Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2130990Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2130991Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2131439Family c.67.1.3: Cystathionine synthase-like [53402] (17 protein domains)
  6. 2131631Protein automated matches [190399] (9 species)
    not a true protein

Species:

  1. 2131632Citrobacter freundii [TaxId:1288347] [260926] (1 PDB entry)
  2. 2131634Citrobacter freundii [TaxId:546] [261234] (5 PDB entries)
    1. Domain for 4oma:
    2. Domain for 5d5s:
    3. Domain for 5e4z:
    4. Domain for 5k30:
    5. Domain for 5m3z:
  3. 2131636Escherichia coli [TaxId:155864] [255940] (3 PDB entries)
    1. Domains for 3lvj:
      1. 2131640Domain d3lvja_: 3lvj A: [239434]
        Other proteins in same PDB: d3lvjc_, d3lvjd_
        automated match to d1p3wa_
        protein/RNA complex; complexed with plp
      2. 2131641Domain d3lvjb_: 3lvj B: [239435]
        Other proteins in same PDB: d3lvjc_, d3lvjd_
        automated match to d1p3wa_
        protein/RNA complex; complexed with plp
    2. Domain for 3lvk:
    3. Domains for 3lvm:
      1. 2131637Domain d3lvma_: 3lvm A: [247521]
        Other proteins in same PDB: d3lvmb2
        automated match to d1p3wa_
        complexed with plp
      2. 2131638Domain d3lvmb1: 3lvm B:1-393 [247522]
        Other proteins in same PDB: d3lvmb2
        automated match to d1p3wa_
        complexed with plp
  4. 2131642Escherichia coli [TaxId:562] [255941] (1 PDB entry)
  5. 2131644Human (Homo sapiens) [TaxId:9606] [189951] (14 PDB entries)
    1. Domains for 2yob:
      1. 2131645Domain d2yoba_: 2yob A: [231661]
        automated match to d2yobb_
        complexed with btb, gol, plp, so4
      2. 2131646Domain d2yobb_: 2yob B: [228745]
        automated match to d3kgwb_
        complexed with btb, gol, plp, so4
    2. Domains for 3imz:
      1. 2131649Domain d3imza_: 3imz A: [305572]
        Other proteins in same PDB: d3imzb_, d3imzd_
        automated match to d3kgwb_
        complexed with btb, plp
      2. 2131650Domain d3imzc_: 3imz C: [305574]
        Other proteins in same PDB: d3imzb_, d3imzd_
        automated match to d3kgwb_
        complexed with btb, plp
    3. Domains for 3r9a:
      1. 2131647Domain d3r9aa_: 3r9a A: [184855]
        Other proteins in same PDB: d3r9ab_, d3r9ad_
        automated match to d1h0ca_
        complexed with btb
      2. 2131648Domain d3r9ac_: 3r9a C: [184857]
        Other proteins in same PDB: d3r9ab_, d3r9ad_
        automated match to d1h0ca_
        complexed with btb
    4. Domain for 4cbr:
    5. Domain for 4cbs:
    6. Domains for 4i8a:
      1. 2131657Domain d4i8aa_: 4i8a A: [196965]
        automated match to d3r9ac_
        complexed with gol
      2. 2131658Domain d4i8ab_: 4i8a B: [202593]
        automated match to d4i8aa_
        complexed with gol
      3. 2131659Domain d4i8ac_: 4i8a C: [202594]
        automated match to d4i8aa_
        complexed with gol
      4. 2131660Domain d4i8ad_: 4i8a D: [202595]
        automated match to d4i8aa_
        complexed with gol
    7. Domains for 4kxk:
      1. 2131655Domain d4kxka_: 4kxk A: [261079]
        Other proteins in same PDB: d4kxkb_, d4kxkd_
        automated match to d3r9ac_
        complexed with bme, so4
      2. 2131656Domain d4kxkc_: 4kxk C: [261080]
        Other proteins in same PDB: d4kxkb_, d4kxkd_
        automated match to d3r9ac_
        complexed with bme, so4
    8. Domains for 4kyo:
      1. 2131651Domain d4kyoa_: 4kyo A: [261083]
        Other proteins in same PDB: d4kyob_, d4kyod_
        automated match to d3r9ac_
        complexed with bme, btb, so4
      2. 2131652Domain d4kyoc_: 4kyo C: [261082]
        Other proteins in same PDB: d4kyob_, d4kyod_
        automated match to d3r9ac_
        complexed with bme, btb, so4
    9. Domains for 5f9s:
      1. 2284012Domain d5f9sa_: 5f9s A: [327313]
        automated match to d4kyoc_
        complexed with plp
      2. 2284025Domain d5f9sb_: 5f9s B: [327326]
        automated match to d4kyoc_
        complexed with plp
    10. Domains for 5hhy:
      1. 2285590Domain d5hhyb_: 5hhy B: [328891]
        automated match to d4kyoc_
        complexed with plr
      2. 2285664Domain d5hhya_: 5hhy A: [328965]
        automated match to d4kyoc_
        complexed with plr
    11. Domains for 5luc:
      1. 2295778Domain d5luce_: 5luc E: [339079]
        automated match to d4kyoc_
        complexed with btb, plp
      2. 2295780Domain d5lucb_: 5luc B: [339081]
        automated match to d4kyoc_
        complexed with btb, plp
      3. 2295783Domain d5luca_: 5luc A: [339084]
        automated match to d4kyoc_
        complexed with btb, plp
      4. 2295791Domain d5lucm_: 5luc M: [339092]
        automated match to d4kyoc_
        complexed with btb, plp
      5. 2295811Domain d5lucn_: 5luc N: [339112]
        automated match to d4kyoc_
        complexed with btb, plp
      6. 2295831Domain d5lucs_: 5luc S: [339132]
        automated match to d4kyoc_
        complexed with btb, plp
      7. 2295872Domain d5luct_: 5luc T: [339173]
        automated match to d4kyoc_
        complexed with btb, plp
      8. 2295930Domain d5lucg_: 5luc G: [339231]
        automated match to d4kyoc_
        complexed with btb, plp
    12. Domain for 5ofy:
    13. Domains for 5usr:
      1. 2292539Domain d5usrg1: 5usr G:56-440 [335840]
        Other proteins in same PDB: d5usra2, d5usre2, d5usrg2, d5usri_, d5usrj_, d5usrk_, d5usrl_
        automated match to d3lvma_
        complexed with 8q1
      2. 2292548Domain d5usra1: 5usr A:56-445 [335849]
        Other proteins in same PDB: d5usra2, d5usre2, d5usrg2, d5usri_, d5usrj_, d5usrk_, d5usrl_
        automated match to d3lvma_
        complexed with 8q1
      3. 2292556Domain d5usrc_: 5usr C: [335857]
        Other proteins in same PDB: d5usra2, d5usre2, d5usrg2, d5usri_, d5usrj_, d5usrk_, d5usrl_
        automated match to d3lvma_
        complexed with 8q1
      4. 2292595Domain d5usre1: 5usr E:56-436 [335896]
        Other proteins in same PDB: d5usra2, d5usre2, d5usrg2, d5usri_, d5usrj_, d5usrk_, d5usrl_
        automated match to d3lvma_
        complexed with 8q1
    14. Domains for 5wkp:
      1. 2298378Domain d5wkpe1: 5wkp E:56-456 [341679]
        Other proteins in same PDB: d5wkpa2, d5wkpc_, d5wkpd_, d5wkpe2, d5wkpg_, d5wkph_
        automated match to d3lvma_
        complexed with 8q1, plp
      2. 2298388Domain d5wkpa1: 5wkp A:56-455 [341689]
        Other proteins in same PDB: d5wkpa2, d5wkpc_, d5wkpd_, d5wkpe2, d5wkpg_, d5wkph_
        automated match to d3lvma_
        complexed with 8q1, plp
  6. 2131661Mouse (Mus musculus) [TaxId:10090] [189108] (2 PDB entries)
    1. Domains for 3kgw:
      1. 2131662Domain d3kgwa_: 3kgw A: [179364]
        automated match to d1h0ca_
        complexed with cl, edo, plp
      2. 2131663Domain d3kgwb_: 3kgw B: [179365]
        automated match to d1h0ca_
        complexed with cl, edo, plp
    2. Domains for 3kgx:
      1. 2131664Domain d3kgxa_: 3kgx A: [179366]
        automated match to d1h0ca_
        complexed with cl, edo, mg
      2. 2131665Domain d3kgxb_: 3kgx B: [179367]
        automated match to d1h0ca_
        complexed with cl, edo, mg
  7. 2131666Pseudomonas putida [TaxId:303] [187269] (4 PDB entries)
    1. Domains for 2o7c:
      1. 2131667Domain d2o7ca_: 2o7c A: [148663]
        automated match to d1pg8a_
        complexed with so4
      2. 2131668Domain d2o7cb_: 2o7c B: [148664]
        automated match to d1pg8a_
        complexed with so4
      3. 2131669Domain d2o7cc_: 2o7c C: [148665]
        automated match to d1pg8a_
        complexed with so4
      4. 2131670Domain d2o7cd_: 2o7c D: [148666]
        automated match to d1pg8a_
        complexed with so4
    2. Domains for 3vk2:
      1. 2131675Domain d3vk2a_: 3vk2 A: [194670]
        automated match to d1ukja_
        complexed with so4; mutant
      2. 2131676Domain d3vk2b_: 3vk2 B: [194669]
        automated match to d1ukja_
        complexed with so4; mutant
      3. 2131677Domain d3vk2c_: 3vk2 C: [194668]
        automated match to d1ukja_
        complexed with so4; mutant
      4. 2131678Domain d3vk2d_: 3vk2 D: [194671]
        automated match to d1ukja_
        complexed with so4; mutant
    3. Domains for 3vk3:
      1. 2131671Domain d3vk3a_: 3vk3 A: [194675]
        automated match to d1ukja_
        complexed with met; mutant
      2. 2131672Domain d3vk3b_: 3vk3 B: [194673]
        automated match to d1ukja_
        complexed with met; mutant
      3. 2131673Domain d3vk3c_: 3vk3 C: [194672]
        automated match to d1ukja_
        complexed with met; mutant
      4. 2131674Domain d3vk3d_: 3vk3 D: [194674]
        automated match to d1ukja_
        complexed with met; mutant
    4. Domains for 3vk4:
      1. 2131679Domain d3vk4a_: 3vk4 A: [194665]
        automated match to d1ukja_
        complexed with hcs; mutant
      2. 2131680Domain d3vk4b_: 3vk4 B: [194666]
        automated match to d1ukja_
        complexed with hcs; mutant
      3. 2131681Domain d3vk4c_: 3vk4 C: [194664]
        automated match to d1ukja_
        complexed with hcs; mutant
      4. 2131682Domain d3vk4d_: 3vk4 D: [194667]
        automated match to d1ukja_
        complexed with hcs; mutant
  8. 2131683Thale cress (Arabidopsis thaliana) [TaxId:3702] [259476] (2 PDB entries)
    1. Domains for 4q75:
      1. 2131684Domain d4q75a_: 4q75 A: [259477]
        automated match to d1t3ia_
      2. 2131685Domain d4q75b_: 4q75 B: [259970]
        automated match to d1t3ia_
    2. Domains for 4q76:
      1. 2131686Domain d4q76a_: 4q76 A: [259478]
        automated match to d1t3ia_
        mutant
      2. 2131687Domain d4q76b_: 4q76 B: [259479]
        automated match to d1t3ia_
        mutant
  9. 2131688Thermus thermophilus [TaxId:274] [187566] (1 PDB entry)

More info for Protein automated matches from c.67.1.3: Cystathionine synthase-like

Timeline for Protein automated matches from c.67.1.3: Cystathionine synthase-like: