Lineage for Protein: Nitrogenase iron-molybdenum protein, beta chain

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2143226Fold c.92: Chelatase-like [53799] (3 superfamilies)
    duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134
  4. 2143333Superfamily c.92.2: "Helical backbone" metal receptor [53807] (5 families) (S)
    contains a long alpha helical insertion in the interdomain linker
  5. 2143391Family c.92.2.3: Nitrogenase iron-molybdenum protein [53816] (3 protein domains)
    contains three domains of this fold; "Helical backbone" holds domains 2 and 3
    both chains are homologous; the inter-chain arrangement of domains 1 is similar to the intra-chain arrangement of domains 2 and 3
    automatically mapped to Pfam PF00148
  6. 2143437Protein Nitrogenase iron-molybdenum protein, beta chain [81401] (3 species)
    both chains are homologous; the inter-chain arrangement of domains 1 is similar to the intra-chain arrangement of domains 2 and 3

Species:

  1. 2143438Azotobacter vinelandii [TaxId:354] [81397] (23 PDB entries)
    1. Domains for 1fp4:
      1. 2143467Domain d1fp4b_: 1fp4 B: [76188]
        Other proteins in same PDB: d1fp4a_, d1fp4c_
        complexed with ca, cfm, clp, hca; mutant
      2. 2143468Domain d1fp4d_: 1fp4 D: [76190]
        Other proteins in same PDB: d1fp4a_, d1fp4c_
        complexed with ca, cfm, clp, hca; mutant
    2. Domains for 1g20:
      1. 2143461Domain d1g20b_: 1g20 B: [35614]
        Other proteins in same PDB: d1g20a_, d1g20c_, d1g20e_, d1g20f_, d1g20g_, d1g20h_
        complexed with ca, cfm, clf, hca, sf4
      2. 2143462Domain d1g20d_: 1g20 D: [35616]
        Other proteins in same PDB: d1g20a_, d1g20c_, d1g20e_, d1g20f_, d1g20g_, d1g20h_
        complexed with ca, cfm, clf, hca, sf4
    3. Domains for 1g21:
      1. 2143480Domain d1g21b_: 1g21 B: [35622]
        Other proteins in same PDB: d1g21a_, d1g21c_, d1g21e_, d1g21f_, d1g21g_, d1g21h_
        complexed with atp, ca, cfm, clf, hca, mg, sf4
      2. 2143481Domain d1g21d_: 1g21 D: [35624]
        Other proteins in same PDB: d1g21a_, d1g21c_, d1g21e_, d1g21f_, d1g21g_, d1g21h_
        complexed with atp, ca, cfm, clf, hca, mg, sf4
    4. Domain for 1l5h:
      • 2143473Domain d1l5hb_: 1l5h B: [73591]
        Other proteins in same PDB: d1l5ha_
        FeMo-cofactor deficient
        complexed with ca, clf
    5. Domains for 1m1n:
      1. 2143441Domain d1m1nb_: 1m1n B: [78418]
        Other proteins in same PDB: d1m1na_, d1m1nc_, d1m1ne_, d1m1ng_
        complexed with ca, cfn, clf, hca
      2. 2143442Domain d1m1nd_: 1m1n D: [78420]
        Other proteins in same PDB: d1m1na_, d1m1nc_, d1m1ne_, d1m1ng_
        complexed with ca, cfn, clf, hca
      3. 2143443Domain d1m1nf_: 1m1n F: [78422]
        Other proteins in same PDB: d1m1na_, d1m1nc_, d1m1ne_, d1m1ng_
        complexed with ca, cfn, clf, hca
      4. 2143444Domain d1m1nh_: 1m1n H: [78424]
        Other proteins in same PDB: d1m1na_, d1m1nc_, d1m1ne_, d1m1ng_
        complexed with ca, cfn, clf, hca
    6. Domains for 1m1y:
      1. 2143482Domain d1m1yb_: 1m1y B: [78442]
        Other proteins in same PDB: d1m1ya_, d1m1yc_, d1m1ye_, d1m1yf_, d1m1yg_, d1m1yh_, d1m1yi_, d1m1yk_, d1m1ym_, d1m1yn_, d1m1yo_, d1m1yp_
        chemically crosslinked structure
        complexed with ca, cfm, clf, hca, sf4
      2. 2143483Domain d1m1yd_: 1m1y D: [78444]
        Other proteins in same PDB: d1m1ya_, d1m1yc_, d1m1ye_, d1m1yf_, d1m1yg_, d1m1yh_, d1m1yi_, d1m1yk_, d1m1ym_, d1m1yn_, d1m1yo_, d1m1yp_
        chemically crosslinked structure
        complexed with ca, cfm, clf, hca, sf4
      3. 2143484Domain d1m1yj_: 1m1y J: [78450]
        Other proteins in same PDB: d1m1ya_, d1m1yc_, d1m1ye_, d1m1yf_, d1m1yg_, d1m1yh_, d1m1yi_, d1m1yk_, d1m1ym_, d1m1yn_, d1m1yo_, d1m1yp_
        chemically crosslinked structure
        complexed with ca, cfm, clf, hca, sf4
      4. 2143485Domain d1m1yl_: 1m1y L: [78452]
        Other proteins in same PDB: d1m1ya_, d1m1yc_, d1m1ye_, d1m1yf_, d1m1yg_, d1m1yh_, d1m1yi_, d1m1yk_, d1m1ym_, d1m1yn_, d1m1yo_, d1m1yp_
        chemically crosslinked structure
        complexed with ca, cfm, clf, hca, sf4
    7. Domains for 1m34:
      1. 2143463Domain d1m34b_: 1m34 B: [78516]
        Other proteins in same PDB: d1m34a_, d1m34c_, d1m34e_, d1m34f_, d1m34g_, d1m34h_, d1m34i_, d1m34k_, d1m34m_, d1m34n_, d1m34o_, d1m34p_
        complexed with adp, alf, ca, cfm, clf, hca, mg, sf4
      2. 2143464Domain d1m34d_: 1m34 D: [78518]
        Other proteins in same PDB: d1m34a_, d1m34c_, d1m34e_, d1m34f_, d1m34g_, d1m34h_, d1m34i_, d1m34k_, d1m34m_, d1m34n_, d1m34o_, d1m34p_
        complexed with adp, alf, ca, cfm, clf, hca, mg, sf4
      3. 2143465Domain d1m34j_: 1m34 J: [78524]
        Other proteins in same PDB: d1m34a_, d1m34c_, d1m34e_, d1m34f_, d1m34g_, d1m34h_, d1m34i_, d1m34k_, d1m34m_, d1m34n_, d1m34o_, d1m34p_
        complexed with adp, alf, ca, cfm, clf, hca, mg, sf4
      4. 2143466Domain d1m34l_: 1m34 L: [78526]
        Other proteins in same PDB: d1m34a_, d1m34c_, d1m34e_, d1m34f_, d1m34g_, d1m34h_, d1m34i_, d1m34k_, d1m34m_, d1m34n_, d1m34o_, d1m34p_
        complexed with adp, alf, ca, cfm, clf, hca, mg, sf4
    8. Domains for 1n2c:
      1. 2143478Domain d1n2cb_: 1n2c B: [35618]
        Other proteins in same PDB: d1n2ca_, d1n2cc_, d1n2ce_, d1n2cf_, d1n2cg_, d1n2ch_
        complexed with adp, alf, ca, cfm, clf, hca, mg, sf4
      2. 2143479Domain d1n2cd_: 1n2c D: [35620]
        Other proteins in same PDB: d1n2ca_, d1n2cc_, d1n2ce_, d1n2cf_, d1n2cg_, d1n2ch_
        complexed with adp, alf, ca, cfm, clf, hca, mg, sf4
    9. Domains for 2afh:
      1. 2143451Domain d2afhb_: 2afh B: [126680]
        Other proteins in same PDB: d2afha_, d2afhc_, d2afhe_, d2afhf_
        automated match to d1fp4b_
        complexed with 1pe, ca, cfn, clf, hca, na, p6g, peg, pg4, pge, sf4, trs
      2. 2143452Domain d2afhd_: 2afh D: [126682]
        Other proteins in same PDB: d2afha_, d2afhc_, d2afhe_, d2afhf_
        automated match to d1fp4b_
        complexed with 1pe, ca, cfn, clf, hca, na, p6g, peg, pg4, pge, sf4, trs
    10. Domains for 2afk:
      1. 2143476Domain d2afkb_: 2afk B: [126695]
        Other proteins in same PDB: d2afka_, d2afkc_, d2afke_, d2afkf_, d2afkg_, d2afkh_
        automated match to d1fp4b_
        complexed with acp, ca, cfn, clf, hca, mg, sf4
      2. 2143477Domain d2afkd_: 2afk D: [126697]
        Other proteins in same PDB: d2afka_, d2afkc_, d2afke_, d2afkf_, d2afkg_, d2afkh_
        automated match to d1fp4b_
        complexed with acp, ca, cfn, clf, hca, mg, sf4
    11. Domains for 2min:
      1. 2143457Domain d2minb_: 2min B: [35610]
        Other proteins in same PDB: d2mina_, d2minc_
        complexed with ca, cfm, clf, hca
      2. 2143458Domain d2mind_: 2min D: [35612]
        Other proteins in same PDB: d2mina_, d2minc_
        complexed with ca, cfm, clf, hca
    12. Domains for 3k1a:
      1. 2143459Domain d3k1ab_: 3k1a B: [178944]
        Other proteins in same PDB: d3k1aa_, d3k1ac_
        automated match to d1fp4b_
        complexed with ca, cfn, clf, hca
      2. 2143460Domain d3k1ad_: 3k1a D: [178946]
        Other proteins in same PDB: d3k1aa_, d3k1ac_
        automated match to d1fp4b_
        complexed with ca, cfn, clf, hca
    13. Domains for 3min:
      1. 2143453Domain d3minb_: 3min B: [35606]
        Other proteins in same PDB: d3mina_, d3minc_
        complexed with ca, cfm, clf, hca
      2. 2143454Domain d3mind_: 3min D: [35608]
        Other proteins in same PDB: d3mina_, d3minc_
        complexed with ca, cfm, clf, hca
    14. Domains for 3u7q:
      1. 2143439Domain d3u7qb_: 3u7q B: [186100]
        Other proteins in same PDB: d3u7qa_, d3u7qc_
        automated match to d1fp4b_
        complexed with 1cl, ca, clf, hca, ics, imd, mg
      2. 2143440Domain d3u7qd_: 3u7q D: [186102]
        Other proteins in same PDB: d3u7qa_, d3u7qc_
        automated match to d1fp4b_
        complexed with 1cl, ca, clf, hca, ics, imd, mg
    15. Domains for 4nd8:
      1. 2143455Domain d4nd8b_: 4nd8 B: [236072]
        Other proteins in same PDB: d4nd8a_, d4nd8c_
        automated match to d1g20b_
        complexed with 1cl, fe, hca, ics
      2. 2143456Domain d4nd8d_: 4nd8 D: [236073]
        Other proteins in same PDB: d4nd8a_, d4nd8c_
        automated match to d1g20b_
        complexed with 1cl, fe, hca, ics
    16. Domains for 4tku:
      1. 2143445Domain d4tkub_: 4tku B: [260023]
        Other proteins in same PDB: d4tkua_, d4tkuc_
        automated match to d1g20b_
        complexed with cl, clf, fe2, hca, ics, imd
      2. 2143446Domain d4tkud_: 4tku D: [260024]
        Other proteins in same PDB: d4tkua_, d4tkuc_
        automated match to d1g20b_
        complexed with cl, clf, fe2, hca, ics, imd
    17. Domains for 4tkv:
      1. 2143447Domain d4tkvb_: 4tkv B: [260026]
        Other proteins in same PDB: d4tkva_, d4tkvc_
        automated match to d1g20b_
        complexed with clf, cmo, fe2, hca, ice, imd
      2. 2143448Domain d4tkvd_: 4tkv D: [260025]
        Other proteins in same PDB: d4tkva_, d4tkvc_
        automated match to d1g20b_
        complexed with clf, cmo, fe2, hca, ice, imd
    18. Domains for 4wna:
      1. 2143471Domain d4wnab_: 4wna B: [270772]
        Other proteins in same PDB: d4wnaa_, d4wnac_
        automated match to d1g20b_
        complexed with clf, fe, hca, ics, xe
      2. 2143472Domain d4wnad_: 4wna D: [270777]
        Other proteins in same PDB: d4wnaa_, d4wnac_
        automated match to d1g20b_
        complexed with clf, fe, hca, ics, xe
    19. Domains for 4wza:
      1. 2143449Domain d4wzab_: 4wza B: [269129]
        Other proteins in same PDB: d4wzaa_, d4wzac_, d4wzae_, d4wzaf_, d4wzag_, d4wzah_
        automated match to d1m1nb_
        complexed with acp, adp, clf, fe, hca, ics, mg, sf4
      2. 2143450Domain d4wzad_: 4wza D: [269125]
        Other proteins in same PDB: d4wzaa_, d4wzac_, d4wzae_, d4wzaf_, d4wzag_, d4wzah_
        automated match to d1m1nb_
        complexed with acp, adp, clf, fe, hca, ics, mg, sf4
    20. Domains for 4wzb:
      1. 2143474Domain d4wzbb_: 4wzb B: [269533]
        Other proteins in same PDB: d4wzba_, d4wzbc_, d4wzbe_, d4wzbf_, d4wzbg_, d4wzbh_
        automated match to d1m1nb_
        complexed with acp, clf, fe2, hca, ics, mg, sf4
      2. 2143475Domain d4wzbd_: 4wzb D: [269531]
        Other proteins in same PDB: d4wzba_, d4wzbc_, d4wzbe_, d4wzbf_, d4wzbg_, d4wzbh_
        automated match to d1m1nb_
        complexed with acp, clf, fe2, hca, ics, mg, sf4
    21. Domains for 4xpi:
      1. 2143469Domain d4xpib_: 4xpi B: [278200]
        Other proteins in same PDB: d4xpia_, d4xpic_
        automated match to d1qh8b_
        complexed with 1cl, ca, gol, hca, ics, trs
      2. 2143470Domain d4xpid_: 4xpi D: [278205]
        Other proteins in same PDB: d4xpia_, d4xpic_
        automated match to d1qh8b_
        complexed with 1cl, ca, gol, hca, ics, trs
    22. Domains for 5ijy:
      1. 2287406Domain d5ijyd_: 5ijy D: [330707]
        Other proteins in same PDB: d5ijya_, d5ijyc_
        automated match to d1g20b_
        complexed with clf, fe, hca, ics
      2. 2287459Domain d5ijyb_: 5ijy B: [330760]
        Other proteins in same PDB: d5ijya_, d5ijyc_
        automated match to d1g20b_
        complexed with clf, fe, hca, ics
    23. Domains for 5vq4:
      1. 2293813Domain d5vq4b_: 5vq4 B: [337114]
        Other proteins in same PDB: d5vq4a_, d5vq4c_
        automated match to d1g20b_
        complexed with clf, fe, hca, ics
      2. 2293845Domain d5vq4d_: 5vq4 D: [337146]
        Other proteins in same PDB: d5vq4a_, d5vq4c_
        automated match to d1g20b_
        complexed with clf, fe, hca, ics
  2. 2143486Clostridium pasteurianum [TaxId:1501] [81395] (5 PDB entries)
    1. Domains for 1mio:
      1. 2143491Domain d1miob_: 1mio B: [35602]
        Other proteins in same PDB: d1mioa_, d1mioc_
        complexed with ca, cfm, clp, hca
      2. 2143492Domain d1miod_: 1mio D: [35604]
        Other proteins in same PDB: d1mioa_, d1mioc_
        complexed with ca, cfm, clp, hca
    2. Domains for 4wes:
      1. 2143487Domain d4wesb_: 4wes B: [269445]
        Other proteins in same PDB: d4wesa_, d4wesc_
        automated match to d1miob_
        complexed with clf, fe2, hca, ics, mpd
      2. 2143488Domain d4wesd_: 4wes D: [269446]
        Other proteins in same PDB: d4wesa_, d4wesc_
        automated match to d1miob_
        complexed with clf, fe2, hca, ics, mpd
    3. Domains for 4wn9:
      1. 2143489Domain d4wn9b_: 4wn9 B: [270779]
        Other proteins in same PDB: d4wn9a_, d4wn9c_
        automated match to d1miob_
        complexed with clf, fe, hca, ics, pro, xe
      2. 2143490Domain d4wn9d_: 4wn9 D: [270780]
        Other proteins in same PDB: d4wn9a_, d4wn9c_
        automated match to d1miob_
        complexed with clf, fe, hca, ics, pro, xe
    4. Domains for 5vpw:
      1. 2293832Domain d5vpwb_: 5vpw B: [337133]
        Other proteins in same PDB: d5vpwa_, d5vpwc_
        automated match to d1miob_
        complexed with clf, fe2, hca, ics
      2. 2293839Domain d5vpwd_: 5vpw D: [337140]
        Other proteins in same PDB: d5vpwa_, d5vpwc_
        automated match to d1miob_
        complexed with clf, fe2, hca, ics
    5. Domains for 5vq3:
      1. 2293796Domain d5vq3d_: 5vq3 D: [337097]
        Other proteins in same PDB: d5vq3a_, d5vq3c_
        automated match to d1miob_
        complexed with clf, fe2, hca, ics
      2. 2293799Domain d5vq3b_: 5vq3 B: [337100]
        Other proteins in same PDB: d5vq3a_, d5vq3c_
        automated match to d1miob_
        complexed with clf, fe2, hca, ics
  3. 2143493Klebsiella pneumoniae [TaxId:573] [81399] (4 PDB entries)
    1. Domains for 1h1l:
      1. 2143500Domain d1h1lb_: 1h1l B: [70852]
        Other proteins in same PDB: d1h1la_, d1h1lc_
        complexed with cfm, cit, cl, clf, mg; mutant
      2. 2143501Domain d1h1ld_: 1h1l D: [70854]
        Other proteins in same PDB: d1h1la_, d1h1lc_
        complexed with cfm, cit, cl, clf, mg; mutant
    2. Domains for 1qgu:
      1. 2143496Domain d1qgub_: 1qgu B: [35626]
        Other proteins in same PDB: d1qgua_, d1qguc_
        complexed with cfm, cl, clf, edo, hca, mg
      2. 2143497Domain d1qgud_: 1qgu D: [35628]
        Other proteins in same PDB: d1qgua_, d1qguc_
        complexed with cfm, cl, clf, edo, hca, mg
    3. Domains for 1qh1:
      1. 2143498Domain d1qh1b_: 1qh1 B: [35630]
        Other proteins in same PDB: d1qh1a_, d1qh1c_
        complexed with cfm, cl, clf, edo, hca, mg
      2. 2143499Domain d1qh1d_: 1qh1 D: [35632]
        Other proteins in same PDB: d1qh1a_, d1qh1c_
        complexed with cfm, cl, clf, edo, hca, mg
    4. Domains for 1qh8:
      1. 2143494Domain d1qh8b_: 1qh8 B: [35634]
        Other proteins in same PDB: d1qh8a_, d1qh8c_
        complexed with cfm, cl, clf, edo, hca, mg
      2. 2143495Domain d1qh8d_: 1qh8 D: [35636]
        Other proteins in same PDB: d1qh8a_, d1qh8c_
        complexed with cfm, cl, clf, edo, hca, mg

More info for Protein Nitrogenase iron-molybdenum protein, beta chain from c.92.2.3: Nitrogenase iron-molybdenum protein

Timeline for Protein Nitrogenase iron-molybdenum protein, beta chain from c.92.2.3: Nitrogenase iron-molybdenum protein:

  • Protein Nitrogenase iron-molybdenum protein, beta chain from c.92.2.3: Nitrogenase iron-molybdenum protein first appeared in SCOP 1.63
  • Protein Nitrogenase iron-molybdenum protein, beta chain from c.92.2.3: Nitrogenase iron-molybdenum protein appears in SCOPe 2.05