Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2470823Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2470824Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2471297Family c.67.1.3: Cystathionine synthase-like [53402] (17 protein domains)
  6. 2471550Protein automated matches [190399] (9 species)
    not a true protein

Species:

  1. 2471551Citrobacter freundii [TaxId:1288347] [260926] (1 PDB entry)
  2. 2471553Citrobacter freundii [TaxId:546] [261234] (5 PDB entries)
    1. Domain for 4oma:
    2. Domain for 5d5s:
    3. Domain for 5e4z:
    4. Domain for 5k30:
    5. Domain for 5m3z:
  3. 2471559Escherichia coli [TaxId:155864] [255940] (3 PDB entries)
    1. Domains for 3lvj:
      1. 2471562Domain d3lvja_: 3lvj A: [239434]
        Other proteins in same PDB: d3lvjc_, d3lvjd_
        automated match to d1p3wa_
        protein/RNA complex; complexed with plp
      2. 2471563Domain d3lvjb_: 3lvj B: [239435]
        Other proteins in same PDB: d3lvjc_, d3lvjd_
        automated match to d1p3wa_
        protein/RNA complex; complexed with plp
    2. Domain for 3lvk:
    3. Domains for 3lvm:
      1. 2471560Domain d3lvma_: 3lvm A: [247521]
        Other proteins in same PDB: d3lvmb2
        automated match to d1p3wa_
        complexed with plp
      2. 2471561Domain d3lvmb1: 3lvm B:1-393 [247522]
        Other proteins in same PDB: d3lvmb2
        automated match to d1p3wa_
        complexed with plp
  4. 2471565Escherichia coli [TaxId:562] [255941] (1 PDB entry)
  5. 2471567Human (Homo sapiens) [TaxId:9606] [189951] (7 PDB entries)
    1. Domains for 2yob:
      1. 2471568Domain d2yoba_: 2yob A: [231661]
        automated match to d2yobb_
        complexed with btb, gol, plp, so4
      2. 2471569Domain d2yobb_: 2yob B: [228745]
        automated match to d3kgwb_
        complexed with btb, gol, plp, so4
    2. Domains for 3imz:
      1. 2471572Domain d3imza_: 3imz A: [305572]
        Other proteins in same PDB: d3imzb_, d3imzd_
        automated match to d3kgwb_
        complexed with btb, plp
      2. 2471573Domain d3imzc_: 3imz C: [305574]
        Other proteins in same PDB: d3imzb_, d3imzd_
        automated match to d3kgwb_
        complexed with btb, plp
    3. Domains for 3r9a:
      1. 2471570Domain d3r9aa_: 3r9a A: [184855]
        Other proteins in same PDB: d3r9ab_, d3r9ad_
        automated match to d1h0ca_
        complexed with btb
      2. 2471571Domain d3r9ac_: 3r9a C: [184857]
        Other proteins in same PDB: d3r9ab_, d3r9ad_
        automated match to d1h0ca_
        complexed with btb
    4. Domain for 4cbr:
    5. Domain for 4cbs:
    6. Domains for 5usr:
      1. 2471576Domain d5usra1: 5usr A:56-445 [335849]
        Other proteins in same PDB: d5usra2, d5usre2, d5usrg2, d5usri_, d5usrj_, d5usrk_, d5usrl_
        automated match to d3lvma_
        complexed with 8q1
      2. 2471577Domain d5usrc_: 5usr C: [335857]
        Other proteins in same PDB: d5usra2, d5usre2, d5usrg2, d5usri_, d5usrj_, d5usrk_, d5usrl_
        automated match to d3lvma_
        complexed with 8q1
      3. 2471578Domain d5usre1: 5usr E:56-436 [335896]
        Other proteins in same PDB: d5usra2, d5usre2, d5usrg2, d5usri_, d5usrj_, d5usrk_, d5usrl_
        automated match to d3lvma_
        complexed with 8q1
      4. 2471579Domain d5usrg1: 5usr G:56-440 [335840]
        Other proteins in same PDB: d5usra2, d5usre2, d5usrg2, d5usri_, d5usrj_, d5usrk_, d5usrl_
        automated match to d3lvma_
        complexed with 8q1
    7. Domains for 5wkp:
      1. 2471580Domain d5wkpa1: 5wkp A:56-455 [341689]
        Other proteins in same PDB: d5wkpa2, d5wkpc_, d5wkpd_, d5wkpe2, d5wkpg_, d5wkph_
        automated match to d3lvma_
        complexed with 8q1, plp
      2. 2471581Domain d5wkpe1: 5wkp E:56-456 [341679]
        Other proteins in same PDB: d5wkpa2, d5wkpc_, d5wkpd_, d5wkpe2, d5wkpg_, d5wkph_
        automated match to d3lvma_
        complexed with 8q1, plp
  6. 2471582Mouse (Mus musculus) [TaxId:10090] [189108] (2 PDB entries)
    1. Domains for 3kgw:
      1. 2471583Domain d3kgwa_: 3kgw A: [179364]
        automated match to d1h0ca_
        complexed with cl, edo, plp
      2. 2471584Domain d3kgwb_: 3kgw B: [179365]
        automated match to d1h0ca_
        complexed with cl, edo, plp
    2. Domains for 3kgx:
      1. 2471585Domain d3kgxa_: 3kgx A: [179366]
        automated match to d1h0ca_
        complexed with cl, edo, mg
      2. 2471586Domain d3kgxb_: 3kgx B: [179367]
        automated match to d1h0ca_
        complexed with cl, edo, mg
  7. 2471587Pseudomonas putida [TaxId:303] [187269] (1 PDB entry)
  8. 2471592Thale cress (Arabidopsis thaliana) [TaxId:3702] [259476] (2 PDB entries)
    1. Domains for 4q75:
      1. 2471593Domain d4q75a_: 4q75 A: [259477]
        automated match to d1t3ia_
      2. 2471594Domain d4q75b_: 4q75 B: [259970]
        automated match to d1t3ia_
    2. Domains for 4q76:
      1. 2471595Domain d4q76a_: 4q76 A: [259478]
        automated match to d1t3ia_
        mutant
      2. 2471596Domain d4q76b_: 4q76 B: [259479]
        automated match to d1t3ia_
        mutant
  9. 2471597Thermus thermophilus [TaxId:274] [187566] (1 PDB entry)

More info for Protein automated matches from c.67.1.3: Cystathionine synthase-like

Timeline for Protein automated matches from c.67.1.3: Cystathionine synthase-like: