SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2158219Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2158220Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2159468Family d.15.1.0: automated matches [191343] (1 protein)
    not a true family
  6. 2159469Protein automated matches [190233] (21 species)
    not a true protein

Species:

  1. 2159470Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [186998] (7 PDB entries)
    1. Domains for 2bwe:
      1. 2159480Domain d2bwet_: 2bwe T: [129361]
        Other proteins in same PDB: d2bwea1, d2bweb_, d2bwec_, d2bwed_, d2bwee_, d2bwef_, d2bweg_, d2bweh_, d2bwei_, d2bwej_, d2bwek_, d2bwel_, d2bwem_, d2bwen_, d2bweo_, d2bwep_, d2bweq_, d2bwer_, d2bwes1
        automated match to d2bwfa_
      2. 2159481Domain d2bweu_: 2bwe U: [129362]
        Other proteins in same PDB: d2bwea1, d2bweb_, d2bwec_, d2bwed_, d2bwee_, d2bwef_, d2bweg_, d2bweh_, d2bwei_, d2bwej_, d2bwek_, d2bwel_, d2bwem_, d2bwen_, d2bweo_, d2bwep_, d2bweq_, d2bwer_, d2bwes1
        automated match to d2bwfa_
    2. Domains for 2bwf:
      1. 2159471Domain d2bwfa_: 2bwf A: [129363]
        automated match to d1bt0a_
        complexed with fmt
      2. 2159472Domain d2bwfb_: 2bwf B: [129364]
        automated match to d1bt0a_
        complexed with fmt
    3. Domain for 3m63:
    4. Domains for 3zdm:
      1. 2159473Domain d3zdmc_: 3zdm C: [265787]
        automated match to d2dzia_
      2. 2159474Domain d3zdmf_: 3zdm F: [265788]
        automated match to d2dzia_
    5. Domain for 4a20:
    6. Domain for 4asw:
    7. Domains for 4goc:
      1. 2159476Domain d4goca1: 4goc A:74-148 [307452]
        Other proteins in same PDB: d4goca2, d4gocb2, d4gocc2
        automated match to d3zdmc_
      2. 2159477Domain d4gocb1: 4goc B:74-148 [307454]
        Other proteins in same PDB: d4goca2, d4gocb2, d4gocc2
        automated match to d3zdmc_
      3. 2159478Domain d4gocc1: 4goc C:74-148 [307456]
        Other proteins in same PDB: d4goca2, d4gocb2, d4gocc2
        automated match to d3zdmc_
  2. 2159483Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [193300] (7 PDB entries)
    1. Domain for 2lxa:
    2. Domain for 2lxc:
    3. Domain for 2nbu:
    4. Domain for 2nbw:
    5. Domain for 3w1s:
    6. Domain for 4hcn:
    7. Domains for 4nnj:
      1. 2159484Domain d4nnjb1: 4nnj B:1-76 [257173]
        Other proteins in same PDB: d4nnjb2, d4nnjd2, d4nnje2
        automated match to d3dbhi_
        complexed with amp, gol, so4
      2. 2159485Domain d4nnjd1: 4nnj D:1-76 [259837]
        Other proteins in same PDB: d4nnjb2, d4nnjd2, d4nnje2
        automated match to d3dbhi_
        complexed with amp, gol, so4
      3. 2159486Domain d4nnje1: 4nnj E:1-76 [263171]
        Other proteins in same PDB: d4nnjb2, d4nnjd2, d4nnje2
        automated match to d3dbhi_
        complexed with amp, gol, so4
  3. 2159491Betacoronavirus england 1 [TaxId:1263720] [311419] (1 PDB entry)
  4. 2159494Candidatus caldiarchaeum [TaxId:311458] [274223] (1 PDB entry)
  5. 2159496Chicken (Gallus gallus) [TaxId:9031] [254873] (2 PDB entries)
    1. Domain for 2j0m:
    2. Domain for 3zdt:
  6. 2159499Fruit fly (Drosophila melanogaster) [TaxId:7227] [255352] (1 PDB entry)
  7. 2159501Human (Homo sapiens) [TaxId:9606] [187090] (74 PDB entries)
    1. Domain for 1yx5:
    2. Domain for 1yx6:
    3. Domain for 2bf8:
    4. Domain for 2dhz:
    5. Domain for 2dzi:
    6. Domain for 2faz:
    7. Domain for 2he7:
    8. Domain for 2hj8:
    9. Domain for 2iy0:
    10. Domains for 2iy1:
      1. 2159545Domain d2iy1b_: 2iy1 B: [137788]
        Other proteins in same PDB: d2iy1a_, d2iy1c_
        automated match to d2ckhb1
        mutant
      2. 2159546Domain d2iy1d_: 2iy1 D: [137789]
        Other proteins in same PDB: d2iy1a_, d2iy1c_
        automated match to d2ckhb1
        mutant
    11. Domain for 2jxx:
    12. Domain for 2kdb:
    13. Domain for 2klc:
    14. Domain for 2l05:
    15. Domain for 2l7r:
    16. Domain for 2ld9:
    17. Domain for 2mbe:
    18. Domain for 2n9p:
    19. Domain for 2ncn:
    20. Domain for 2uyz:
    21. Domain for 2vrr:
    22. Domain for 3dbs:
    23. Domains for 3ny5:
      1. 2159512Domain d3ny5a1: 3ny5 A:153-233 [182620]
        Other proteins in same PDB: d3ny5a2, d3ny5b2, d3ny5c2, d3ny5d2
        automated match to d1rfaa_
      2. 2159513Domain d3ny5b1: 3ny5 B:153-235 [182621]
        Other proteins in same PDB: d3ny5a2, d3ny5b2, d3ny5c2, d3ny5d2
        automated match to d1rfaa_
      3. 2159514Domain d3ny5c1: 3ny5 C:153-235 [182622]
        Other proteins in same PDB: d3ny5a2, d3ny5b2, d3ny5c2, d3ny5d2
        automated match to d1rfaa_
      4. 2159515Domain d3ny5d1: 3ny5 D:153-232 [182623]
        Other proteins in same PDB: d3ny5a2, d3ny5b2, d3ny5c2, d3ny5d2
        automated match to d1rfaa_
    24. Domain for 3phx:
    25. Domain for 3pz7:
    26. Domain for 3q3j:
    27. Domains for 3qij:
      1. 2159507Domain d3qija1: 3qij A:211-290 [248902]
        Other proteins in same PDB: d3qija2, d3qija3, d3qija4, d3qijb2, d3qijb3, d3qijb4
        automated match to d1gg3a3
        complexed with unx
      2. 2159508Domain d3qijb1: 3qij B:211-290 [248905]
        Other proteins in same PDB: d3qija2, d3qija3, d3qija4, d3qijb2, d3qijb3, d3qijb4
        automated match to d1gg3a3
        complexed with unx
    28. Domains for 3r66:
      1. 2159542Domain d3r66c1: 3r66 C:4-78 [233409]
        Other proteins in same PDB: d3r66a_, d3r66b_, d3r66c2, d3r66d2
        automated match to d1z2ma1
      2. 2159543Domain d3r66d1: 3r66 D:4-78 [233410]
        Other proteins in same PDB: d3r66a_, d3r66b_, d3r66c2, d3r66d2
        automated match to d1z2ma1
    29. Domain for 3rd2:
    30. Domains for 3sdl:
      1. 2159520Domain d3sdlc1: 3sdl C:4-78 [239724]
        Other proteins in same PDB: d3sdla_, d3sdlb_, d3sdlc2, d3sdld2
        automated match to d3r66c1
      2. 2159521Domain d3sdld1: 3sdl D:4-78 [239726]
        Other proteins in same PDB: d3sdla_, d3sdlb_, d3sdlc2, d3sdld2
        automated match to d3r66c1
    31. Domains for 3u8z:
      1. 2159533Domain d3u8za1: 3u8z A:20-103 [250151]
        Other proteins in same PDB: d3u8za2, d3u8zb2, d3u8zc2, d3u8zc3, d3u8zd2
        automated match to d1gc7a3
      2. 2159534Domain d3u8zb1: 3u8z B:20-103 [250153]
        Other proteins in same PDB: d3u8za2, d3u8zb2, d3u8zc2, d3u8zc3, d3u8zd2
        automated match to d1gc7a3
      3. 2159535Domain d3u8zc1: 3u8z C:20-103 [250155]
        Other proteins in same PDB: d3u8za2, d3u8zb2, d3u8zc2, d3u8zc3, d3u8zd2
        automated match to d1gc7a3
      4. 2159536Domain d3u8zd1: 3u8z D:20-103 [250158]
        Other proteins in same PDB: d3u8za2, d3u8zb2, d3u8zc2, d3u8zc3, d3u8zd2
        automated match to d1gc7a3
    32. Domain for 3vvw:
    33. Domain for 3wam:
    34. Domain for 3zvv:
    35. Domain for 3zw3:
    36. Domain for 4anu:
    37. Domain for 4anv:
    38. Domain for 4anw:
    39. Domain for 4anx:
    40. Domain for 4e71:
    41. Domain for 4e74:
    42. Domains for 4gdk:
      1. 2159529Domain d4gdka_: 4gdk A: [221855]
        automated match to d4gdla_
        complexed with na
      2. 2159530Domain d4gdkd_: 4gdk D: [221856]
        automated match to d4gdla_
        complexed with na
    43. Domain for 4gdl:
    44. Domain for 4hle:
    45. Domain for 4j6i:
    46. Domains for 4naw:
      1. 2159522Domain d4nawa_: 4naw A: [228876]
        automated match to d4gdla_
        complexed with na, so4
      2. 2159523Domain d4nawe_: 4naw E: [228875]
        automated match to d4gdla_
        complexed with na, so4
      3. 2159524Domain d4nawi_: 4naw I: [228878]
        automated match to d4gdla_
        complexed with na, so4
      4. 2159525Domain d4nawm_: 4naw M: [228877]
        automated match to d4gdla_
        complexed with na, so4
    47. Domain for 4npn:
    48. Domains for 4ny0:
      1. 2159553Domain d4ny0a1: 4ny0 A:34-130 [254031]
        Other proteins in same PDB: d4ny0a2, d4ny0a3, d4ny0b2, d4ny0b3, d4ny0d2, d4ny0d3
        automated match to d2al6b3
      2. 2159554Domain d4ny0b1: 4ny0 B:34-130 [254034]
        Other proteins in same PDB: d4ny0a2, d4ny0a3, d4ny0b2, d4ny0b3, d4ny0d2, d4ny0d3
        automated match to d2al6b3
      3. 2159555Domain d4ny0d1: 4ny0 D:34-130 [254037]
        Other proteins in same PDB: d4ny0a2, d4ny0a3, d4ny0b2, d4ny0b3, d4ny0d2, d4ny0d3
        automated match to d2al6b3
    49. Domains for 4rma:
      1. 2159518Domain d4rmaa1: 4rma A:2-87 [309470]
        Other proteins in same PDB: d4rmaa2, d4rmaa3, d4rmab2, d4rmab3
        automated match to d1gc7a3
        complexed with so4
      2. 2159519Domain d4rmab1: 4rma B:2-87 [309473]
        Other proteins in same PDB: d4rmaa2, d4rmaa3, d4rmab2, d4rmab3
        automated match to d1gc7a3
        complexed with so4
    50. Domain for 4urk:
    51. Domains for 4wip:
      1. 2159557Domain d4wipa_: 4wip A: [272733]
        automated match to d1wspb_
        complexed with 1pe
      2. 2159558Domain d4wipb_: 4wip B: [272738]
        automated match to d1wspb_
        complexed with 1pe
      3. 2159559Domain d4wipc_: 4wip C: [272739]
        automated match to d1wspb_
        complexed with 1pe
    52. Domains for 4xkl:
      1. 2159540Domain d4xkla1: 4xkl A:1-76 [279369]
        Other proteins in same PDB: d4xkla2, d4xklc2
        automated match to d4nnjb_
        complexed with act, gol, zn
      2. 2159541Domain d4xklc1: 4xkl C:1-76 [279370]
        Other proteins in same PDB: d4xkla2, d4xklc2
        automated match to d4nnjb_
        complexed with act, gol, zn
    53. Domains for 4zri:
      1. 2159560Domain d4zria1: 4zri A:20-103 [274140]
        Other proteins in same PDB: d4zria2, d4zria3, d4zrib2, d4zrib3
        automated match to d1h4ra3
      2. 2159561Domain d4zrib1: 4zri B:21-103 [274137]
        Other proteins in same PDB: d4zria2, d4zria3, d4zrib2, d4zrib3
        automated match to d1h4ra3
    54. Domain for 4zrj:
    55. Domains for 5aek:
      1. 2269754Domain d5aekf_: 5aek F: [313059]
        Other proteins in same PDB: d5aeka_, d5aekc_, d5aeke_, d5aekg_, d5aeki_, d5aekk_, d5aekm_, d5aeko_, d5aekq_, d5aeks_, d5aeku_, d5aekw_
        automated match to d2vrrb_
      2. 2269777Domain d5aekr_: 5aek R: [313082]
        Other proteins in same PDB: d5aeka_, d5aekc_, d5aeke_, d5aekg_, d5aeki_, d5aekk_, d5aekm_, d5aeko_, d5aekq_, d5aeks_, d5aeku_, d5aekw_
        automated match to d2vrrb_
      3. 2269789Domain d5aekh_: 5aek H: [313094]
        Other proteins in same PDB: d5aeka_, d5aekc_, d5aeke_, d5aekg_, d5aeki_, d5aekk_, d5aekm_, d5aeko_, d5aekq_, d5aeks_, d5aeku_, d5aekw_
        automated match to d2vrrb_
      4. 2269817Domain d5aekp_: 5aek P: [313122]
        Other proteins in same PDB: d5aeka_, d5aekc_, d5aeke_, d5aekg_, d5aeki_, d5aekk_, d5aekm_, d5aeko_, d5aekq_, d5aeks_, d5aeku_, d5aekw_
        automated match to d2vrrb_
      5. 2270102Domain d5aekj_: 5aek J: [313407]
        Other proteins in same PDB: d5aeka_, d5aekc_, d5aeke_, d5aekg_, d5aeki_, d5aekk_, d5aekm_, d5aeko_, d5aekq_, d5aeks_, d5aeku_, d5aekw_
        automated match to d2vrrb_
      6. 2270105Domain d5aekt_: 5aek T: [313410]
        Other proteins in same PDB: d5aeka_, d5aekc_, d5aeke_, d5aekg_, d5aeki_, d5aekk_, d5aekm_, d5aeko_, d5aekq_, d5aeks_, d5aeku_, d5aekw_
        automated match to d2vrrb_
      7. 2270115Domain d5aekl_: 5aek L: [313420]
        Other proteins in same PDB: d5aeka_, d5aekc_, d5aeke_, d5aekg_, d5aeki_, d5aekk_, d5aekm_, d5aeko_, d5aekq_, d5aeks_, d5aeku_, d5aekw_
        automated match to d2vrrb_
      8. 2270121Domain d5aekb_: 5aek B: [313426]
        Other proteins in same PDB: d5aeka_, d5aekc_, d5aeke_, d5aekg_, d5aeki_, d5aekk_, d5aekm_, d5aeko_, d5aekq_, d5aeks_, d5aeku_, d5aekw_
        automated match to d2vrrb_
      9. 2270122Domain d5aekv_: 5aek V: [313427]
        Other proteins in same PDB: d5aeka_, d5aekc_, d5aeke_, d5aekg_, d5aeki_, d5aekk_, d5aekm_, d5aeko_, d5aekq_, d5aeks_, d5aeku_, d5aekw_
        automated match to d2vrrb_
      10. 2270128Domain d5aekx_: 5aek X: [313433]
        Other proteins in same PDB: d5aeka_, d5aekc_, d5aeke_, d5aekg_, d5aeki_, d5aekk_, d5aekm_, d5aeko_, d5aekq_, d5aeks_, d5aeku_, d5aekw_
        automated match to d2vrrb_
      11. 2270130Domain d5aekn_: 5aek N: [313435]
        Other proteins in same PDB: d5aeka_, d5aekc_, d5aeke_, d5aekg_, d5aeki_, d5aekk_, d5aekm_, d5aeko_, d5aekq_, d5aeks_, d5aeku_, d5aekw_
        automated match to d2vrrb_
      12. 2270272Domain d5aekd_: 5aek D: [313577]
        Other proteins in same PDB: d5aeka_, d5aekc_, d5aeke_, d5aekg_, d5aeki_, d5aekk_, d5aekm_, d5aeko_, d5aekq_, d5aeks_, d5aeku_, d5aekw_
        automated match to d2vrrb_
    56. Domains for 5b83:
      1. 2278844Domain d5b83a1: 5b83 A:1-76 [322145]
        automated match to d2k39a_
      2. 2278847Domain d5b83a2: 5b83 A:77-152 [322148]
        automated match to d2k39a_
      3. 2278848Domain d5b83a3: 5b83 A:153-228 [322149]
        automated match to d2k39a_
      4. 2278849Domain d5b83a4: 5b83 A:229-302 [322150]
        automated match to d2k39a_
      5. 2278854Domain d5b83d1: 5b83 D:1-76 [322155]
        automated match to d2k39a_
      6. 2278855Domain d5b83d2: 5b83 D:77-152 [322156]
        automated match to d2k39a_
      7. 2278856Domain d5b83d3: 5b83 D:153-228 [322157]
        automated match to d2k39a_
      8. 2278858Domain d5b83d4: 5b83 D:229-300 [322159]
        automated match to d2k39a_
    57. Domains for 5dps:
      1. 2279961Domain d5dpsb_: 5dps B: [323262]
        automated match to d3wanb_
      2. 2279986Domain d5dpsa_: 5dps A: [323287]
        automated match to d3wanb_
      3. 2280007Domain d5dpsc_: 5dps C: [323308]
        automated match to d3wanb_
    58. Domains for 5dpt:
      1. 2279935Domain d5dptb_: 5dpt B: [323236]
        automated match to d3wanb_
        complexed with mpd
      2. 2280183Domain d5dpta_: 5dpt A: [323484]
        automated match to d3wanb_
        complexed with mpd
    59. Domain for 5g2n:
    60. Domain for 5g55:
    61. Domains for 5h07:
      1. 2287341Domain d5h07a1: 5h07 A:1-76 [330642]
        automated match to d2k39a_
      2. 2287342Domain d5h07a2: 5h07 A:101-176 [330643]
        automated match to d2k39a_
      3. 2287343Domain d5h07a3: 5h07 A:201-271 [330644]
        automated match to d2k39a_
    62. Domain for 5hps:
    63. Domains for 5hpt:
      1. 2271469Domain d5hpte_: 5hpt E: [314770]
        Other proteins in same PDB: d5hptc_, d5hptf_
        automated match to d3b1lx_
      2. 2271516Domain d5hptb_: 5hpt B: [314817]
        Other proteins in same PDB: d5hptc_, d5hptf_
        automated match to d3b1lx_
      3. 2271545Domain d5hpth_: 5hpt H: [314846]
        Other proteins in same PDB: d5hptc_, d5hptf_
        automated match to d3b1lx_
    64. Domain for 5j17:
    65. Domain for 5j18:
    66. Domain for 5j2r:
    67. Domains for 5jg6:
      1. 2275239Domain d5jg6b1: 5jg6 B:0-75 [318540]
        Other proteins in same PDB: d5jg6b2
        automated match to d5hpte_
        complexed with zn
      2. 2275316Domain d5jg6c_: 5jg6 C: [318617]
        Other proteins in same PDB: d5jg6b2
        automated match to d5hpte_
        complexed with zn
    68. Domains for 5jze:
      1. 2280922Domain d5jzed_: 5jze D: [324223]
        automated match to d3phxb_
        complexed with aye, flc
      2. 2280923Domain d5jzeb_: 5jze B: [324224]
        automated match to d3phxb_
        complexed with aye, flc
    69. Domains for 5m93:
      1. 2283919Domain d5m93a_: 5m93 A: [327220]
        Other proteins in same PDB: d5m93b2, d5m93c2
        automated match to d1mg8a_
        complexed with rib, so4
      2. 2283921Domain d5m93b1: 5m93 B:0-73 [327222]
        Other proteins in same PDB: d5m93b2, d5m93c2
        automated match to d1mg8a_
        complexed with rib, so4
      3. 2283983Domain d5m93c1: 5m93 C:0-74 [327284]
        Other proteins in same PDB: d5m93b2, d5m93c2
        automated match to d1mg8a_
        complexed with rib, so4
    70. Domains for 5tl6:
      1. 2290529Domain d5tl6a_: 5tl6 A: [333830]
        Other proteins in same PDB: d5tl6b2, d5tl6d2
        automated match to d3phxb_
        complexed with so4, zn
      2. 2290544Domain d5tl6c_: 5tl6 C: [333845]
        Other proteins in same PDB: d5tl6b2, d5tl6d2
        automated match to d3phxb_
        complexed with so4, zn
    71. Domains for 5tl7:
      1. 2290551Domain d5tl7a_: 5tl7 A: [333852]
        Other proteins in same PDB: d5tl7b2, d5tl7b3, d5tl7d2
        automated match to d3phxb_
        complexed with zn
      2. 2290561Domain d5tl7c_: 5tl7 C: [333862]
        Other proteins in same PDB: d5tl7b2, d5tl7b3, d5tl7d2
        automated match to d3phxb_
        complexed with zn
    72. Domain for 5v6a:
    73. Domains for 5x3p:
      1. 2288903Domain d5x3pb_: 5x3p B: [332204]
        automated match to d3r3mb_
      2. 2288907Domain d5x3pa_: 5x3p A: [332208]
        automated match to d3r3mb_
      3. 2288929Domain d5x3pc_: 5x3p C: [332230]
        automated match to d3r3mb_
    74. Domains for 5x4l:
      1. 2288925Domain d5x4lc_: 5x4l C: [332226]
        Other proteins in same PDB: d5x4la1, d5x4la2, d5x4la3, d5x4lb1, d5x4lb2
        automated match to d3r3mb_
      2. 2288947Domain d5x4ld_: 5x4l D: [332248]
        Other proteins in same PDB: d5x4la1, d5x4la2, d5x4la3, d5x4lb1, d5x4lb2
        automated match to d3r3mb_
  8. 2159575Human betacoronavirus 2c EMC/2012 [TaxId:1235996] [311415] (4 PDB entries)
    1. Domain for 4pt5:
    2. Domain for 4rna:
    3. Domain for 5v69:
    4. Domain for 5v6a:
  9. 2159578Human betacoronavirus 2c jordan-n3/2012 [TaxId:1306931] [311426] (3 PDB entries)
    1. Domain for 4rez:
    2. Domain for 4rf0:
    3. Domain for 4rf1:
  10. 2159582Human coronavirus emc [TaxId:1263720] [311463] (1 PDB entry)
  11. 2159584Mouse (Mus musculus) [TaxId:10090] [189205] (10 PDB entries)
    1. Domains for 2d2q:
      1. 2159599Domain d2d2qa3: 2d2q A:3-87 [131184]
        Other proteins in same PDB: d2d2qa1, d2d2qa2, d2d2qb1, d2d2qb2
        automated match to d1gc7a3
      2. 2159600Domain d2d2qb3: 2d2q B:3-87 [131187]
        Other proteins in same PDB: d2d2qa1, d2d2qa2, d2d2qb1, d2d2qb2
        automated match to d1gc7a3
    2. Domains for 3a4r:
      1. 2159585Domain d3a4ra1: 3a4r A:339-412 [171722]
        Other proteins in same PDB: d3a4ra2, d3a4rb2
        automated match to d1wm2a_
        complexed with edo, so4
      2. 2159586Domain d3a4rb1: 3a4r B:341-412 [171723]
        Other proteins in same PDB: d3a4ra2, d3a4rb2
        automated match to d1wm2a_
        complexed with edo, so4
    3. Domains for 3a4s:
      1. 2159593Domain d3a4sc_: 3a4s C: [171726]
        Other proteins in same PDB: d3a4sa_, d3a4sb1, d3a4sb2
        automated match to d1wm2a_
        protein/RNA complex
      2. 2159594Domain d3a4sd_: 3a4s D: [171727]
        Other proteins in same PDB: d3a4sa_, d3a4sb1, d3a4sb2
        automated match to d1wm2a_
        protein/RNA complex
    4. Domains for 3pz8:
      1. 2159603Domain d3pz8a_: 3pz8 A: [306268]
        Other proteins in same PDB: d3pz8b2, d3pz8d2, d3pz8e2, d3pz8f2
        automated match to d4wipc_
        mutant
      2. 2159604Domain d3pz8b1: 3pz8 B:3-85 [306269]
        Other proteins in same PDB: d3pz8b2, d3pz8d2, d3pz8e2, d3pz8f2
        automated match to d4wipc_
        mutant
      3. 2159605Domain d3pz8c_: 3pz8 C: [306271]
        Other proteins in same PDB: d3pz8b2, d3pz8d2, d3pz8e2, d3pz8f2
        automated match to d4wipc_
        mutant
      4. 2159606Domain d3pz8d1: 3pz8 D:3-84 [306272]
        Other proteins in same PDB: d3pz8b2, d3pz8d2, d3pz8e2, d3pz8f2
        automated match to d4wipc_
        mutant
      5. 2159607Domain d3pz8e1: 3pz8 E:3-84 [306274]
        Other proteins in same PDB: d3pz8b2, d3pz8d2, d3pz8e2, d3pz8f2
        automated match to d4wipc_
        mutant
      6. 2159608Domain d3pz8f1: 3pz8 F:3-84 [306276]
        Other proteins in same PDB: d3pz8b2, d3pz8d2, d3pz8e2, d3pz8f2
        automated match to d4wipc_
        mutant
      7. 2159609Domain d3pz8g_: 3pz8 G: [306278]
        Other proteins in same PDB: d3pz8b2, d3pz8d2, d3pz8e2, d3pz8f2
        automated match to d4wipc_
        mutant
      8. 2159610Domain d3pz8h_: 3pz8 H: [306279]
        Other proteins in same PDB: d3pz8b2, d3pz8d2, d3pz8e2, d3pz8f2
        automated match to d4wipc_
        mutant
    5. Domains for 3wa0:
      1. 2159587Domain d3wa0a1: 3wa0 A:24-103 [256457]
        Other proteins in same PDB: d3wa0a2, d3wa0a3, d3wa0b2, d3wa0b3, d3wa0c2, d3wa0c3, d3wa0d2, d3wa0d3, d3wa0e2, d3wa0e3, d3wa0f2, d3wa0f3
        automated match to d1h4ra3
      2. 2159588Domain d3wa0b1: 3wa0 B:23-103 [262354]
        Other proteins in same PDB: d3wa0a2, d3wa0a3, d3wa0b2, d3wa0b3, d3wa0c2, d3wa0c3, d3wa0d2, d3wa0d3, d3wa0e2, d3wa0e3, d3wa0f2, d3wa0f3
        automated match to d1h4ra3
      3. 2159589Domain d3wa0c1: 3wa0 C:21-103 [262357]
        Other proteins in same PDB: d3wa0a2, d3wa0a3, d3wa0b2, d3wa0b3, d3wa0c2, d3wa0c3, d3wa0d2, d3wa0d3, d3wa0e2, d3wa0e3, d3wa0f2, d3wa0f3
        automated match to d1h4ra3
      4. 2159590Domain d3wa0d1: 3wa0 D:19-103 [262360]
        Other proteins in same PDB: d3wa0a2, d3wa0a3, d3wa0b2, d3wa0b3, d3wa0c2, d3wa0c3, d3wa0d2, d3wa0d3, d3wa0e2, d3wa0e3, d3wa0f2, d3wa0f3
        automated match to d1h4ra3
      5. 2159591Domain d3wa0e1: 3wa0 E:21-103 [262363]
        Other proteins in same PDB: d3wa0a2, d3wa0a3, d3wa0b2, d3wa0b3, d3wa0c2, d3wa0c3, d3wa0d2, d3wa0d3, d3wa0e2, d3wa0e3, d3wa0f2, d3wa0f3
        automated match to d1h4ra3
      6. 2159592Domain d3wa0f1: 3wa0 F:21-103 [262366]
        Other proteins in same PDB: d3wa0a2, d3wa0a3, d3wa0b2, d3wa0b3, d3wa0c2, d3wa0c3, d3wa0d2, d3wa0d3, d3wa0e2, d3wa0e3, d3wa0f2, d3wa0f3
        automated match to d1h4ra3
    6. Domains for 4p7i:
      1. 2159601Domain d4p7ia1: 4p7i A:19-103 [259914]
        Other proteins in same PDB: d4p7ia2, d4p7ia3, d4p7ib2, d4p7ib3
        automated match to d1h4ra3
        complexed with gol
      2. 2159602Domain d4p7ib1: 4p7i B:21-103 [263442]
        Other proteins in same PDB: d4p7ia2, d4p7ia3, d4p7ib2, d4p7ib3
        automated match to d1h4ra3
        complexed with gol
    7. Domains for 4zrk:
      1. 2159595Domain d4zrka1: 4zrk A:20-103 [274130]
        Other proteins in same PDB: d4zrka2, d4zrka3, d4zrkb2, d4zrkb3, d4zrkc2, d4zrkc3, d4zrkd2, d4zrkd3
        automated match to d1h4ra3
      2. 2159596Domain d4zrkb1: 4zrk B:19-103 [274120]
        Other proteins in same PDB: d4zrka2, d4zrka3, d4zrkb2, d4zrkb3, d4zrkc2, d4zrkc3, d4zrkd2, d4zrkd3
        automated match to d1h4ra3
      3. 2159597Domain d4zrkc1: 4zrk C:19-103 [274123]
        Other proteins in same PDB: d4zrka2, d4zrka3, d4zrkb2, d4zrkb3, d4zrkc2, d4zrkc3, d4zrkd2, d4zrkd3
        automated match to d1h4ra3
      4. 2159598Domain d4zrkd1: 4zrk D:19-103 [274126]
        Other proteins in same PDB: d4zrka2, d4zrka3, d4zrkb2, d4zrkb3, d4zrkc2, d4zrkc3, d4zrkd2, d4zrkd3
        automated match to d1h4ra3
    8. Domains for 5chf:
      1. 2279903Domain d5chfb1: 5chf B:2-76 [323204]
        automated match to d3pseb1
        complexed with gol, so4
      2. 2279904Domain d5chfe1: 5chf E:2-76 [323205]
        automated match to d3pseb1
        complexed with gol, so4
      3. 2279905Domain d5chfb2: 5chf B:77-151 [323206]
        automated match to d3pseb2
        complexed with gol, so4
      4. 2279906Domain d5chfe2: 5chf E:77-151 [323208]
        automated match to d3pseb2
        complexed with gol, so4
      5. 2279931Domain d5chfd1: 5chf D:3-76 [323232]
        automated match to d3pseb1
        complexed with gol, so4
      6. 2279932Domain d5chfd2: 5chf D:77-151 [323233]
        automated match to d3pseb2
        complexed with gol, so4
      7. 2279988Domain d5chfc1: 5chf C:2-76 [323289]
        automated match to d3pseb1
        complexed with gol, so4
      8. 2279989Domain d5chfc2: 5chf C:77-150 [323290]
        automated match to d3pseb2
        complexed with gol, so4
      9. 2280014Domain d5chfa1: 5chf A:2-76 [323315]
        automated match to d3pseb1
        complexed with gol, so4
      10. 2280015Domain d5chfa2: 5chf A:77-150 [323316]
        automated match to d3pseb2
        complexed with gol, so4
    9. Domains for 5chv:
      1. 2279969Domain d5chvc1: 5chv C:2-76 [323270]
        Other proteins in same PDB: d5chva_, d5chvb_
        automated match to d3pseb1
        complexed with cl, so4, zn
      2. 2279970Domain d5chvc2: 5chv C:77-155 [323271]
        Other proteins in same PDB: d5chva_, d5chvb_
        automated match to d3pseb2
        complexed with cl, so4, zn
      3. 2280030Domain d5chvd1: 5chv D:2-76 [323331]
        Other proteins in same PDB: d5chva_, d5chvb_
        automated match to d3pseb1
        complexed with cl, so4, zn
      4. 2280031Domain d5chvd2: 5chv D:77-155 [323332]
        Other proteins in same PDB: d5chva_, d5chvb_
        automated match to d3pseb2
        complexed with cl, so4, zn
    10. Domains for 5chw:
      1. 2279893Domain d5chwf1: 5chw F:2-76 [323194]
        automated match to d3pseb1
        complexed with gol, so4
      2. 2279897Domain d5chwe1: 5chw E:2-76 [323199]
        automated match to d3pseb1
        complexed with gol, so4
      3. 2279898Domain d5chwb1: 5chw B:2-76 [323200]
        automated match to d3pseb1
        complexed with gol, so4
      4. 2279899Domain d5chwf2: 5chw F:77-152 [323197]
        automated match to d3pseb2
        complexed with gol, so4
      5. 2279900Domain d5chwb2: 5chw B:77-152 [323201]
        automated match to d3pseb2
        complexed with gol, so4
      6. 2279901Domain d5chwe2: 5chw E:77-155 [323202]
        automated match to d3pseb2
        complexed with gol, so4
      7. 2279902Domain d5chwg1: 5chw G:2-76 [323203]
        automated match to d3pseb1
        complexed with gol, so4
      8. 2279907Domain d5chwg2: 5chw G:77-155 [323207]
        automated match to d3pseb2
        complexed with gol, so4
      9. 2279940Domain d5chwi1: 5chw I:2-76 [323241]
        automated match to d3pseb1
        complexed with gol, so4
      10. 2279941Domain d5chwi2: 5chw I:77-150 [323242]
        automated match to d3pseb2
        complexed with gol, so4
      11. 2279959Domain d5chwa1: 5chw A:2-76 [323260]
        automated match to d3pseb1
        complexed with gol, so4
      12. 2279960Domain d5chwa2: 5chw A:77-155 [323261]
        automated match to d3pseb2
        complexed with gol, so4
      13. 2279978Domain d5chwh1: 5chw H:2-76 [323279]
        automated match to d3pseb1
        complexed with gol, so4
      14. 2279979Domain d5chwh2: 5chw H:77-151 [323280]
        automated match to d3pseb2
        complexed with gol, so4
      15. 2279980Domain d5chwc1: 5chw C:2-76 [323281]
        automated match to d3pseb1
        complexed with gol, so4
      16. 2279981Domain d5chwc2: 5chw C:77-151 [323282]
        automated match to d3pseb2
        complexed with gol, so4
      17. 2280032Domain d5chwd1: 5chw D:2-76 [323333]
        automated match to d3pseb1
        complexed with gol, so4
      18. 2280033Domain d5chwd2: 5chw D:77-155 [323334]
        automated match to d3pseb2
        complexed with gol, so4
      19. 2280083Domain d5chwj1: 5chw J:2-76 [323384]
        automated match to d3pseb1
        complexed with gol, so4
      20. 2280084Domain d5chwj2: 5chw J:77-150 [323385]
        automated match to d3pseb2
        complexed with gol, so4
  12. 2159611Nematode (Caenorhabditis elegans) [TaxId:6239] [255480] (3 PDB entries)
    1. Domain for 2m4n:
    2. Domain for 5azh:
    3. Domains for 5e6n:
      1. 2159612Domain d5e6na1: 5e6n A:17-126 [310441]
        Other proteins in same PDB: d5e6na2, d5e6nb2
        automated match to d4zdva_
      2. 2159613Domain d5e6nb1: 5e6n B:17-127 [310443]
        Other proteins in same PDB: d5e6na2, d5e6nb2
        automated match to d4zdva_
  13. 2159616Norway rat (Rattus norvegicus) [TaxId:10116] [255363] (1 PDB entry)
  14. 2159618SARS coronavirus [TaxId:227859] [311281] (4 PDB entries)
    1. Domain for 3e9s:
    2. Domain for 4m0w:
    3. Domain for 4mm3:
    4. Domains for 5tl7:
      1. 2290579Domain d5tl7b1: 5tl7 B:2-62 [333880]
        Other proteins in same PDB: d5tl7b2, d5tl7b3, d5tl7d2
        automated match to d3e9sa1
        complexed with zn
      2. 2290590Domain d5tl7d1: 5tl7 D:4-62 [333891]
        Other proteins in same PDB: d5tl7b2, d5tl7b3, d5tl7d2
        automated match to d3e9sa1
        complexed with zn
  15. 2159622Sars coronavirus [TaxId:228330] [311411] (2 PDB entries)
    1. Domain for 4ovz:
    2. Domain for 4ow0:
  16. 2159625Trypanosoma brucei [TaxId:999953] [229344] (2 PDB entries)
    1. Domain for 2lrw:
    2. Domains for 3w1y:
      1. 2159626Domain d3w1ya_: 3w1y A: [229345]
        automated match to d3vvwb_
      2. 2159627Domain d3w1yb_: 3w1y B: [233906]
        automated match to d3w1ya_
  17. 2159629Trypanosome (Trypanosoma brucei) [TaxId:5691] [189068] (1 PDB entry)
  18. 2268251Arabidopsis thaliana [TaxId:3702] [311557] (1 PDB entry)
  19. 2276854Solanum lycopersicum [TaxId:4081] [320155] (1 PDB entry)
  20. 2290534Human sars coronavirus [TaxId:227859] [333835] (1 PDB entry)
  21. 2293695Trypanosoma brucei [TaxId:185431] [336996] (1 PDB entry)

More info for Protein automated matches from d.15.1.0: automated matches

Timeline for Protein automated matches from d.15.1.0: automated matches: