SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.49: Pyruvate kinase C-terminal domain-like [52934] (2 superfamilies)
3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145, strand 5 is antiparallel to the rest
Superfamily c.49.2: ATP synthase (F1-ATPase), gamma subunit [52943] (2 families)
contains an antiparallel coiled coil formed by N- and C-terminal extensions to the common fold
Family c.49.2.0: automated matches [191450] (1 protein)
not a true family
Protein automated matches [190687] (6 species)
not a true protein

Species:

Bacillus sp. [TaxId:90973] [255563] (1 PDB entry)

Domain for 2qe7:

Domain d2qe7g_: 2qe7 G: [243554]
Other proteins in same PDB: d2qe7a1, d2qe7a2, d2qe7a3, d2qe7b1, d2qe7b2, d2qe7b3, d2qe7c1, d2qe7c2, d2qe7c3, d2qe7d1, d2qe7d2, d2qe7d3, d2qe7e1, d2qe7e2, d2qe7e3, d2qe7f1, d2qe7f2, d2qe7f3
automated match to d2v7qg_

Caldalkalibacillus thermarum [TaxId:986075] [322942] (2 PDB entries)

Domains for 5hkk:

Domain d5hkkg_: 5hkk G: [323065]
Other proteins in same PDB: d5hkka1, d5hkka2, d5hkka3, d5hkkb1, d5hkkb2, d5hkkb3, d5hkkc1, d5hkkc2, d5hkkc3, d5hkkd1, d5hkkd2, d5hkkd3, d5hkke1, d5hkke2, d5hkke3, d5hkkf1, d5hkkf2, d5hkkf3, d5hkki1, d5hkki2, d5hkki3, d5hkkj1, d5hkkj2, d5hkkj3, d5hkkk1, d5hkkk2, d5hkkk3, d5hkkl1, d5hkkl2, d5hkkl3, d5hkkm1, d5hkkm2, d5hkkm3, d5hkkn1, d5hkkn2, d5hkkn3
automated match to d2jdig_
complexed with adp, atp, gol, mg, po4

Domain d5hkko_: 5hkk O: [322943]
Other proteins in same PDB: d5hkka1, d5hkka2, d5hkka3, d5hkkb1, d5hkkb2, d5hkkb3, d5hkkc1, d5hkkc2, d5hkkc3, d5hkkd1, d5hkkd2, d5hkkd3, d5hkke1, d5hkke2, d5hkke3, d5hkkf1, d5hkkf2, d5hkkf3, d5hkki1, d5hkki2, d5hkki3, d5hkkj1, d5hkkj2, d5hkkj3, d5hkkk1, d5hkkk2, d5hkkk3, d5hkkl1, d5hkkl2, d5hkkl3, d5hkkm1, d5hkkm2, d5hkkm3, d5hkkn1, d5hkkn2, d5hkkn3
automated match to d2jdig_
complexed with adp, atp, gol, mg, po4

Domains for 5ik2:

Domain d5ik2g_: 5ik2 G: [323178]
Other proteins in same PDB: d5ik2a1, d5ik2a2, d5ik2a3, d5ik2b1, d5ik2b2, d5ik2b3, d5ik2c1, d5ik2c2, d5ik2c3, d5ik2d1, d5ik2d2, d5ik2d3, d5ik2e1, d5ik2e2, d5ik2e3, d5ik2f1, d5ik2f2, d5ik2f3, d5ik2i1, d5ik2i2, d5ik2i3, d5ik2j1, d5ik2j2, d5ik2j3, d5ik2k1, d5ik2k2, d5ik2k3, d5ik2l1, d5ik2l2, d5ik2l3, d5ik2m1, d5ik2m2, d5ik2m3, d5ik2n1, d5ik2n2, d5ik2n3
automated match to d2v7qg_
complexed with adp, gol, mg, po4; mutant

Domain d5ik2o_: 5ik2 O: [323177]
Other proteins in same PDB: d5ik2a1, d5ik2a2, d5ik2a3, d5ik2b1, d5ik2b2, d5ik2b3, d5ik2c1, d5ik2c2, d5ik2c3, d5ik2d1, d5ik2d2, d5ik2d3, d5ik2e1, d5ik2e2, d5ik2e3, d5ik2f1, d5ik2f2, d5ik2f3, d5ik2i1, d5ik2i2, d5ik2i3, d5ik2j1, d5ik2j2, d5ik2j3, d5ik2k1, d5ik2k2, d5ik2k3, d5ik2l1, d5ik2l2, d5ik2l3, d5ik2m1, d5ik2m2, d5ik2m3, d5ik2n1, d5ik2n2, d5ik2n3
automated match to d2v7qg_
complexed with adp, gol, mg, po4; mutant

Escherichia coli [TaxId:475609] [388194] (1 PDB entry)

Domain for 6oqw:

Domain d6oqwg_: 6oqw G: [388195]
Other proteins in same PDB: d6oqwd1, d6oqwd2, d6oqwd3, d6oqwe1, d6oqwe2, d6oqwe3, d6oqwf1, d6oqwf2, d6oqwf3, d6oqwh1, d6oqwh2, d6oqwi_, d6oqwj_, d6oqwl_, d6oqwm_, d6oqwn_, d6oqwo_, d6oqwp_, d6oqwq_, d6oqwr_, d6oqws_
automated match to d2xokg_
complexed with adp, atp, mg, po4

Escherichia coli [TaxId:562] [388134] (2 PDB entries)

Domain for 6oqr:

Domain d6oqrg_: 6oqr G: [388135]
Other proteins in same PDB: d6oqrd1, d6oqrd2, d6oqrd3, d6oqre1, d6oqre2, d6oqre3, d6oqrf1, d6oqrf2, d6oqrf3, d6oqrh1, d6oqrh2, d6oqri_, d6oqrj_, d6oqrl_, d6oqrm_, d6oqrn_, d6oqro_, d6oqrp_, d6oqrq_, d6oqrr_, d6oqrs_
automated match to d2xokg_
complexed with adp, atp, mg, po4

Domain for 6oqt:

Domain d6oqtg_: 6oqt G: [388174]
Other proteins in same PDB: d6oqtd1, d6oqtd2, d6oqtd3, d6oqte1, d6oqte2, d6oqte3, d6oqtf1, d6oqtf2, d6oqtf3, d6oqth1, d6oqth2, d6oqti_, d6oqtj_, d6oqtl_, d6oqtm_, d6oqtn_, d6oqto_, d6oqtp_, d6oqtq_, d6oqtr_, d6oqts_
automated match to d2xokg_
complexed with adp, atp, mg, po4

Polytomella sp. [TaxId:37502] [371495] (16 PDB entries)
1. Domain for 6rd4:
  - Domain d6rd4s_: 6rd4 S: [371540]
    automated match to d2v7qg_
    complexed with adp, atp, mg, zn
2. Domain for 6rd9:
  - Domain d6rd9s_: 6rd9 S: [371539]
    automated match to d2v7qg_
    complexed with adp, atp, mg, zn
3. Domain for 6rdb:
  - Domain d6rdbs_: 6rdb S: [371518]
    Other proteins in same PDB: d6rdbt1, d6rdbt2, d6rdbt3
    automated match to d2v7qg_
    complexed with adp, atp, mg
4. Domain for 6rde:
  - Domain d6rdes_: 6rde S: [371529]
    Other proteins in same PDB: d6rdet1, d6rdet2, d6rdet3
    automated match to d2v7qg_
    complexed with adp, atp, mg
5. Domain for 6rdg:
  - Domain d6rdgs_: 6rdg S: [371559]
    Other proteins in same PDB: d6rdgt1, d6rdgt2, d6rdgt3
    automated match to d2v7qg_
    complexed with adp, atp, mg
6. Domain for 6rdh:
  - Domain d6rdhs_: 6rdh S: [371538]
    automated match to d2v7qg_
    complexed with adp, atp, mg, zn
7. Domain for 6rdj:
  - Domain d6rdjs_: 6rdj S: [371496]
    Other proteins in same PDB: d6rdjt1, d6rdjt2, d6rdjt3
    automated match to d2v7qg_
    complexed with adp, atp, mg
8. Domain for 6rdo:
  - Domain d6rdos_: 6rdo S: [371537]
    automated match to d2v7qg_
    complexed with adp, atp, mg, zn
9. Domain for 6rdp:
  - Domain d6rdps_: 6rdp S: [371545]
    Other proteins in same PDB: d6rdpt1, d6rdpt2, d6rdpt3
    automated match to d2v7qg_
    complexed with adp, atp, mg
10. Domain for 6rdv:
  - Domain d6rdvs_: 6rdv S: [371503]
    Other proteins in same PDB: d6rdvt1, d6rdvt2, d6rdvt3
    automated match to d2v7qg_
    complexed with adp, atp, mg
11. Domain for 6re4:
  - Domain d6re4s_: 6re4 S: [371549]
    Other proteins in same PDB: d6re4t1, d6re4t2, d6re4t3
    automated match to d2v7qg_
    complexed with adp, atp, mg
12. Domain for 6re7:
  - Domain d6re7s_: 6re7 S: [371552]
    Other proteins in same PDB: d6re7t1, d6re7t2, d6re7t3
    automated match to d2v7qg_
    complexed with adp, atp, mg
13. Domain for 6red:
  - Domain d6reds_: 6red S: [371563]
    Other proteins in same PDB: d6redt1, d6redt2, d6redt3
    automated match to d2v7qg_
    complexed with adp, atp, mg
14. Domain for 6ree:
  - Domain d6rees_: 6ree S: [371567]
    automated match to d2v7qg_
    complexed with adp, atp, mg, zn
15. Domain for 6rep:
  - Domain d6reps_: 6rep S: [371558]
    automated match to d2v7qg_
    complexed with adp, atp, mg, zn
16. Domain for 6rer:
  - Domain d6rers_: 6rer S: [371571]
    Other proteins in same PDB: d6rert1, d6rert2, d6rert3
    automated match to d2v7qg_
    complexed with adp, atp, mg

Toxoplasma gondii [TaxId:507601] [397895] (1 PDB entry)

Domain for 6tmh:

Domain d6tmhg_: 6tmh g: [397896]
Other proteins in same PDB: d6tmha1, d6tmha2, d6tmha3, d6tmhb1, d6tmhb2, d6tmhb3, d6tmhc1, d6tmhc2, d6tmhc3, d6tmhd1, d6tmhd2, d6tmhd3, d6tmhe1, d6tmhe2, d6tmhe3, d6tmhf1, d6tmhf2, d6tmhf3
automated match to d2jdig_
complexed with adp, atp, mg

More info for Protein automated matches from c.49.2.0: automated matches

Timeline for Protein automated matches from c.49.2.0: automated matches:

Protein automated matches from c.49.2.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from c.49.2.0: automated matches appears in SCOPe 2.06
Protein automated matches from c.49.2.0: automated matches appears in the current release, SCOPe 2.08