Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 968085Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 975118Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 975119Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 978249Family c.2.1.0: automated matches [191313] (1 protein)
    not a true family
  6. 978250Protein automated matches [190069] (51 species)
    not a true protein

Species:

  1. 978251Aeromonas hydrophila [TaxId:380703] [189227] (1 PDB entry)
  2. 978254Aeropyrum pernix [TaxId:272557] [188386] (1 PDB entry)
  3. 978257Aquifex aeolicus [TaxId:224324] [187981] (3 PDB entries)
    1. Domains for 2p68:
      1. 978260Domain d2p68a_: 2p68 A: [167023]
        automated match to d2c07a1
      2. 978261Domain d2p68b_: 2p68 B: [167024]
        automated match to d2c07a1
    2. Domain for 2p91:
    3. Domains for 2pnf:
      1. 978258Domain d2pnfa_: 2pnf A: [167220]
        automated match to d2c07a1
        complexed with 1pe, mes
      2. 978259Domain d2pnfb_: 2pnf B: [167221]
        automated match to d2c07a1
        complexed with 1pe, mes
  4. 978263Archaeoglobus fulgidus [TaxId:2234] [188631] (1 PDB entry)
  5. 978266Arthrobacter sp. [188195] (1 PDB entry)
  6. 978268Arthrobacter sp. [TaxId:168809] [188194] (1 PDB entry)
  7. 978276Azoarcus sp. [TaxId:76114] [187073] (1 PDB entry)
  8. 978280Bacillus anthracis [TaxId:198094] [189998] (1 PDB entry)
  9. 978287Bacillus cereus [TaxId:226900] [189455] (1 PDB entry)
  10. 978289Bacillus thuringiensis [TaxId:527023] [189003] (1 PDB entry)
  11. 978294Beutenbergia cavernae [TaxId:471853] [189821] (1 PDB entry)
  12. 978297Brevibacterium saccharolyticum [TaxId:1718] [189138] (1 PDB entry)
  13. 978305Brucella melitensis [TaxId:29459] [188645] (2 PDB entries)
    1. Domain for 3emk:
    2. Domains for 3enn:
      1. 978306Domain d3enna_: 3enn A: [175103]
        automated match to d1q7ba_
      2. 978307Domain d3ennb_: 3enn B: [175104]
        automated match to d1q7ba_
      3. 978308Domain d3ennc_: 3enn C: [175105]
        automated match to d1q7ba_
      4. 978309Domain d3ennd_: 3enn D: [175106]
        automated match to d1q7ba_
  14. 978311Brucella melitensis [TaxId:359391] [189369] (1 PDB entry)
  15. 978313Burkholderia pseudomallei [TaxId:320372] [188646] (2 PDB entries)
    1. Domains for 3enk:
      1. 978314Domain d3enka_: 3enk A: [175101]
        automated match to d1ek5a_
        complexed with gud, nad
      2. 978315Domain d3enkb_: 3enk B: [175102]
        automated match to d1ek5a_
        complexed with gud, nad
    2. Domain for 3ezl:
  16. 978317Cladosporium herbarum [TaxId:29918] [189335] (2 PDB entries)
    1. Domains for 3gdf:
      1. 978318Domain d3gdfa_: 3gdf A: [176525]
        automated match to d1vl8a_
        complexed with zn
      2. 978319Domain d3gdfb_: 3gdf B: [176526]
        automated match to d1vl8a_
        complexed with zn
      3. 978320Domain d3gdfc_: 3gdf C: [176527]
        automated match to d1vl8a_
        complexed with zn
      4. 978321Domain d3gdfd_: 3gdf D: [176528]
        automated match to d1vl8a_
        complexed with zn
    2. Domains for 3gdg:
      1. 978322Domain d3gdga_: 3gdg A: [176529]
        automated match to d1vl8a_
        complexed with na
      2. 978323Domain d3gdgb_: 3gdg B: [176530]
        automated match to d1vl8a_
        complexed with na
      3. 978324Domain d3gdgc_: 3gdg C: [176531]
        automated match to d1vl8a_
        complexed with na
      4. 978325Domain d3gdgd_: 3gdg D: [176532]
        automated match to d1vl8a_
        complexed with na
  17. 978326Clostridium thermocellum [TaxId:1515] [187820] (1 PDB entry)
  18. 978328Corynebacterium glutamicum [TaxId:1718] [188585] (1 PDB entry)
  19. 978330Escherichia coli K-12 [TaxId:83333] [188668] (2 PDB entries)
    1. Domain for 3f1k:
    2. Domains for 3f1l:
      1. 978331Domain d3f1la_: 3f1l A: [175407]
        automated match to d2c07a1
      2. 978332Domain d3f1lb_: 3f1l B: [175408]
        automated match to d2c07a1
  20. 978334Escherichia coli [TaxId:217992] [188734] (2 PDB entries)
    1. Domains for 3f5q:
      1. 978335Domain d3f5qa_: 3f5q A: [175502]
        automated match to d2c07a1
      2. 978336Domain d3f5qb_: 3f5q B: [175503]
        automated match to d2c07a1
    2. Domains for 3gz4:
      1. 978337Domain d3gz4a_: 3gz4 A: [177103]
        automated match to d2c07a1
        complexed with nap
      2. 978338Domain d3gz4b_: 3gz4 B: [177104]
        automated match to d2c07a1
        complexed with nap
  21. 978339Escherichia coli [TaxId:562] [187725] (1 PDB entry)
  22. 978341Gluconobacter frateurii [TaxId:38308] [189629] (3 PDB entries)
    1. Domains for 3ai1:
      1. 978354Domain d3ai1a_: 3ai1 A: [172189]
        automated match to d1i01a_
      2. 978355Domain d3ai1b_: 3ai1 B: [172190]
        automated match to d1i01a_
    2. Domains for 3ai2:
      1. 978342Domain d3ai2a_: 3ai2 A: [172191]
        automated match to d1i01a_
        complexed with nap
      2. 978343Domain d3ai2b_: 3ai2 B: [172192]
        automated match to d1i01a_
        complexed with nap
      3. 978344Domain d3ai2c_: 3ai2 C: [172193]
        automated match to d1i01a_
        complexed with nap
      4. 978345Domain d3ai2d_: 3ai2 D: [172194]
        automated match to d1i01a_
        complexed with nap
      5. 978346Domain d3ai2e_: 3ai2 E: [172195]
        automated match to d1i01a_
        complexed with nap
      6. 978347Domain d3ai2f_: 3ai2 F: [172196]
        automated match to d1i01a_
        complexed with nap
      7. 978348Domain d3ai2g_: 3ai2 G: [172197]
        automated match to d1i01a_
        complexed with nap
      8. 978349Domain d3ai2h_: 3ai2 H: [172198]
        automated match to d1i01a_
        complexed with nap
    3. Domains for 3ai3:
      1. 978350Domain d3ai3a_: 3ai3 A: [172199]
        automated match to d1i01a_
        complexed with nap, soe, sol
      2. 978351Domain d3ai3c_: 3ai3 C: [172200]
        automated match to d1i01a_
        complexed with nap, soe, sol
      3. 978352Domain d3ai3e_: 3ai3 E: [172201]
        automated match to d1i01a_
        complexed with nap, soe, sol
      4. 978353Domain d3ai3g_: 3ai3 G: [172202]
        automated match to d1i01a_
        complexed with nap, soe, sol
  23. 978356Gluconobacter oxydans [TaxId:442] [186908] (2 PDB entries)
    1. Domains for 1zem:
      1. 978361Domain d1zemb_: 1zem B: [124985]
        Other proteins in same PDB: d1zema1
        automated match to d1iy8a_
        complexed with mg, nad
      2. 978362Domain d1zemc_: 1zem C: [124986]
        Other proteins in same PDB: d1zema1
        automated match to d1iy8a_
        complexed with mg, nad
      3. 978363Domain d1zemd_: 1zem D: [124987]
        Other proteins in same PDB: d1zema1
        automated match to d1iy8a_
        complexed with mg, nad
      4. 978364Domain d1zeme_: 1zem E: [124988]
        Other proteins in same PDB: d1zema1
        automated match to d1iy8a_
        complexed with mg, nad
      5. 978365Domain d1zemf_: 1zem F: [124989]
        Other proteins in same PDB: d1zema1
        automated match to d1iy8a_
        complexed with mg, nad
      6. 978366Domain d1zemg_: 1zem G: [124990]
        Other proteins in same PDB: d1zema1
        automated match to d1iy8a_
        complexed with mg, nad
      7. 978367Domain d1zemh_: 1zem H: [124991]
        Other proteins in same PDB: d1zema1
        automated match to d1iy8a_
        complexed with mg, nad
    2. Domains for 3awd:
      1. 978357Domain d3awda_: 3awd A: [172362]
        automated match to d1vl8a_
        complexed with cd, mg
      2. 978358Domain d3awdb_: 3awd B: [172363]
        automated match to d1vl8a_
        complexed with cd, mg
      3. 978359Domain d3awdc_: 3awd C: [172364]
        automated match to d1vl8a_
        complexed with cd, mg
      4. 978360Domain d3awdd_: 3awd D: [172365]
        automated match to d1vl8a_
        complexed with cd, mg
  24. 978368Human (Homo sapiens) [TaxId:9606] [186944] (2 PDB entries)
    1. Domains for 2ag5:
      1. 978369Domain d2ag5b_: 2ag5 B: [126720]
        Other proteins in same PDB: d2ag5a1
        automated match to d1nffa_
        complexed with nad, so4
      2. 978370Domain d2ag5c_: 2ag5 C: [126721]
        Other proteins in same PDB: d2ag5a1
        automated match to d1nffa_
        complexed with nad, so4
      3. 978371Domain d2ag5d_: 2ag5 D: [126722]
        Other proteins in same PDB: d2ag5a1
        automated match to d1nffa_
        complexed with nad, so4
    2. Domains for 2pd6:
      1. 978372Domain d2pd6a_: 2pd6 A: [167138]
        automated match to d1q7ba_
        complexed with nad
      2. 978373Domain d2pd6b_: 2pd6 B: [167139]
        automated match to d1q7ba_
        complexed with nad
      3. 978374Domain d2pd6c_: 2pd6 C: [167140]
        automated match to d1q7ba_
        complexed with nad
      4. 978375Domain d2pd6d_: 2pd6 D: [167141]
        automated match to d1q7ba_
        complexed with nad
  25. 978376Mayapple (Podophyllum peltatum) [TaxId:35933] [186973] (3 PDB entries)
    1. Domain for 2bgk:
    2. Domain for 2bgl:
    3. Domain for 2bgm:
  26. 978380Mesorhizobium loti [TaxId:381] [189923] (2 PDB entries)
    1. Domains for 3ndr:
      1. 978385Domain d3ndra_: 3ndr A: [182174]
        automated match to d2ew8a1
        complexed with nad
      2. 978386Domain d3ndrb_: 3ndr B: [182175]
        automated match to d2ew8a1
        complexed with nad
      3. 978387Domain d3ndrc_: 3ndr C: [182176]
        automated match to d2ew8a1
        complexed with nad
      4. 978388Domain d3ndrd_: 3ndr D: [182177]
        automated match to d2ew8a1
        complexed with nad
    2. Domains for 3nug:
      1. 978381Domain d3nuga_: 3nug A: [182558]
        automated match to d2ew8a1
        complexed with acy, nad
      2. 978382Domain d3nugb_: 3nug B: [182559]
        automated match to d2ew8a1
        complexed with acy, nad
      3. 978383Domain d3nugc_: 3nug C: [182560]
        automated match to d2ew8a1
        complexed with acy, nad
      4. 978384Domain d3nugd_: 3nug D: [182561]
        automated match to d2ew8a1
        complexed with acy, nad
  27. 978389Mycobacterium abscessus [TaxId:561007] [189986] (1 PDB entry)
  28. 978398Mycobacterium avium [TaxId:1770] [189537] (2 PDB entries)
    1. Domains for 3pgx:
      1. 978399Domain d3pgxa_: 3pgx A: [183723]
        automated match to d1iy8a_
        complexed with nad
      2. 978400Domain d3pgxb_: 3pgx B: [183724]
        automated match to d1iy8a_
        complexed with nad
      3. 978401Domain d3pgxc_: 3pgx C: [183725]
        automated match to d1iy8a_
        complexed with nad
      4. 978402Domain d3pgxd_: 3pgx D: [183726]
        automated match to d1iy8a_
        complexed with nad
    2. Domains for 3tsc:
      1. 978403Domain d3tsca_: 3tsc A: [185930]
        automated match to d1g6ka_
        complexed with mpd, nad
      2. 978404Domain d3tscb_: 3tsc B: [185931]
        automated match to d1g6ka_
        complexed with mpd, nad
      3. 978405Domain d3tscc_: 3tsc C: [185932]
        automated match to d1g6ka_
        complexed with mpd, nad
      4. 978406Domain d3tscd_: 3tsc D: [185933]
        automated match to d1g6ka_
        complexed with mpd, nad
  29. 978407Mycobacterium avium [TaxId:243243] [189589] (2 PDB entries)
    1. Domains for 3pxx:
      1. 978412Domain d3pxxa_: 3pxx A: [184072]
        automated match to d1dohb_
        complexed with nad
      2. 978413Domain d3pxxb_: 3pxx B: [184073]
        automated match to d1dohb_
        complexed with nad
      3. 978414Domain d3pxxc_: 3pxx C: [184074]
        automated match to d1dohb_
        complexed with nad
      4. 978415Domain d3pxxd_: 3pxx D: [184075]
        automated match to d1dohb_
        complexed with nad
      5. 978416Domain d3pxxe_: 3pxx E: [184076]
        automated match to d1dohb_
        complexed with nad
    2. Domains for 3uve:
      1. 978408Domain d3uvea_: 3uve A: [186416]
        automated match to d1iy8a_
        complexed with edo, nad, pg4
      2. 978409Domain d3uveb_: 3uve B: [186417]
        automated match to d1iy8a_
        complexed with edo, nad, pg4
      3. 978410Domain d3uvec_: 3uve C: [186418]
        automated match to d1iy8a_
        complexed with edo, nad, pg4
      4. 978411Domain d3uved_: 3uve D: [186419]
        automated match to d1iy8a_
        complexed with edo, nad, pg4
  30. 978417Mycobacterium marinum [TaxId:216594] [189743] (1 PDB entry)
  31. 978425Mycobacterium smegmatis [TaxId:246196] [189539] (2 PDB entries)
    1. Domains for 3pk0:
      1. 978426Domain d3pk0a_: 3pk0 A: [183805]
        automated match to d2c07a1
        complexed with ca, cl, gol, peg
      2. 978427Domain d3pk0b_: 3pk0 B: [183806]
        automated match to d2c07a1
        complexed with ca, cl, gol, peg
      3. 978428Domain d3pk0c_: 3pk0 C: [183807]
        automated match to d2c07a1
        complexed with ca, cl, gol, peg
      4. 978429Domain d3pk0d_: 3pk0 D: [183808]
        automated match to d2c07a1
        complexed with ca, cl, gol, peg
    2. Domain for 3ucx:
  32. 978431Mycobacterium tuberculosis [TaxId:1773] [186788] (1 PDB entry)
  33. 978433Mycobacterium tuberculosis [TaxId:83332] [186789] (2 PDB entries)
    1. Domain for 1uzm:
    2. Domains for 1uzn:
      1. 978435Domain d1uzna_: 1uzn A: [119813]
        automated match to d1q7ba_
        complexed with cs, nap
      2. 978436Domain d1uznb_: 1uzn B: [119814]
        automated match to d1q7ba_
        complexed with cs, nap
  34. 978437Ocimum basilicum [TaxId:39350] [188465] (7 PDB entries)
    1. Domains for 2qw8:
      1. 978440Domain d2qw8a_: 2qw8 A: [167845]
        automated match to d1qyca_
        complexed with nap, no3, peg
      2. 978441Domain d2qw8b_: 2qw8 B: [167846]
        automated match to d1qyca_
        complexed with nap, no3, peg
    2. Domains for 2qx7:
      1. 978444Domain d2qx7a_: 2qx7 A: [167851]
        automated match to d1qyca_
        complexed with nap
      2. 978445Domain d2qx7b_: 2qx7 B: [167852]
        automated match to d1qyca_
        complexed with nap
    3. Domains for 2qys:
      1. 978446Domain d2qysa_: 2qys A: [167886]
        automated match to d1qyca_
      2. 978447Domain d2qysb_: 2qys B: [167887]
        automated match to d1qyca_
    4. Domains for 2qzz:
      1. 978442Domain d2qzza_: 2qzz A: [167899]
        automated match to d1qyca_
        complexed with emf, nap
      2. 978443Domain d2qzzb_: 2qzz B: [167900]
        automated match to d1qyca_
        complexed with emf, nap
    5. Domains for 2r2g:
      1. 978448Domain d2r2ga_: 2r2g A: [167936]
        automated match to d1qyca_
        complexed with emf, nap
      2. 978449Domain d2r2gb_: 2r2g B: [167937]
        automated match to d1qyca_
        complexed with emf, nap
    6. Domains for 2r6j:
      1. 978438Domain d2r6ja_: 2r6j A: [167995]
        automated match to d1qyca_
        complexed with ndp
      2. 978439Domain d2r6jb_: 2r6j B: [167996]
        automated match to d1qyca_
        complexed with ndp
    7. Domains for 3c3x:
      1. 978450Domain d3c3xa_: 3c3x A: [173028]
        automated match to d1qyca_
        complexed with nap
      2. 978451Domain d3c3xb_: 3c3x B: [173029]
        automated match to d1qyca_
        complexed with nap
  35. 978452Papaver somniferum [TaxId:3469] [189571] (1 PDB entry)
  36. 978454Pseudomonas syringae [TaxId:323] [188999] (1 PDB entry)
  37. 978457Pyrobaculum calidifontis [TaxId:410359] [189396] (2 PDB entries)
    1. Domain for 3icp:
    2. Domain for 3ko8:
  38. 978460Pyrococcus horikoshii [TaxId:70601] [187049] (1 PDB entry)
  39. 978463Rhodobacter sphaeroides [TaxId:1063] [189314] (2 PDB entries)
    1. Domains for 2wdz:
      1. 978468Domain d2wdza_: 2wdz A: [169259]
        automated match to d1vl8b_
        complexed with 1sp, mg, nad
      2. 978469Domain d2wdzb_: 2wdz B: [169260]
        automated match to d1vl8b_
        complexed with 1sp, mg, nad
      3. 978470Domain d2wdzc_: 2wdz C: [169261]
        automated match to d1vl8b_
        complexed with 1sp, mg, nad
      4. 978471Domain d2wdzd_: 2wdz D: [169262]
        automated match to d1vl8b_
        complexed with 1sp, mg, nad
    2. Domains for 3lqf:
      1. 978464Domain d3lqfa_: 3lqf A: [180508]
        automated match to d1vl8b_
        complexed with mg, mry, nad
      2. 978465Domain d3lqfb_: 3lqf B: [180509]
        automated match to d1vl8b_
        complexed with mg, mry, nad
      3. 978466Domain d3lqfc_: 3lqf C: [180510]
        automated match to d1vl8b_
        complexed with mg, mry, nad
      4. 978467Domain d3lqfd_: 3lqf D: [180511]
        automated match to d1vl8b_
        complexed with mg, mry, nad
  40. 978472Rickettsia prowazekii [TaxId:782] [188682] (1 PDB entry)
  41. 978475Salmonella enterica [TaxId:99287] [189011] (1 PDB entry)
  42. 978478Shigella flexneri [TaxId:623] [188679] (2 PDB entries)
    1. Domains for 3f5s:
      1. 978479Domain d3f5sa_: 3f5s A: [175504]
        automated match to d2c07a1
      2. 978480Domain d3f5sb_: 3f5s B: [175505]
        automated match to d2c07a1
    2. Domain for 3gy0:
  43. 978482Sinorhizobium meliloti [TaxId:266834] [189876] (1 PDB entry)
  44. 978485Sphingomonas sp. [TaxId:90322] [189409] (2 PDB entries)
    1. Domains for 3afm:
      1. 978486Domain d3afma_: 3afm A: [172036]
        automated match to d1spxa_
      2. 978487Domain d3afmb_: 3afm B: [172037]
        automated match to d1spxa_
    2. Domains for 3afn:
      1. 978488Domain d3afna_: 3afn A: [172038]
        automated match to d1spxa_
        complexed with nap, tbu
      2. 978489Domain d3afnb_: 3afn B: [172039]
        automated match to d1spxa_
        complexed with nap, tbu
      3. 978490Domain d3afnc_: 3afn C: [172040]
        automated match to d1spxa_
        complexed with nap, tbu
      4. 978491Domain d3afnd_: 3afn D: [172041]
        automated match to d1spxa_
        complexed with nap, tbu
  45. 978492Staphylococcus aureus [TaxId:158878] [189493] (1 PDB entry)
  46. 978494Staphylococcus aureus [TaxId:93061] [189880] (1 PDB entry)
  47. 978497Streptomyces coelicolor [TaxId:100226] [187919] (1 PDB entry)
  48. 978500Thermococcus sibiricus [TaxId:604354] [189611] (1 PDB entry)
  49. 978502Thermoplasma acidophilum [TaxId:2303] [187636] (4 PDB entries)
    1. Domains for 2dtd:
      1. 978507Domain d2dtda_: 2dtd A: [163687]
        automated match to d2d1ya1
        complexed with so4
      2. 978508Domain d2dtdb_: 2dtd B: [163688]
        automated match to d2d1ya1
        complexed with so4
    2. Domains for 2dte:
      1. 978505Domain d2dtea_: 2dte A: [163689]
        automated match to d2d1ya1
        complexed with nai
      2. 978506Domain d2dteb_: 2dte B: [163690]
        automated match to d2d1ya1
        complexed with nai
    3. Domains for 2dtx:
      1. 978503Domain d2dtxa_: 2dtx A: [163693]
        automated match to d2d1ya1
        complexed with bma, so4
      2. 978504Domain d2dtxb_: 2dtx B: [163694]
        automated match to d2d1ya1
        complexed with bma, so4
    4. Domains for 2zk7:
      1. 978509Domain d2zk7a_: 2zk7 A: [171279]
        automated match to d2d1ya1
        mutant
      2. 978510Domain d2zk7b_: 2zk7 B: [171280]
        automated match to d2d1ya1
        mutant
  50. 978511Thermus thermophilus [TaxId:300852] [187989] (5 PDB entries)
    1. Domain for 1x1e:
    2. Domains for 2ehd:
      1. 978520Domain d2ehda_: 2ehd A: [164028]
        automated match to d2bd0a1
        complexed with co
      2. 978521Domain d2ehdb_: 2ehd B: [164029]
        automated match to d2bd0a1
        complexed with co
    3. Domain for 2ekp:
    4. Domains for 2ekq:
      1. 978513Domain d2ekqa_: 2ekq A: [164135]
        automated match to d1vl8a_
        complexed with gol, so4
      2. 978514Domain d2ekqb_: 2ekq B: [164136]
        automated match to d1vl8a_
        complexed with gol, so4
      3. 978515Domain d2ekqc_: 2ekq C: [164137]
        automated match to d1vl8a_
        complexed with gol, so4
      4. 978516Domain d2ekqd_: 2ekq D: [164138]
        automated match to d1vl8a_
        complexed with gol, so4
    5. Domains for 2ph3:
      1. 978518Domain d2ph3a_: 2ph3 A: [167185]
        automated match to d1i01a_
      2. 978519Domain d2ph3b_: 2ph3 B: [167186]
        automated match to d1i01a_
  51. 978522Xanthobacter autotrophicus [TaxId:78245] [187540] (1 PDB entry)

More info for Protein automated matches from c.2.1.0: automated matches

Timeline for Protein automated matches from c.2.1.0: automated matches: