Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2012598Fold a.138: Multiheme cytochromes [48694] (1 superfamily)
    variable number of helices and little beta structure; not a true fold
  4. 2012599Superfamily a.138.1: Multiheme cytochromes [48695] (4 families) (S)
    duplication: contains multiple CxxCH motifs
  5. 2012738Family a.138.1.3: Di-heme elbow motif [48711] (8 protein domains)
    the main characteristic feature of this motif is the packing of its two hemes
    many members contains one or more complete motifs flanked by incomplete motifs and/or other domains
  6. 2012832Protein automated matches [190276] (11 species)
    not a true protein

Species:

  1. 2012833Desulfovibrio desulfuricans [311126] (1 PDB entry)
  2. 2012838Desulfovibrio vulgaris [TaxId:882] [187896] (2 PDB entries)
    1. Domains for 2j7a:
      1. 2012839Domain d2j7aa_: 2j7a A: [165927]
        automated match to d1oaha_
        complexed with act, ca, hem, lmt
      2. 2012840Domain d2j7ab_: 2j7a B: [165928]
        automated match to d1oaha_
        complexed with act, ca, hem, lmt
      3. 2012841Domain d2j7ad_: 2j7a D: [165929]
        automated match to d1oaha_
        complexed with act, ca, hem, lmt
      4. 2012842Domain d2j7ae_: 2j7a E: [165930]
        automated match to d1oaha_
        complexed with act, ca, hem, lmt
      5. 2012843Domain d2j7ag_: 2j7a G: [165931]
        automated match to d1oaha_
        complexed with act, ca, hem, lmt
      6. 2012844Domain d2j7ah_: 2j7a H: [165932]
        automated match to d1oaha_
        complexed with act, ca, hem, lmt
      7. 2012845Domain d2j7aj_: 2j7a J: [165933]
        automated match to d1oaha_
        complexed with act, ca, hem, lmt
      8. 2012846Domain d2j7ak_: 2j7a K: [165934]
        automated match to d1oaha_
        complexed with act, ca, hem, lmt
      9. 2012847Domain d2j7am_: 2j7a M: [165935]
        automated match to d1oaha_
        complexed with act, ca, hem, lmt
      10. 2012848Domain d2j7an_: 2j7a N: [165936]
        automated match to d1oaha_
        complexed with act, ca, hem, lmt
      11. 2012849Domain d2j7ap_: 2j7a P: [165937]
        automated match to d1oaha_
        complexed with act, ca, hem, lmt
      12. 2012850Domain d2j7aq_: 2j7a Q: [165938]
        automated match to d1oaha_
        complexed with act, ca, hem, lmt
    2. Domains for 2vr0:
      1. 2012851Domain d2vr0a_: 2vr0 A: [206418]
        automated match to d2j7ah_
        complexed with ca, hem, hqo
      2. 2012852Domain d2vr0b_: 2vr0 B: [206419]
        automated match to d2j7ah_
        complexed with ca, hem, hqo
      3. 2012853Domain d2vr0d_: 2vr0 D: [206420]
        automated match to d2j7ah_
        complexed with ca, hem, hqo
      4. 2012854Domain d2vr0e_: 2vr0 E: [206421]
        automated match to d2j7ah_
        complexed with ca, hem, hqo
  3. 2012855Escherichia coli K-12 [TaxId:83333] [189512] (1 PDB entry)
  4. 2012860Escherichia coli [TaxId:562] [187218] (2 PDB entries)
    1. Domains for 2rdz:
      1. 2012865Domain d2rdza_: 2rdz A: [151967]
        automated match to d1gu6a_
        complexed with ca, edo, hec, so4
      2. 2012866Domain d2rdzb_: 2rdz B: [151968]
        automated match to d1gu6a_
        complexed with ca, edo, hec, so4
      3. 2012867Domain d2rdzc_: 2rdz C: [151969]
        automated match to d1gu6a_
        complexed with ca, edo, hec, so4
      4. 2012868Domain d2rdzd_: 2rdz D: [151970]
        automated match to d1gu6a_
        complexed with ca, edo, hec, so4
    2. Domains for 3tor:
      1. 2012861Domain d3tora_: 3tor A: [185897]
        automated match to d1gu6a_
        complexed with ca, eu, hec
      2. 2012862Domain d3torb_: 3tor B: [185898]
        automated match to d1gu6a_
        complexed with ca, eu, hec
      3. 2012863Domain d3torc_: 3tor C: [185899]
        automated match to d1gu6a_
        complexed with ca, eu, hec
      4. 2012864Domain d3tord_: 3tor D: [185900]
        automated match to d1gu6a_
        complexed with ca, eu, hec
  5. 2012869Escherichia coli [TaxId:83333] [269982] (1 PDB entry)
  6. 2012872Nitrosomonas europaea [TaxId:228410] [256253] (1 PDB entry)
  7. 2012876Nitrosomonas europaea [TaxId:915] [256367] (2 PDB entries)
    1. Domains for 4n4n:
      1. 2012877Domain d4n4na_: 4n4n A: [253875]
        automated match to d1fgja_
        complexed with hec, hem, k, po4
      2. 2012878Domain d4n4nc_: 4n4n C: [253876]
        automated match to d1fgja_
        complexed with hec, hem, k, po4
      3. 2012879Domain d4n4ne_: 4n4n E: [253877]
        automated match to d1fgja_
        complexed with hec, hem, k, po4
    2. Domains for 4n4o:
      1. 2012880Domain d4n4oa_: 4n4o A: [253878]
        automated match to d1fgja_
        complexed with 12p, hec, hem, hoa, k, po4
      2. 2012881Domain d4n4oc_: 4n4o C: [253879]
        automated match to d1fgja_
        complexed with 12p, hec, hem, hoa, k, po4
      3. 2012882Domain d4n4oe_: 4n4o E: [253880]
        automated match to d1fgja_
        complexed with 12p, hec, hem, hoa, k, po4
  8. 2012883Shewanella frigidimarina [TaxId:318167] [255317] (1 PDB entry)
  9. 2012885Shewanella oneidensis [TaxId:70863] [195500] (1 PDB entry)
  10. 2012888Wolinella succinogenes [TaxId:273121] [187068] (2 PDB entries)
    1. Domain for 2e80:
    2. Domain for 2e81:
  11. 2012891Wolinella succinogenes [TaxId:844] [187217] (4 PDB entries)
    1. Domain for 3bnf:
    2. Domain for 3bng:
    3. Domain for 3bnh:
    4. Domain for 3bnj:

More info for Protein automated matches from a.138.1.3: Di-heme elbow motif

Timeline for Protein automated matches from a.138.1.3: Di-heme elbow motif: