PDB entry 3s55

View 3s55 on RCSB PDB site
Description: Crystal structure of a putative short-chain dehydrogenase/reductase from Mycobacterium abscessus bound to NAD
Class: oxidoreductase
Keywords: Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, ortholog, SDR, oxidoreductase
Deposited on 2011-05-20, released 2011-06-08
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-06-08, with a file datestamp of 2011-06-03.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.192
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: putative short-chain dehydrogenase/reductase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_1408c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3s55a_
  • Chain 'B':
    Compound: putative short-chain dehydrogenase/reductase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_1408c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3s55b_
  • Chain 'C':
    Compound: putative short-chain dehydrogenase/reductase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_1408c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3s55c_
  • Chain 'D':
    Compound: putative short-chain dehydrogenase/reductase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_1408c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3s55d_
  • Chain 'E':
    Compound: putative short-chain dehydrogenase/reductase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_1408c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3s55e_
  • Chain 'F':
    Compound: putative short-chain dehydrogenase/reductase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_1408c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3s55f_
  • Chain 'G':
    Compound: putative short-chain dehydrogenase/reductase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_1408c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3s55g_
  • Chain 'H':
    Compound: putative short-chain dehydrogenase/reductase
    Species: Mycobacterium abscessus [TaxId:561007]
    Gene: MAB_1408c
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3s55h_
  • Heterogens: NAD, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3s55A (A:)
gpgsmadfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddla
etvalvektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpeves
aqwdevigtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvig
ltkcaahdlvgygitvnavapgnietpmthndfvfgtmrpdlekptlkdvesvfaslhlq
yapflkpeevtravlflvdeasshitgtvlpidagatarmi

    Sequence, based on observed residues (ATOM records): (download) 
    >3s55A (A:)
adfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddlaetval
vektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpevesaqwde
vigtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvigltkca
ahdlvgygitvnavapgnietpmthndfvfgtptlkdvesvfaslhlqyapflkpeevtr
avlflvdeasshitgtvlpidagatarmi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3s55B (B:)
gpgsmadfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddla
etvalvektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpeves
aqwdevigtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvig
ltkcaahdlvgygitvnavapgnietpmthndfvfgtmrpdlekptlkdvesvfaslhlq
yapflkpeevtravlflvdeasshitgtvlpidagatarmi

    Sequence, based on observed residues (ATOM records): (download) 
    >3s55B (B:)
dfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddlaetvalv
ektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpevesaqwdev
igtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvigltkcaa
hdlvgygitvnavapgnietpmthndfvfgtmrptlkdvesvfaslhlqyapflkpeevt
ravlflvdeasshitgtvlpidagatarmi

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3s55C (C:)
gpgsmadfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddla
etvalvektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpeves
aqwdevigtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvig
ltkcaahdlvgygitvnavapgnietpmthndfvfgtmrpdlekptlkdvesvfaslhlq
yapflkpeevtravlflvdeasshitgtvlpidagatarmi

    Sequence, based on observed residues (ATOM records): (download) 
    >3s55C (C:)
adfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddlaetval
vektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpevesaqwde
vigtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvigltkca
ahdlvgygitvnavapgnietpmthndfvfgkptlkdvesvfaslhlqyapflkpeevtr
avlflvdeasshitgtvlpidagatarmi

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3s55D (D:)
gpgsmadfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddla
etvalvektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpeves
aqwdevigtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvig
ltkcaahdlvgygitvnavapgnietpmthndfvfgtmrpdlekptlkdvesvfaslhlq
yapflkpeevtravlflvdeasshitgtvlpidagatarmi

    Sequence, based on observed residues (ATOM records): (download) 
    >3s55D (D:)
dfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddlaetvalv
ektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpevesaqwdev
igtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvigltkcaa
hdlvgygitvnavapgnietpmthndfvfgtmrpdlekptlkdvesvfaslhlqyapflk
peevtravlflvdeasshitgtvlpidagatarmi

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3s55E (E:)
gpgsmadfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddla
etvalvektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpeves
aqwdevigtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvig
ltkcaahdlvgygitvnavapgnietpmthndfvfgtmrpdlekptlkdvesvfaslhlq
yapflkpeevtravlflvdeasshitgtvlpidagatarmi

    Sequence, based on observed residues (ATOM records): (download) 
    >3s55E (E:)
adfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddlaetval
vektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpevesaqwde
vigtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvigltkca
ahdlvgygitvnavapgnietpmthndfvfgtkdvesvfaslhlqyapflkpeevtravl
flvdeasshitgtvlpidagatarmi

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3s55F (F:)
gpgsmadfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddla
etvalvektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpeves
aqwdevigtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvig
ltkcaahdlvgygitvnavapgnietpmthndfvfgtmrpdlekptlkdvesvfaslhlq
yapflkpeevtravlflvdeasshitgtvlpidagatarmi

    Sequence, based on observed residues (ATOM records): (download) 
    >3s55F (F:)
dfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddlaetvalv
ektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpevesaqwdev
igtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvigltkcaa
hdlvgygitvnavapgnietpmthndfvfgtmrpdlekptlkdvesvfaslhlqyapflk
peevtravlflvdeasshitgtvlpidagatarmi

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3s55G (G:)
gpgsmadfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddla
etvalvektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpeves
aqwdevigtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvig
ltkcaahdlvgygitvnavapgnietpmthndfvfgtmrpdlekptlkdvesvfaslhlq
yapflkpeevtravlflvdeasshitgtvlpidagatarmi

    Sequence, based on observed residues (ATOM records): (download) 
    >3s55G (G:)
adfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddlaetval
vektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpevesaqwde
vigtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvigltkca
ahdlvgygitvnavapgnietpmthndfvfgtptlkdvesvfaslhlqyapflkpeevtr
avlflvdeasshitgtvlpidagatarmi

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3s55H (H:)
gpgsmadfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddla
etvalvektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpeves
aqwdevigtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvig
ltkcaahdlvgygitvnavapgnietpmthndfvfgtmrpdlekptlkdvesvfaslhlq
yapflkpeevtravlflvdeasshitgtvlpidagatarmi

    Sequence, based on observed residues (ATOM records): (download) 
    >3s55H (H:)
dfegktalitggargmgrshavalaeagadiaicdrcensdvvgyplataddlaetvalv
ektgrrcisakvdvkdraalesfvaeaedtlggidiaitnagistiallpevesaqwdev
igtnltgtfntiaavapgmikrnygrivtvssmlghsanfaqasyvsskwgvigltkcaa
hdlvgygitvnavapgnietpmthndfvfgtmrpptlkdvesvfaslhlqyapflkpeev
travlflvdeasshitgtvlpidagatarmi