SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: Glycerol kinase

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2122050Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2122051Superfamily c.55.1: Actin-like ATPase domain [53067] (16 families) (S)
    duplication contains two domains of this fold
  5. 2122736Family c.55.1.4: Glycerol kinase [53089] (1 protein)
  6. 2122737Protein Glycerol kinase [53090] (2 species)

Species:

  1. 2122738Enterococcus casseliflavus [TaxId:37734] [117641] (8 PDB entries)
    Uniprot O34153 5-491
    1. Domains for 1r59:
      1. 2122771Domain d1r59o1: 1r59 O:5-256 [111697]
      2. 2122772Domain d1r59o2: 1r59 O:257-491 [111698]
      3. 2122773Domain d1r59x1: 1r59 X:5-256 [111699]
      4. 2122774Domain d1r59x2: 1r59 X:257-491 [111700]
    2. Domains for 1xup:
      1. 2122775Domain d1xupo1: 1xup O:6-256 [116062]
        complexed with gol
      2. 2122776Domain d1xupo2: 1xup O:257-491 [116063]
        complexed with gol
      3. 2122777Domain d1xupx1: 1xup X:6-256 [116064]
        complexed with gol
      4. 2122778Domain d1xupx2: 1xup X:257-491 [116065]
        complexed with gol
    3. Domains for 3d7e:
      1. 2122751Domain d3d7eo1: 3d7e O:5-254 [209034]
        automated match to d1glfo1
        complexed with gol; mutant
      2. 2122752Domain d3d7eo2: 3d7e O:255-499 [209035]
        automated match to d3ezwd2
        complexed with gol; mutant
      3. 2122753Domain d3d7ex1: 3d7e X:5-254 [209036]
        automated match to d1glfo1
        complexed with gol; mutant
      4. 2122754Domain d3d7ex2: 3d7e X:255-499 [209037]
        automated match to d3ezwd2
        complexed with gol; mutant
    4. Domains for 3flc:
      1. 2122747Domain d3flco1: 3flc O:3-254 [210001]
        automated match to d1glfo1
        complexed with gol, so4; mutant
      2. 2122748Domain d3flco2: 3flc O:255-499 [210002]
        automated match to d3ezwd2
        complexed with gol, so4; mutant
      3. 2122749Domain d3flcx1: 3flc X:3-254 [210003]
        automated match to d1glfo1
        complexed with gol, so4; mutant
      4. 2122750Domain d3flcx2: 3flc X:255-499 [210004]
        automated match to d3ezwd2
        complexed with gol, so4; mutant
    5. Domains for 3h3n:
      1. 2122743Domain d3h3no1: 3h3n O:2-254 [210834]
        automated match to d1glfo1
        complexed with edo, gol, po4
      2. 2122744Domain d3h3no2: 3h3n O:255-502 [210835]
        automated match to d3ezwd2
        complexed with edo, gol, po4
      3. 2122745Domain d3h3nx1: 3h3n X:2-254 [210836]
        automated match to d1glfo1
        complexed with edo, gol, po4
      4. 2122746Domain d3h3nx2: 3h3n X:255-502 [210837]
        automated match to d3ezwd2
        complexed with edo, gol, po4
    6. Domains for 3h3o:
      1. 2122755Domain d3h3ob1: 3h3o B:3-254 [210838]
        automated match to d1glfo1
        complexed with edo, po4
      2. 2122756Domain d3h3ob2: 3h3o B:255-501 [210839]
        automated match to d3ezwd2
        complexed with edo, po4
      3. 2122757Domain d3h3oc1: 3h3o C:5-254 [210840]
        automated match to d1glfo1
        complexed with edo, po4
      4. 2122758Domain d3h3oc2: 3h3o C:255-502 [210841]
        automated match to d3ezwd2
        complexed with edo, po4
      5. 2122759Domain d3h3oo1: 3h3o O:3-254 [210842]
        automated match to d1glfo1
        complexed with edo, po4
      6. 2122760Domain d3h3oo2: 3h3o O:255-500 [210843]
        automated match to d3ezwd2
        complexed with edo, po4
      7. 2122761Domain d3h3ox1: 3h3o X:3-254 [210844]
        automated match to d1glfo1
        complexed with edo, po4
      8. 2122762Domain d3h3ox2: 3h3o X:255-501 [210845]
        automated match to d3ezwd2
        complexed with edo, po4
    7. Domains for 3h45:
      1. 2122763Domain d3h45c1: 3h45 C:3-254 [210852]
        automated match to d1glfo1
        complexed with edo, po4
      2. 2122764Domain d3h45c2: 3h45 C:255-502 [210853]
        automated match to d3ezwd2
        complexed with edo, po4
      3. 2122765Domain d3h45d1: 3h45 D:4-254 [210854]
        automated match to d1glfo1
        complexed with edo, po4
      4. 2122766Domain d3h45d2: 3h45 D:255-502 [210855]
        automated match to d3ezwd2
        complexed with edo, po4
      5. 2122767Domain d3h45o1: 3h45 O:2-254 [210856]
        automated match to d1glfo1
        complexed with edo, po4
      6. 2122768Domain d3h45o2: 3h45 O:255-501 [210857]
        automated match to d3ezwd2
        complexed with edo, po4
      7. 2122769Domain d3h45x1: 3h45 X:3-254 [210858]
        automated match to d1glfo1
        complexed with edo, po4
      8. 2122770Domain d3h45x2: 3h45 X:255-501 [210859]
        automated match to d3ezwd2
        complexed with edo, po4
    8. Domains for 3h46:
      1. 2122739Domain d3h46o1: 3h46 O:3-254 [210860]
        automated match to d1glfo1
        complexed with edo, gol, so4
      2. 2122740Domain d3h46o2: 3h46 O:255-502 [210861]
        automated match to d3ezwd2
        complexed with edo, gol, so4
      3. 2122741Domain d3h46x1: 3h46 X:3-254 [210862]
        automated match to d1glfo1
        complexed with edo, gol, so4
      4. 2122742Domain d3h46x2: 3h46 X:255-502 [210863]
        automated match to d3ezwd2
        complexed with edo, gol, so4
  2. 2122779Escherichia coli [TaxId:562] [53091] (14 PDB entries)
    1. Domains for 1bo5:
      1. 2122850Domain d1bo5o1: 1bo5 O:2-253 [33541]
        complexed with fbp, gol
      2. 2122851Domain d1bo5o2: 1bo5 O:254-499 [33542]
        complexed with fbp, gol
      3. 2122852Domain d1bo5z1: 1bo5 Z:2-253 [33543]
        complexed with fbp, gol
      4. 2122853Domain d1bo5z2: 1bo5 Z:254-499 [33544]
        complexed with fbp, gol
    2. Domains for 1bot:
      1. 2122846Domain d1boto1: 1bot O:3-253 [33537]
        complexed with epe, gol
      2. 2122847Domain d1boto2: 1bot O:254-499 [33538]
        complexed with epe, gol
      3. 2122848Domain d1botz1: 1bot Z:2-253 [33539]
        complexed with epe, gol
      4. 2122849Domain d1botz2: 1bot Z:254-499 [33540]
        complexed with epe, gol
    3. Domains for 1bu6:
      1. 2122808Domain d1bu6o1: 1bu6 O:3-253 [33499]
        complexed with gol, so4; mutant
      2. 2122809Domain d1bu6o2: 1bu6 O:254-499 [33500]
        complexed with gol, so4; mutant
      3. 2122810Domain d1bu6x1: 1bu6 X:3-253 [33501]
        complexed with gol, so4; mutant
      4. 2122811Domain d1bu6x2: 1bu6 X:254-500 [33502]
        complexed with gol, so4; mutant
      5. 2122812Domain d1bu6y1: 1bu6 Y:2-253 [33503]
        complexed with gol, so4; mutant
      6. 2122813Domain d1bu6y2: 1bu6 Y:254-500 [33504]
        complexed with gol, so4; mutant
      7. 2122814Domain d1bu6z1: 1bu6 Z:3-253 [33505]
        complexed with gol, so4; mutant
      8. 2122815Domain d1bu6z2: 1bu6 Z:254-500 [33506]
        complexed with gol, so4; mutant
    4. Domains for 1bwf:
      1. 2122838Domain d1bwfo1: 1bwf O:2-253 [33529]
        complexed with atf, gol, mg; mutant
      2. 2122839Domain d1bwfo2: 1bwf O:254-499 [33530]
        complexed with atf, gol, mg; mutant
      3. 2122840Domain d1bwfy1: 1bwf Y:2-253 [33531]
        complexed with atf, gol, mg; mutant
      4. 2122841Domain d1bwfy2: 1bwf Y:254-499 [33532]
        complexed with atf, gol, mg; mutant
    5. Domains for 1gla:
      1. 2122816Domain d1glag1: 1gla G:4-253 [33507]
        Other proteins in same PDB: d1glaf_
        complexed with gol
      2. 2122817Domain d1glag2: 1gla G:254-499 [33508]
        Other proteins in same PDB: d1glaf_
        complexed with gol
    6. Domains for 1glb:
      1. 2122826Domain d1glbg1: 1glb G:4-253 [33517]
        Other proteins in same PDB: d1glbf_
        complexed with adp, gol
      2. 2122827Domain d1glbg2: 1glb G:254-499 [33518]
        Other proteins in same PDB: d1glbf_
        complexed with adp, gol
    7. Domains for 1glc:
      1. 2122828Domain d1glcg1: 1glc G:4-253 [33519]
        Other proteins in same PDB: d1glcf_
        complexed with adp, g3h, mg, zn
      2. 2122829Domain d1glcg2: 1glc G:254-499 [33520]
        Other proteins in same PDB: d1glcf_
        complexed with adp, g3h, mg, zn
    8. Domains for 1gld:
      1. 2122830Domain d1gldg1: 1gld G:4-253 [33521]
        Other proteins in same PDB: d1gldf_
        complexed with adp, g3h, mn
      2. 2122831Domain d1gldg2: 1gld G:254-499 [33522]
        Other proteins in same PDB: d1gldf_
        complexed with adp, g3h, mn
    9. Domains for 1gle:
      1. 2122832Domain d1gleg1: 1gle G:4-253 [33523]
        Other proteins in same PDB: d1glef_
        complexed with adp, g3h, zn
      2. 2122833Domain d1gleg2: 1gle G:254-499 [33524]
        Other proteins in same PDB: d1glef_
        complexed with adp, g3h, zn
    10. Domains for 1glf:
      1. 2122818Domain d1glfo1: 1glf O:2-253 [33509]
        complexed with adp, gol, po4; mutant
      2. 2122819Domain d1glfo2: 1glf O:254-499 [33510]
        complexed with adp, gol, po4; mutant
      3. 2122820Domain d1glfx1: 1glf X:3-253 [33511]
        complexed with adp, gol, po4; mutant
      4. 2122821Domain d1glfx2: 1glf X:254-500 [33512]
        complexed with adp, gol, po4; mutant
      5. 2122822Domain d1glfy1: 1glf Y:2-253 [33513]
        complexed with adp, gol, po4; mutant
      6. 2122823Domain d1glfy2: 1glf Y:254-500 [33514]
        complexed with adp, gol, po4; mutant
      7. 2122824Domain d1glfz1: 1glf Z:3-253 [33515]
        complexed with adp, gol, po4; mutant
      8. 2122825Domain d1glfz2: 1glf Z:254-500 [33516]
        complexed with adp, gol, po4; mutant
    11. Domains for 1glj:
      1. 2122834Domain d1gljo1: 1glj O:2-253 [33525]
        complexed with ats, gol, mg; mutant
      2. 2122835Domain d1gljo2: 1glj O:254-499 [33526]
        complexed with ats, gol, mg; mutant
      3. 2122836Domain d1gljy1: 1glj Y:2-253 [33527]
        complexed with ats, gol, mg; mutant
      4. 2122837Domain d1gljy2: 1glj Y:254-499 [33528]
        complexed with ats, gol, mg; mutant
    12. Domains for 1gll:
      1. 2122842Domain d1gllo1: 1gll O:2-253 [33533]
        complexed with acp, gol, mg; mutant
      2. 2122843Domain d1gllo2: 1gll O:254-499 [33534]
        complexed with acp, gol, mg; mutant
      3. 2122844Domain d1glly1: 1gll Y:2-253 [33535]
        complexed with acp, gol, mg; mutant
      4. 2122845Domain d1glly2: 1gll Y:254-499 [33536]
        complexed with acp, gol, mg; mutant
    13. Domains for 2p3r:
      1. 2122796Domain d2p3ra3: 2p3r A:2-253 [304312]
        Other proteins in same PDB: d2p3rb5, d2p3rg5
        automated match to d1glfo1
        complexed with gol; mutant
      2. 2122797Domain d2p3ra4: 2p3r A:254-500 [304313]
        Other proteins in same PDB: d2p3rb5, d2p3rg5
        automated match to d3ezwe2
        complexed with gol; mutant
      3. 2122798Domain d2p3rb3: 2p3r B:2-253 [304314]
        Other proteins in same PDB: d2p3rb5, d2p3rg5
        automated match to d1glfo1
        complexed with gol; mutant
      4. 2122799Domain d2p3rb4: 2p3r B:254-500 [304315]
        Other proteins in same PDB: d2p3rb5, d2p3rg5
        automated match to d3ezwe2
        complexed with gol; mutant
      5. 2122800Domain d2p3rc3: 2p3r C:2-253 [304317]
        Other proteins in same PDB: d2p3rb5, d2p3rg5
        automated match to d1glfo1
        complexed with gol; mutant
      6. 2122801Domain d2p3rc4: 2p3r C:254-500 [304318]
        Other proteins in same PDB: d2p3rb5, d2p3rg5
        automated match to d3ezwe2
        complexed with gol; mutant
      7. 2122802Domain d2p3rd3: 2p3r D:2-253 [304319]
        Other proteins in same PDB: d2p3rb5, d2p3rg5
        automated match to d1glfo1
        complexed with gol; mutant
      8. 2122803Domain d2p3rd4: 2p3r D:254-500 [304320]
        Other proteins in same PDB: d2p3rb5, d2p3rg5
        automated match to d3ezwe2
        complexed with gol; mutant
      9. 2122804Domain d2p3re3: 2p3r E:2-253 [304321]
        Other proteins in same PDB: d2p3rb5, d2p3rg5
        automated match to d1glfo1
        complexed with gol; mutant
      10. 2122805Domain d2p3re4: 2p3r E:254-500 [304322]
        Other proteins in same PDB: d2p3rb5, d2p3rg5
        automated match to d3ezwe2
        complexed with gol; mutant
      11. 2122806Domain d2p3rg3: 2p3r G:2-253 [304323]
        Other proteins in same PDB: d2p3rb5, d2p3rg5
        automated match to d1glfo1
        complexed with gol; mutant
      12. 2122807Domain d2p3rg4: 2p3r G:254-500 [304324]
        Other proteins in same PDB: d2p3rb5, d2p3rg5
        automated match to d3ezwe2
        complexed with gol; mutant
    14. Domains for 3ezw:
      1. 2122780Domain d3ezwa1: 3ezw A:3-253 [175346]
        automated match to d1glfo1
        complexed with cl, edo, gol, mg; mutant
      2. 2122781Domain d3ezwa2: 3ezw A:254-500 [175347]
        automated match to d3ezwd2
        complexed with cl, edo, gol, mg; mutant
      3. 2122782Domain d3ezwb1: 3ezw B:1-253 [175348]
        automated match to d1glfo1
        complexed with cl, edo, gol, mg; mutant
      4. 2122783Domain d3ezwb2: 3ezw B:254-500 [175349]
        automated match to d3ezwd2
        complexed with cl, edo, gol, mg; mutant
      5. 2122784Domain d3ezwc1: 3ezw C:2-253 [175350]
        automated match to d1glfo1
        complexed with cl, edo, gol, mg; mutant
      6. 2122785Domain d3ezwc2: 3ezw C:254-500 [175351]
        automated match to d3ezwd2
        complexed with cl, edo, gol, mg; mutant
      7. 2122786Domain d3ezwd1: 3ezw D:2-253 [175352]
        automated match to d1glfo1
        complexed with cl, edo, gol, mg; mutant
      8. 2122787Domain d3ezwd2: 3ezw D:254-500 [175353]
        automated match to d3ezwd2
        complexed with cl, edo, gol, mg; mutant
      9. 2122788Domain d3ezwe1: 3ezw E:1-253 [175354]
        automated match to d1glfo1
        complexed with cl, edo, gol, mg; mutant
      10. 2122789Domain d3ezwe2: 3ezw E:254-499 [175355]
        automated match to d3ezwd2
        complexed with cl, edo, gol, mg; mutant
      11. 2122790Domain d3ezwf1: 3ezw F:2-253 [175356]
        automated match to d1glfo1
        complexed with cl, edo, gol, mg; mutant
      12. 2122791Domain d3ezwf2: 3ezw F:254-499 [175357]
        automated match to d3ezwd2
        complexed with cl, edo, gol, mg; mutant
      13. 2122792Domain d3ezwg1: 3ezw G:1-253 [175358]
        automated match to d1glfo1
        complexed with cl, edo, gol, mg; mutant
      14. 2122793Domain d3ezwg2: 3ezw G:254-498 [175359]
        automated match to d3ezwd2
        complexed with cl, edo, gol, mg; mutant
      15. 2122794Domain d3ezwh1: 3ezw H:2-253 [175360]
        automated match to d1glfo1
        complexed with cl, edo, gol, mg; mutant
      16. 2122795Domain d3ezwh2: 3ezw H:254-499 [175361]
        automated match to d3ezwd2
        complexed with cl, edo, gol, mg; mutant

More info for Protein Glycerol kinase from c.55.1.4: Glycerol kinase

Timeline for Protein Glycerol kinase from c.55.1.4: Glycerol kinase: