SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Helicobacter pylori [TaxId: 570508]

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1991985Fold a.28: Acyl carrier protein-like [47335] (3 superfamilies)
    4 helices, bundle; helix 3 is shorter than others; up-and-down
  4. 1991986Superfamily a.28.1: ACP-like [47336] (4 families) (S)
  5. 1992102Family a.28.1.0: automated matches [191582] (1 protein)
    not a true family
  6. 1992103Protein automated matches [191038] (19 species)
    not a true protein
  7. 2284270Species Helicobacter pylori [TaxId:570508] [327571] (2 PDB entries)

PDB entries in Species: Helicobacter pylori [TaxId: 570508]:

  1. Domain(s) for 5h9g:
    1. 2284273Domain d5h9ga1: 5h9g A:1-76 [327574]
      Other proteins in same PDB: d5h9ga2, d5h9gb2
      automated match to d3gzmb_
    2. 2284287Domain d5h9gb1: 5h9g B:1-75 [327588]
      Other proteins in same PDB: d5h9ga2, d5h9gb2
      automated match to d3gzmb_
  2. Domain(s) for 5h9h:
    1. 2284271Domain d5h9hb_: 5h9h B: [327572]
      automated match to d3gzmb_
    2. 2284272Domain d5h9hc_: 5h9h C: [327573]
      automated match to d3gzmb_
    3. 2284331Domain d5h9ha_: 5h9h A: [327632]
      automated match to d3gzmb_

More info for Species Helicobacter pylori [TaxId:570508] from a.28.1.0 automated matches

Timeline for Species Helicobacter pylori [TaxId:570508] from a.28.1.0 automated matches:

  • Species Helicobacter pylori [TaxId:570508] from a.28.1.0 automated matches appears in periodic updates to SCOPe 2.06 starting on 2016-12-28