Species:

1. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [186998] (3 PDB entries)

   1. Domains for 2bwe:

      1. Domain d2bwet_: 2bwe T: [129361] Other proteins in same PDB: d2bwea1, d2bweb_, d2bwec_, d2bwed_, d2bwee_, d2bwef_, d2bweg_, d2bweh_, d2bwei_, d2bwej_, d2bwek_, d2bwel_, d2bwem_, d2bwen_, d2bweo_, d2bwep_, d2bweq_, d2bwer_, d2bwes1 automated match to d2bwfa_

      2. Domain d2bweu_: 2bwe U: [129362] Other proteins in same PDB: d2bwea1, d2bweb_, d2bwec_, d2bwed_, d2bwee_, d2bwef_, d2bweg_, d2bweh_, d2bwei_, d2bwej_, d2bwek_, d2bwel_, d2bwem_, d2bwen_, d2bweo_, d2bwep_, d2bweq_, d2bwer_, d2bwes1 automated match to d2bwfa_

   2. Domains for 2bwf:

      1. Domain d2bwfa_: 2bwf A: [129363] automated match to d1bt0a_ complexed with fmt

      2. Domain d2bwfb_: 2bwf B: [129364] automated match to d1bt0a_ complexed with fmt

   3. Domain for 3m63:

      • Domain d3m63b_: 3m63 B: [232888] automated match to d3v6eb_ complexed with 1pe, k

2. Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [193300] (3 PDB entries)

   1. Domain for 3w1s:

      • Domain d3w1sc_: 3w1s C: [193301] automated match to d1wz3a1

   2. Domain for 4hcn:

      • Domain d4hcnb_: 4hcn B: [222506] automated match to d3dbhi_ complexed with fmt, peg, po4

   3. Domains for 4nnj:

      1. Domain d4nnjb_: 4nnj B: [257173] automated match to d3dbhi_ complexed with amp, gol, so4

      2. Domain d4nnjd_: 4nnj D: [259837] automated match to d3dbhi_ complexed with amp, gol, so4

3. Chicken (Gallus gallus) [TaxId:9031] [254873] (2 PDB entries)

   1. Domain for 2j0m:

      • Domain d2j0ma3: 2j0m A:31-130 [147847] Other proteins in same PDB: d2j0ma1, d2j0ma2, d2j0mb_ automated match to d2al6b3 complexed with 4st

   2. Domain for 3zdt:

      • Domain d3zdtb1: 3zdt B:35-130 [250759] Other proteins in same PDB: d3zdtb2, d3zdtb3 automated match to d2al6b3 mutant

4. Fruit fly (Drosophila melanogaster) [TaxId:7227] [255352] (1 PDB entry)

   • Domain for 2kjr:

     • Domain d2kjra_: 2kjr A: [242540] automated match to d1v6ea_

5. Human (Homo sapiens) [TaxId:9606] [187090] (41 PDB entries)

   1. Domain for 1yx5:

      • Domain d1yx5b_: 1yx5 B: [124172] automated match to d1uela_

   2. Domain for 1yx6:

      • Domain d1yx6b_: 1yx6 B: [124173] automated match to d1uela_

   3. Domain for 2bf8:

      • Domain d2bf8b_: 2bf8 B: [128412] Other proteins in same PDB: d2bf8a_ automated match to d2ckhb1

   4. Domain for 2dhz:

      • Domain d2dhza_: 2dhz A: [241569] automated match to d1wgya_

   5. Domain for 2dzi:

      • Domain d2dzia_: 2dzi A: [241671] automated match to d3dbhi_

   6. Domain for 2faz:

      • Domain d2fazb_: 2faz B: [133224] Other proteins in same PDB: d2faza1 automated match to d1c3ta_

   7. Domain for 2he7:

      • Domain d2he7a1: 2he7 A:108-190 [242028] Other proteins in same PDB: d2he7a2, d2he7a3 automated match to d1gg3a3

   8. Domain for 2hj8:

      • Domain d2hj8a_: 2hj8 A: [242038] automated match to d3phxb_

   9. Domain for 2iy0:

      • Domain d2iy0b_: 2iy0 B: [137787] Other proteins in same PDB: d2iy0a1, d2iy0c1 automated match to d2ckhb1 mutant

   10. Domains for 2iy1:

       1. Domain d2iy1b_: 2iy1 B: [137788] Other proteins in same PDB: d2iy1a_, d2iy1c_ automated match to d2ckhb1 mutant

       2. Domain d2iy1d_: 2iy1 D: [137789] Other proteins in same PDB: d2iy1a_, d2iy1c_ automated match to d2ckhb1 mutant

   11. Domain for 2jxx:

       • Domain d2jxxa_: 2jxx A: [242308] automated match to d2eked_

   12. Domain for 2kdb:

       • Domain d2kdba_: 2kdb A: [242464] automated match to d1wgda_

   13. Domain for 2klc:

       • Domain d2klca_: 2klc A: [242550] automated match to d1yqba1

   14. Domain for 2l05:

       • Domain d2l05a_: 2l05 A: [242718] automated match to d3ny5b_

   15. Domain for 2l7r:

       • Domain d2l7ra_: 2l7r A: [242799] automated match to d3v6eb_

   16. Domain for 2uyz:

       • Domain d2uyzb_: 2uyz B: [140039] Other proteins in same PDB: d2uyza1 automated match to d2ckhb1 complexed with na

   17. Domain for 2vrr:

       • Domain d2vrrb_: 2vrr B: [153523] Other proteins in same PDB: d2vrra_ automated match to d2ckhb1 complexed with fmt, na

   18. Domain for 3dbs:

       • Domain d3dbsa1: 3dbs A:143-321 [245620] Other proteins in same PDB: d3dbsa2, d3dbsa3, d3dbsa4 automated match to d1e7ua3 complexed with gd9

   19. Domains for 3ny5:

       1. Domain d3ny5a_: 3ny5 A: [182620] automated match to d1rfaa_

       2. Domain d3ny5b_: 3ny5 B: [182621] automated match to d1rfaa_

       3. Domain d3ny5c_: 3ny5 C: [182622] automated match to d1rfaa_

       4. Domain d3ny5d_: 3ny5 D: [182623] automated match to d1rfaa_

   20. Domain for 3phx:

       • Domain d3phxb_: 3phx B: [214804] automated match to d4ii2b_ complexed with acy, neh, zn

   21. Domains for 3qij:

       1. Domain d3qija1: 3qij A:209-290 [248902] Other proteins in same PDB: d3qija2, d3qija3, d3qijb2, d3qijb3 automated match to d1gg3a3 complexed with unx

       2. Domain d3qijb1: 3qij B:208-290 [248905] Other proteins in same PDB: d3qija2, d3qija3, d3qijb2, d3qijb3 automated match to d1gg3a3 complexed with unx

   22. Domains for 3r66:

       1. Domain d3r66c1: 3r66 C:4-78 [233409] Other proteins in same PDB: d3r66a_, d3r66b_, d3r66c2, d3r66d2 automated match to d1z2ma1

       2. Domain d3r66d1: 3r66 D:4-78 [233410] Other proteins in same PDB: d3r66a_, d3r66b_, d3r66c2, d3r66d2 automated match to d1z2ma1

   23. Domain for 3rd2:

       • Domain d3rd2a_: 3rd2 A: [184885] automated match to d1u4aa1

   24. Domains for 3sdl:

       1. Domain d3sdlc1: 3sdl C:4-78 [239724] Other proteins in same PDB: d3sdla_, d3sdlb_, d3sdlc2, d3sdld2 automated match to d3r66c1

       2. Domain d3sdld1: 3sdl D:4-78 [239726] Other proteins in same PDB: d3sdla_, d3sdlb_, d3sdlc2, d3sdld2 automated match to d3r66c1

   25. Domains for 3u8z:

       1. Domain d3u8za1: 3u8z A:20-103 [250151] Other proteins in same PDB: d3u8za2, d3u8zb2, d3u8zc2, d3u8zc3, d3u8zd2 automated match to d1gc7a3

       2. Domain d3u8zb1: 3u8z B:20-103 [250153] Other proteins in same PDB: d3u8za2, d3u8zb2, d3u8zc2, d3u8zc3, d3u8zd2 automated match to d1gc7a3

       3. Domain d3u8zc1: 3u8z C:20-103 [250155] Other proteins in same PDB: d3u8za2, d3u8zb2, d3u8zc2, d3u8zc3, d3u8zd2 automated match to d1gc7a3

       4. Domain d3u8zd1: 3u8z D:20-103 [250158] Other proteins in same PDB: d3u8za2, d3u8zb2, d3u8zc2, d3u8zc3, d3u8zd2 automated match to d1gc7a3

   26. Domain for 3vvw:

       • Domain d3vvwb_: 3vvw B: [193944] automated match to d2zjdc_

   27. Domain for 3wam:

       • Domain d3wama_: 3wam A: [230200] automated match to d3vtva_ complexed with cit

   28. Domain for 3zvv:

       • Domain d3zvva1: 3zvv A:144-321 [250875] Other proteins in same PDB: d3zvva2, d3zvva3, d3zvva4 automated match to d1e7ua3 complexed with xaz

   29. Domain for 3zw3:

       • Domain d3zw3a1: 3zw3 A:144-321 [250879] Other proteins in same PDB: d3zw3a2, d3zw3a3 automated match to d1e7ua3 complexed with zw3

   30. Domain for 4anu:

       • Domain d4anua1: 4anu A:143-321 [251079] Other proteins in same PDB: d4anua2, d4anua3, d4anua4 automated match to d1e7ua3 complexed with em7, so4

   31. Domain for 4anv:

       • Domain d4anva1: 4anv A:144-321 [251083] Other proteins in same PDB: d4anva2, d4anva3, d4anva4 automated match to d1e7ua3 complexed with 751, so4

   32. Domain for 4anw:

       • Domain d4anwa1: 4anw A:143-321 [251087] Other proteins in same PDB: d4anwa2, d4anwa3, d4anwa4 automated match to d1e7ua3 complexed with o92, so4

   33. Domain for 4anx:

       • Domain d4anxa1: 4anx A:143-321 [251091] Other proteins in same PDB: d4anxa2, d4anxa3, d4anxa4 automated match to d1e7ua3 complexed with 534

   34. Domains for 4gdk:

       1. Domain d4gdka_: 4gdk A: [221855] automated match to d4gdla_ complexed with na

       2. Domain d4gdkd_: 4gdk D: [221856] automated match to d4gdla_ complexed with na

   35. Domain for 4gdl:

       • Domain d4gdla_: 4gdl A: [193346] automated match to d1wz3a1 complexed with na

   36. Domain for 4hle:

       • Domain d4hlea1: 4hle A:147-320 [252463] Other proteins in same PDB: d4hlea2, d4hlea3, d4hlea4 automated match to d1e7ua3 complexed with 17v

   37. Domain for 4j6i:

       • Domain d4j6ia1: 4j6i A:143-321 [252815] Other proteins in same PDB: d4j6ia2, d4j6ia3, d4j6ia4 automated match to d1e7ua3 complexed with 1jv

   38. Domains for 4naw:

       1. Domain d4nawa_: 4naw A: [228876] automated match to d4gdla_ complexed with na, so4

       2. Domain d4nawe_: 4naw E: [228875] automated match to d4gdla_ complexed with na, so4

       3. Domain d4nawi_: 4naw I: [228878] automated match to d4gdla_ complexed with na, so4

       4. Domain d4nawm_: 4naw M: [228877] automated match to d4gdla_ complexed with na, so4

   39. Domain for 4npn:

       • Domain d4npna_: 4npn A: [260331] automated match to d2ekec_

   40. Domains for 4ny0:

       1. Domain d4ny0a1: 4ny0 A:34-130 [254031] Other proteins in same PDB: d4ny0a2, d4ny0a3, d4ny0b2, d4ny0b3, d4ny0d2, d4ny0d3 automated match to d2al6b3

       2. Domain d4ny0b1: 4ny0 B:34-130 [254034] Other proteins in same PDB: d4ny0a2, d4ny0a3, d4ny0b2, d4ny0b3, d4ny0d2, d4ny0d3 automated match to d2al6b3

       3. Domain d4ny0d1: 4ny0 D:34-130 [254037] Other proteins in same PDB: d4ny0a2, d4ny0a3, d4ny0b2, d4ny0b3, d4ny0d2, d4ny0d3 automated match to d2al6b3

   41. Domain for 4urk:

       • Domain d4urka1: 4urk A:144-321 [260597] Other proteins in same PDB: d4urka2, d4urka3, d4urka4 automated match to d1e7ua3 complexed with a82

6. Mouse (Mus musculus) [TaxId:10090] [189205] (5 PDB entries)

   1. Domains for 2d2q:

      1. Domain d2d2qa3: 2d2q A:3-87 [131184] Other proteins in same PDB: d2d2qa1, d2d2qa2, d2d2qb1, d2d2qb2 automated match to d1gc7a3

      2. Domain d2d2qb3: 2d2q B:3-87 [131187] Other proteins in same PDB: d2d2qa1, d2d2qa2, d2d2qb1, d2d2qb2 automated match to d1gc7a3

   2. Domains for 3a4r:

      1. Domain d3a4ra_: 3a4r A: [171722] automated match to d1wm2a_ complexed with edo, so4

      2. Domain d3a4rb_: 3a4r B: [171723] automated match to d1wm2a_ complexed with edo, so4

   3. Domains for 3a4s:

      1. Domain d3a4sc_: 3a4s C: [171726] Other proteins in same PDB: d3a4sa_, d3a4sb_ automated match to d1wm2a_ protein/RNA complex

      2. Domain d3a4sd_: 3a4s D: [171727] Other proteins in same PDB: d3a4sa_, d3a4sb_ automated match to d1wm2a_ protein/RNA complex

   4. Domain for 3wa0:

      • Domain d3wa0a1: 3wa0 A:24-103 [256457] Other proteins in same PDB: d3wa0a2, d3wa0a3 automated match to d1h4ra3

   5. Domain for 4p7i:

      • Domain d4p7ia1: 4p7i A:19-103 [259914] Other proteins in same PDB: d4p7ia2, d4p7ia3 automated match to d1h4ra3 complexed with gol

7. Nematode (Caenorhabditis elegans) [TaxId:6239] [255480] (1 PDB entry)

   • Domain for 2m4n:

     • Domain d2m4na_: 2m4n A: [243106] automated match to d1wxaa1

8. Norway rat (Rattus norvegicus) [TaxId:10116] [255363] (1 PDB entry)

   • Domain for 2knb:

     • Domain d2knba_: 2knb A: [242578] Other proteins in same PDB: d2knbb_ automated match to d3dbhi_

9. Trypanosoma brucei [TaxId:999953] [229344] (2 PDB entries)

   1. Domain for 2lrw:

      • Domain d2lrwa_: 2lrw A: [242984] automated match to d3rula_

   2. Domains for 3w1y:

      1. Domain d3w1ya_: 3w1y A: [229345] automated match to d3vvwb_

      2. Domain d3w1yb_: 3w1y B: [233906] automated match to d3w1ya_

10. Trypanosome (Trypanosoma brucei) [TaxId:5691] [189068] (1 PDB entry)

    • Domains for 3h9d:

      1. Domain d3h9da_: 3h9d A: [177331] automated match to d1gnua_ complexed with ca

      2. Domain d3h9db_: 3h9d B: [177332] automated match to d1gnua_ complexed with ca

More info for Protein automated matches from d.15.1.0: automated matches

Timeline for Protein automated matches from d.15.1.0: automated matches:

• Protein automated matches from d.15.1.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from d.15.1.0: automated matches appears in SCOPe 2.03
  
• Protein automated matches from d.15.1.0: automated matches appears in SCOPe 2.05
  
• Protein automated matches from d.15.1.0: automated matches appears in the current release, SCOPe 2.08