
    complexed with unx
22. Domains for 3r66:
  1. Domain d3r66c1: 3r66 C:4-78 [233409]
    Other proteins in same PDB: d3r66a_, d3r66b_, d3r66c2, d3r66d2
    automated match to d1z2ma1
  2. Domain d3r66d1: 3r66 D:4-78 [233410]
    Other proteins in same PDB: d3r66a_, d3r66b_, d3r66c2, d3r66d2
    automated match to d1z2ma1
23. Domain for 3rd2:
  - Domain d3rd2a_: 3rd2 A: [184885]
    automated match to d1u4aa1
24. Domains for 3sdl:
  1. Domain d3sdlc1: 3sdl C:4-78 [239724]
    Other proteins in same PDB: d3sdla_, d3sdlb_, d3sdlc2, d3sdld2
    automated match to d3r66c1
  2. Domain d3sdld1: 3sdl D:4-78 [239726]
    Other proteins in same PDB: d3sdla_, d3sdlb_, d3sdlc2, d3sdld2
    automated match to d3r66c1
25. Domains for 3u8z:
  1. Domain d3u8za1: 3u8z A:20-103 [250151]
    Other proteins in same PDB: d3u8za2, d3u8zb2, d3u8zc2, d3u8zc3, d3u8zd2
    automated match to d1gc7a3
  2. Domain d3u8zb1: 3u8z B:20-103 [250153]
    Other proteins in same PDB: d3u8za2, d3u8zb2, d3u8zc2, d3u8zc3, d3u8zd2
    automated match to d1gc7a3
  3. Domain d3u8zc1: 3u8z C:20-103 [250155]
    Other proteins in same PDB: d3u8za2, d3u8zb2, d3u8zc2, d3u8zc3, d3u8zd2
    automated match to d1gc7a3
  4. Domain d3u8zd1: 3u8z D:20-103 [250158]
    Other proteins in same PDB: d3u8za2, d3u8zb2, d3u8zc2, d3u8zc3, d3u8zd2
    automated match to d1gc7a3
26. Domain for 3vvw:
  - Domain d3vvwb_: 3vvw B: [193944]
    automated match to d2zjdc_
27. Domain for 3wam:
  - Domain d3wama_: 3wam A: [230200]
    automated match to d3vtva_
    complexed with cit
28. Domain for 3zvv:
  - Domain d3zvva1: 3zvv A:144-321 [250875]
    Other proteins in same PDB: d3zvva2, d3zvva3, d3zvva4
    automated match to d1e7ua3
    complexed with xaz
29. Domain for 3zw3:
  - Domain d3zw3a1: 3zw3 A:144-321 [250879]
    Other proteins in same PDB: d3zw3a2, d3zw3a3
    automated match to d1e7ua3
    complexed with zw3
30. Domain for 4anu:
  - Domain d4anua1: 4anu A:143-321 [251079]
    Other proteins in same PDB: d4anua2, d4anua3, d4anua4
    automated match to d1e7ua3
    complexed with em7, so4
31. Domain for 4anv:
  - Domain d4anva1: 4anv A:144-321 [251083]
    Other proteins in same PDB: d4anva2, d4anva3, d4anva4
    automated match to d1e7ua3
    complexed with 751, so4
32. Domain for 4anw:
  - Domain d4anwa1: 4anw A:143-321 [251087]
    Other proteins in same PDB: d4anwa2, d4anwa3, d4anwa4
    automated match to d1e7ua3
    complexed with o92, so4
33. Domain for 4anx:
  - Domain d4anxa1: 4anx A:143-321 [251091]
    Other proteins in same PDB: d4anxa2, d4anxa3, d4anxa4
    automated match to d1e7ua3
    complexed with 534
34. Domains for 4gdk:
  1. Domain d4gdka_: 4gdk A: [221855]
    automated match to d4gdla_
    complexed with na
  2. Domain d4gdkd_: 4gdk D: [221856]
    automated match to d4gdla_
    complexed with na
35. Domain for 4gdl:
  - Domain d4gdla_: 4gdl A: [193346]
    automated match to d1wz3a1
    complexed with na
36. Domain for 4hle:
  - Domain d4hlea1: 4hle A:147-320 [252463]
    Other proteins in same PDB: d4hlea2, d4hlea3, d4hlea4
    automated match to d1e7ua3
    complexed with 17v
37. Domain for 4j6i:
  - Domain d4j6ia1: 4j6i A:143-321 [252815]
    Other proteins in same PDB: d4j6ia2, d4j6ia3, d4j6ia4
    automated match to d1e7ua3
    complexed with 1jv
38. Domains for 4naw:
  1. Domain d4nawa_: 4naw A: [228876]
    automated match to d4gdla_
    complexed with na, so4
  2. Domain d4nawe_: 4naw E: [228875]
    automated match to d4gdla_
    complexed with na, so4
  3. Domain d4nawi_: 4naw I: [228878]
    automated match to d4gdla_
    complexed with na, so4
  4. Domain d4nawm_: 4naw M: [228877]
    automated match to d4gdla_
    complexed with na, so4
39. Domain for 4npn:
  - Domain d4npna_: 4npn A: [260331]
    automated match to d2ekec_
40. Domains for 4ny0:
  1. Domain d4ny0a1: 4ny0 A:34-130 [254031]
    Other proteins in same PDB: d4ny0a2, d4ny0a3, d4ny0b2, d4ny0b3, d4ny0d2, d4ny0d3
    automated match to d2al6b3
  2. Domain d4ny0b1: 4ny0 B:34-130 [254034]
    Other proteins in same PDB: d4ny0a2, d4ny0a3, d4ny0b2, d4ny0b3, d4ny0d2, d4ny0d3
    automated match to d2al6b3
  3. Domain d4ny0d1: 4ny0 D:34-130 [254037]
    Other proteins in same PDB: d4ny0a2, d4ny0a3, d4ny0b2, d4ny0b3, d4ny0d2, d4ny0d3
    automated match to d2al6b3
41. Domain for 4urk:
  - Domain d4urka1: 4urk A:144-321 [260597]
    Other proteins in same PDB: d4urka2, d4urka3, d4urka4
    automated match to d1e7ua3
    complexed with a82
42. Domains for 4wip:
  1. Domain d4wipa_: 4wip A: [272733]
    automated match to d1wspb_
    complexed with 1pe
  2. Domain d4wipb_: 4wip B: [272738]
    automated match to d1wspb_
    complexed with 1pe
  3. Domain d4wipc_: 4wip C: [272739]
    automated match to d1wspb_
    complexed with 1pe
43. Domains for 4xkl:
  1. Domain d4xkla_: 4xkl A: [279369]
    automated match to d4nnjb_
    complexed with act, gol, zn
  2. Domain d4xklc_: 4xkl C: [279370]
    automated match to d4nnjb_
    complexed with act, gol, zn
44. Domains for 4zri:
  1. Domain d4zria1: 4zri A:20-103 [274140]
    Other proteins in same PDB: d4zria2, d4zria3, d4zrib2, d4zrib3
    automated match to d1h4ra3
  2. Domain d4zrib1: 4zri B:21-103 [274137]
    Other proteins in same PDB: d4zria2, d4zria3, d4zrib2, d4zrib3
    automated match to d1h4ra3
45. Domain for 4zrj:
  - Domain d4zrja1: 4zrj A:19-103 [274134]
    Other proteins in same PDB: d4zrja2, d4zrja3
    automated match to d1ni2a3
    complexed with gol
Mouse (Mus musculus) [TaxId:10090] [189205] (6 PDB entries)
1. Domains for 2d2q:
  1. Domain d2d2qa3: 2d2q A:3-87 [131184]
    Other proteins in same PDB: d2d2qa1, d2d2qa2, d2d2qb1, d2d2qb2
    automated match to d1gc7a3
  2. Domain d2d2qb3: 2d2q B:3-87 [131187]
    Other proteins in same PDB: d2d2qa1, d2d2qa2, d2d2qb1, d2d2qb2
    automated match to d1gc7a3
2. Domains for 3a4r:
  1. Domain d3a4ra_: 3a4r A: [171722]
    automated match to d1wm2a_
    complexed with edo, so4
  2. Domain d3a4rb_: 3a4r B: [171723]
    automated match to d1wm2a_
    complexed with edo, so4
3. Domains for 3a4s:
  1. Domain d3a4sc_: 3a4s C: [171726]
    Other proteins in same PDB: d3a4sa_, d3a4sb_
    automated match to d1wm2a_
    protein/RNA complex
  2. Domain d3a4sd_: 3a4s D: [171727]
    Other proteins in same PDB: d3a4sa_, d3a4sb_
    automated match to d1wm2a_
    protein/RNA complex
4. Domains for 3wa0:
  1. Domain d3wa0a1: 3wa0 A:24-103 [256457]
    Other proteins in same PDB: d3wa0a2, d3wa0a3, d3wa0b2, d3wa0b3, d3wa0c2, d3wa0c3, d3wa0d2, d3wa0d3, d3wa0e2, d3wa0e3, d3wa0f2, d3wa0f3
    automated match to d1h4ra3
  2. Domain d3wa0b1: 3wa0 B:23-103 [262354]
    Other proteins in same PDB: d3wa0a2, d3wa0a3, d3wa0b2, d3wa0b3, d3wa0c2, d3wa0c3, d3wa0d2, d3wa0d3, d3wa0e2, d3wa0e3, d3wa0f2, d3wa0f3
    automated match to d1h4ra3
  3. Domain d3wa0c1: 3wa0 C:21-103 [262357]
    Other proteins in same PDB: d3wa0a2, d3wa0a3, d3wa0b2, d3wa0b3, d3wa0c2, d3wa0c3, d3wa0d2, d3wa0d3, d3wa0e2, d3wa0e3, d3wa0f2, d3wa0f3
    automated match to d1h4ra3
  4. Domain d3wa0d1: 3wa0 D:19-103 [262360]
    Other proteins in same PDB: d3wa0a2, d3wa0a3, d3wa0b2, d3wa0b3, d3wa0c2, d3wa0c3, d3wa0d2, d3wa0d3, d3wa0e2, d3wa0e3, d3wa0f2, d3wa0f3
    automated match to d1h4ra3
  5. Domain d3wa0e1: 3wa0 E:21-103 [262363]
    Other proteins in same PDB: d3wa0a2, d3wa0a3, d3wa0b2, d3wa0b3, d3wa0c2, d3wa0c3, d3wa0d2, d3wa0d3, d3wa0e2, d3wa0e3, d3wa0f2, d3wa0f3
    automated match to d1h4ra3
  6. Domain d3wa0f1: 3wa0 F:21-103 [262366]
    Other proteins in same PDB: d3wa0a2, d3wa0a3, d3wa0b2, d3wa0b3, d3wa0c2, d3wa0c3, d3wa0d2, d3wa0d3, d3wa0e2, d3wa0e3, d3wa0f2, d3wa0f3
    automated match to d1h4ra3
5. Domains for 4p7i:
  1. Domain d4p7ia1: 4p7i A:19-103 [259914]
    Other proteins in same PDB: d4p7ia2, d4p7ia3, d4p7ib2, d4p7ib3
    automated match to d1h4ra3
    complexed with gol
  2. Domain d4p7ib1: 4p7i B:21-103 [263442]
    Other proteins in same PDB: d4p7ia2, d4p7ia3, d4p7ib2, d4p7ib3
    automated match to d1h4ra3
    complexed with gol
6. Domains for 4zrk:
  1. Domain d4zrka1: 4zrk A:20-103 [274130]
    Other proteins in same PDB: d4zrka2, d4zrka3, d4zrkb2, d4zrkb3, d4zrkc2, d4zrkc3, d4zrkd2, d4zrkd3
    automated match to d1h4ra3
  2. Domain d4zrkb1: 4zrk B:19-103 [274120]
    Other proteins in same PDB: d4zrka2, d4zrka3, d4zrkb2, d4zrkb3, d4zrkc2, d4zrkc3, d4zrkd2, d4zrkd3
    automated match to d1h4ra3
  3. Domain d4zrkc1: 4zrk C:19-103 [274123]
    Other proteins in same PDB: d4zrka2, d4zrka3, d4zrkb2, d4zrkb3, d4zrkc2, d4zrkc3, d4zrkd2, d4zrkd3
    automated match to d1h4ra3
  4. Domain d4zrkd1: 4zrk D:19-103 [274126]
    Other proteins in same PDB: d4zrka2, d4zrka3, d4zrkb2, d4zrkb3, d4zrkc2, d4zrkc3, d4zrkd2, d4zrkd3
    automated match to d1h4ra3
Nematode (Caenorhabditis elegans) [TaxId:6239] [255480] (2 PDB entries)
1. Domain for 2m4n:
  - Domain d2m4na_: 2m4n A: [243106]
    automated match to d1wxaa1
2. Domain for 5azh:
  - Domain d5azha_: 5azh A: [280114]
    automated match to d3wanb_
    complexed with mg
Norway rat (Rattus norvegicus) [TaxId:10116] [255363] (1 PDB entry)
- Domain for 2knb:
  - Domain d2knba_: 2knb A: [242578]
    Other proteins in same PDB: d2knbb_
    automated match to d3dbhi_
Trypanosoma brucei [TaxId:999953] [229344] (2 PDB entries)
1. Domain for 2lrw:
  - Domain d2lrwa_: 2lrw A: [242984]
    automated match to d3rula_
2. Domains for 3w1y:
  1. Domain d3w1ya_: 3w1y A: [229345]
    automated match to d3vvwb_
  2. Domain d3w1yb_: 3w1y B: [233906]
    automated match to d3w1ya_
Trypanosome (Trypanosoma brucei) [TaxId:5691] [189068] (1 PDB entry)
- Domains for 3h9d:
  1. Domain d3h9da_: 3h9d A: [177331]
    automated match to d1gnua_
    complexed with ca
  2. Domain d3h9db_: 3h9d B: [177332]
    automated match to d1gnua_
    complexed with ca

More info for Protein automated matches from d.15.1.0: automated matches

Timeline for Protein automated matches from d.15.1.0: automated matches:

Protein automated matches from d.15.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from d.15.1.0: automated matches appears in SCOPe 2.04
Protein automated matches from d.15.1.0: automated matches appears in SCOPe 2.06
Protein automated matches from d.15.1.0: automated matches appears in the current release, SCOPe 2.08