SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1991985Fold a.28: Acyl carrier protein-like [47335] (3 superfamilies)
    4 helices, bundle; helix 3 is shorter than others; up-and-down
  4. 1991986Superfamily a.28.1: ACP-like [47336] (4 families) (S)
  5. 1992102Family a.28.1.0: automated matches [191582] (1 protein)
    not a true family
  6. 1992103Protein automated matches [191038] (19 species)
    not a true protein

Species:

  1. 1992104Actinoplanes teichomyceticus [TaxId:1867] [268016] (2 PDB entries)
    1. Domain for 2mr7:
    2. Domain for 2mr8:
  2. 1992107Anaplasma phagocytophilum [TaxId:212042] [267793] (1 PDB entry)
  3. 1992109Bacillus subtilis [TaxId:1423] [256569] (3 PDB entries)
    1. Domain for 4bpf:
    2. Domains for 4bpg:
      1. 1992112Domain d4bpga1: 4bpg A:1-78 [256571]
        Other proteins in same PDB: d4bpga2, d4bpgb2
        automated match to d1hqba_
      2. 1992113Domain d4bpgb1: 4bpg B:1-78 [262532]
        Other proteins in same PDB: d4bpga2, d4bpgb2
        automated match to d4bpfa_
    3. Domain for 4bph:
  4. 1992114Brucella melitensis [TaxId:520466] [255402] (1 PDB entry)
  5. 1992116Enterococcus faecalis [TaxId:226185] [279836] (1 PDB entry)
  6. 1992118Human (Homo sapiens) [TaxId:9606] [255120] (1 PDB entry)
  7. 1992120Leishmania major [TaxId:5664] [259666] (1 PDB entry)
  8. 1992122Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [255384] (1 PDB entry)
  9. 1992124Malaria parasite (Plasmodium falciparum) [TaxId:5833] [188862] (2 PDB entries)
    1. Domain for 3gzl:
    2. Domains for 3gzm:
      1. 1992125Domain d3gzma_: 3gzm A: [177112]
        automated match to d1acpa_
        complexed with bme, mli, pns
      2. 1992126Domain d3gzmb_: 3gzm B: [177113]
        automated match to d1acpa_
        complexed with bme, mli, pns
  10. 1992128Mycobacterium tuberculosis [TaxId:83332] [255086] (1 PDB entry)
  11. 1992130Plasmodium falciparum [TaxId:36329] [255175] (2 PDB entries)
    1. Domain for 2fq0:
    2. Domain for 2fq2:
  12. 1992133Rickettsia prowazekii [TaxId:272947] [255452] (1 PDB entry)
  13. 1992135Spinach (Spinacia oleracea) [TaxId:3562] [255038] (5 PDB entries)
    1. Domain for 2ava:
    2. Domain for 2fva:
    3. Domain for 2fve:
    4. Domain for 2fvf:
    5. Domain for 2xz0:
  14. 1992141Staphylococcus aureus [TaxId:93062] [256240] (1 PDB entry)
  15. 1992148Streptomyces coelicolor [TaxId:100226] [255091] (1 PDB entry)
  16. 1992150Streptomyces coelicolor [TaxId:1902] [255367] (5 PDB entries)
    1. Domain for 2koo:
    2. Domain for 2kop:
    3. Domain for 2koq:
    4. Domain for 2kor:
    5. Domain for 2kos:
  17. 1992156Streptomyces sp. [TaxId:1001349] [258245] (2 PDB entries)
    1. Domain for 4pwv:
    2. Domains for 4pxh:
      1. 1992157Domain d4pxhb_: 4pxh B: [258778]
        Other proteins in same PDB: d4pxha_, d4pxhc_, d4pxhe_
        automated match to d1dnya_
        complexed with hem, kh4
      2. 1992158Domain d4pxhd_: 4pxh D: [258777]
        Other proteins in same PDB: d4pxha_, d4pxhc_, d4pxhe_
        automated match to d1dnya_
        complexed with hem, kh4
      3. 1992159Domain d4pxhf_: 4pxh F: [259097]
        Other proteins in same PDB: d4pxha_, d4pxhc_, d4pxhe_
        automated match to d1dnya_
        complexed with hem, kh4
  18. 2281471Helicobacter pylori [TaxId:210] [324772] (1 PDB entry)
  19. 2284270Helicobacter pylori [TaxId:570508] [327571] (2 PDB entries)
    1. Domains for 5h9g:
      1. 2284273Domain d5h9ga1: 5h9g A:1-76 [327574]
        Other proteins in same PDB: d5h9ga2, d5h9gb2
        automated match to d3gzmb_
      2. 2284287Domain d5h9gb1: 5h9g B:1-75 [327588]
        Other proteins in same PDB: d5h9ga2, d5h9gb2
        automated match to d3gzmb_
    2. Domains for 5h9h:
      1. 2284271Domain d5h9hb_: 5h9h B: [327572]
        automated match to d3gzmb_
      2. 2284272Domain d5h9hc_: 5h9h C: [327573]
        automated match to d3gzmb_
      3. 2284331Domain d5h9ha_: 5h9h A: [327632]
        automated match to d3gzmb_

More info for Protein automated matches from a.28.1.0: automated matches

Timeline for Protein automated matches from a.28.1.0: automated matches: