PDB entry 3ezw

View 3ezw on RCSB PDB site
Description: Crystal Structure of a Hyperactive Escherichia coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices
Class: transferase
Keywords: GLYCEROL KINASE, GLYCEROL METABOLISM, ALLOSTERIC REGULATION, MICROFLUIDICS, IN SITU DATA COLLECTION, ATP-binding, Kinase, Metal-binding, Nucleotide-binding, Transferase
Deposited on 2008-10-23, released 2008-11-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycerol kinase
    Species: Escherichia coli [TaxId:83333]
    Gene: b3926, glpK, JW3897
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6F3 (Start-499)
      • engineered (229)
    Domains in SCOPe 2.08: d3ezwa1, d3ezwa2
  • Chain 'B':
    Compound: glycerol kinase
    Species: Escherichia coli [TaxId:83333]
    Gene: b3926, glpK, JW3897
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ezwb1, d3ezwb2
  • Chain 'C':
    Compound: glycerol kinase
    Species: Escherichia coli [TaxId:83333]
    Gene: b3926, glpK, JW3897
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ezwc1, d3ezwc2
  • Chain 'D':
    Compound: glycerol kinase
    Species: Escherichia coli [TaxId:83333]
    Gene: b3926, glpK, JW3897
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ezwd1, d3ezwd2
  • Chain 'E':
    Compound: glycerol kinase
    Species: Escherichia coli [TaxId:83333]
    Gene: b3926, glpK, JW3897
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ezwe1, d3ezwe2
  • Chain 'F':
    Compound: glycerol kinase
    Species: Escherichia coli [TaxId:83333]
    Gene: b3926, glpK, JW3897
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ezwf1, d3ezwf2
  • Chain 'G':
    Compound: glycerol kinase
    Species: Escherichia coli [TaxId:83333]
    Gene: b3926, glpK, JW3897
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6F3 (0-End)
      • engineered (229)
    Domains in SCOPe 2.08: d3ezwg1, d3ezwg2
  • Chain 'H':
    Compound: glycerol kinase
    Species: Escherichia coli [TaxId:83333]
    Gene: b3926, glpK, JW3897
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ezwh1, d3ezwh2
  • Heterogens: GOL, CL, MG, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ezwA (A:)
    tekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstl
    vevlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgl
    edyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhv
    tdytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtnidgkggtripis
    giagdqqaalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevny
    alegavfmagasiqwlrdemklindaydseyfatkvqntngvyvvpaftglgapywdpya
    rgaifgltrgvnanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmq
    fqsdilgtrverpevrevtalgaaylaglavgfwqnldelqekavierefrpgiettern
    yryagwkkavkramaweehdqlytrasqpelapedpedlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ezwA (A:)
    kkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstlve
    vlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgled
    yirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhvtd
    ytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtnidgkggtripisgi
    agdqqaalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevnyal
    egavfmagasiqwlrdemklindaydseyfatkvqntngvyvvpaftglgapywdpyarg
    aifgltrgvnanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmqfq
    sdilgtrverpevrevtalgaaylaglavgfwqnldelqekavierefrpgietternyr
    yagwkkavkramaweehd
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3ezwB (B:)
    tekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstl
    vevlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgl
    edyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhv
    tdytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtnidgkggtripis
    giagdqqaalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevny
    alegavfmagasiqwlrdemklindaydseyfatkvqntngvyvvpaftglgapywdpya
    rgaifgltrgvnanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmq
    fqsdilgtrverpevrevtalgaaylaglavgfwqnldelqekavierefrpgiettern
    yryagwkkavkramaweehdqlytrasqpelapedpedlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ezwB (B:)
    tekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstl
    vevlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgl
    edyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhv
    tdytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtnigtripisgiag
    dqqaalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevnyaleg
    avfmagasiqwlrdemklindaydseyfatkvqntngvyvvpaftglgapywdpyargai
    fgltrgvnanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmqfqsd
    ilgtrverpevrevtalgaaylaglavgfwqnldelqekavierefrpgietternyrya
    gwkkavkramaweehd
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3ezwC (C:)
    tekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstl
    vevlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgl
    edyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhv
    tdytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtnidgkggtripis
    giagdqqaalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevny
    alegavfmagasiqwlrdemklindaydseyfatkvqntngvyvvpaftglgapywdpya
    rgaifgltrgvnanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmq
    fqsdilgtrverpevrevtalgaaylaglavgfwqnldelqekavierefrpgiettern
    yryagwkkavkramaweehdqlytrasqpelapedpedlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ezwC (C:)
    ekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstlv
    evlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgle
    dyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhvt
    dytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtntripisgiagdqq
    aalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevnyalegavf
    magasiqwlrdemklidseyfatkvqntngvyvvpaftglgapywdpyargaifgltrgv
    nanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmqfqsdilgtrve
    rpevrevtalgaaylaglavgfwqnldelqekavierefrpgietternyryagwkkavk
    ramaweehd
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3ezwD (D:)
    tekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstl
    vevlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgl
    edyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhv
    tdytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtnidgkggtripis
    giagdqqaalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevny
    alegavfmagasiqwlrdemklindaydseyfatkvqntngvyvvpaftglgapywdpya
    rgaifgltrgvnanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmq
    fqsdilgtrverpevrevtalgaaylaglavgfwqnldelqekavierefrpgiettern
    yryagwkkavkramaweehdqlytrasqpelapedpedlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ezwD (D:)
    ekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstlv
    evlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgle
    dyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhvt
    dytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtnripisgiagdqqa
    alfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevnyalegavfm
    agasiqwlrdemklidseyfatkvqntngvyvvpaftglgapywdpyargaifgltrgvn
    anhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmqfqsdilgtrver
    pevtalgaaylaglavgfwqnldelqeierefrpgietternyryagwkkavkramawee
    hd
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3ezwE (E:)
    tekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstl
    vevlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgl
    edyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhv
    tdytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtnidgkggtripis
    giagdqqaalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevny
    alegavfmagasiqwlrdemklindaydseyfatkvqntngvyvvpaftglgapywdpya
    rgaifgltrgvnanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmq
    fqsdilgtrverpevrevtalgaaylaglavgfwqnldelqekavierefrpgiettern
    yryagwkkavkramaweehdqlytrasqpelapedpedlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ezwE (E:)
    tekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstl
    vevlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgl
    edyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhv
    tdytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtnripisgiagdqq
    aalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevnyalegavf
    magasiqwlrdemklindaydseyfatkvqntngvyvvpaftglgapywdpyargaifgl
    trgvnanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmqfqsdilg
    trverpevrevtalgaaylaglavgfwqnldelqekavierefrpgietternyryagwk
    kavkramaweeh
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3ezwF (F:)
    tekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstl
    vevlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgl
    edyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhv
    tdytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtnidgkggtripis
    giagdqqaalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevny
    alegavfmagasiqwlrdemklindaydseyfatkvqntngvyvvpaftglgapywdpya
    rgaifgltrgvnanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmq
    fqsdilgtrverpevrevtalgaaylaglavgfwqnldelqekavierefrpgiettern
    yryagwkkavkramaweehdqlytrasqpelapedpedlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ezwF (F:)
    ekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstlv
    evlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgle
    dyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhvt
    dytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtntripisgiagdqq
    aalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevnyalegavf
    magasiqwlrdemklindaydseyfatkvqntngvyvvpaftglgapywdpyargaifgl
    trgvnanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmqfqsdilg
    trverpevrevtalgaaylaglavgfwqnldelqekavierefrpgietternyryagwk
    kavkramaweeh
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3ezwG (G:)
    tekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstl
    vevlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgl
    edyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhv
    tdytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtnidgkggtripis
    giagdqqaalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevny
    alegavfmagasiqwlrdemklindaydseyfatkvqntngvyvvpaftglgapywdpya
    rgaifgltrgvnanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmq
    fqsdilgtrverpevrevtalgaaylaglavgfwqnldelqekavierefrpgiettern
    yryagwkkavkramaweehdqlytrasqpelapedpedlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ezwG (G:)
    tekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstl
    vevlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgl
    edyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhv
    tdytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtnidgkggtripis
    giagdqqaalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevny
    alegavfmagasiqwlrdemklindaydseyfatkvqntngvyvvpaftglgapywdpya
    rgaifgltrgvnanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmq
    fqsdilgtrverpevrevtalgaaylaglavgfwqnldelqekavierefrpgiettern
    yryagwkkavkramawee
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3ezwH (H:)
    tekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstl
    vevlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgl
    edyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhv
    tdytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtnidgkggtripis
    giagdqqaalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevny
    alegavfmagasiqwlrdemklindaydseyfatkvqntngvyvvpaftglgapywdpya
    rgaifgltrgvnanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmq
    fqsdilgtrverpevrevtalgaaylaglavgfwqnldelqekavierefrpgiettern
    yryagwkkavkramaweehdqlytrasqpelapedpedlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ezwH (H:)
    ekkyivaldqgttssravvmdhdaniisvsqrefeqiypkpgwvehdpmeiwatqsstlv
    evlakadissdqiaaigitnqrettivweketgkpiynaivwqcrrtaeicehlkrdgle
    dyirsntglvidpyfsgtkvkwildhvegsrerarrgellfgtvdtwliwkmtqgrvhvt
    dytnasrtmlfnihtldwddkmlevldipremlpevrrssevygqtniripisgiagdqq
    aalfgqlcvkegmakntygtgcfmlmntgekavksengllttiacgptgevnyalegavf
    magasiqwlrdemklindaydseyfatkvqntngvyvvpaftglgapywdpyargaifgl
    trgvnanhiiratlesiayqtrdvleamqadsgirlhalrvdggavannflmqfqsdilg
    trverpevrevtalgaaylaglavgfwqnldelqekavierefrpgietternyryagwk
    kavkramaweeh