Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2924180Fold d.2: Lysozyme-like [53954] (1 superfamily)
    common alpha+beta motif for the active site region
  4. 2924181Superfamily d.2.1: Lysozyme-like [53955] (12 families) (S)
  5. 2926515Family d.2.1.0: automated matches [191411] (1 protein)
    not a true family
  6. 2926516Protein automated matches [190563] (18 species)
    not a true protein

Species:

  1. 2926517Bacillus subtilis [TaxId:224308] [401778] (2 PDB entries)
    1. Domain for 7c6c:
    2. Domain for 7c6d:
  2. 2926520Bryum coronatum [TaxId:216087] [237943] (2 PDB entries)
    1. Domain for 3wh1:
    2. Domain for 4ij4:
  3. 2926523Chicken (Gallus gallus) [TaxId:9031] [322253] (1 PDB entry)
  4. 2926526Enterobacteria phage [TaxId:10665] [390028] (1 PDB entry)
  5. 2926528Escherichia virus t4 [TaxId:10665] [396296] (2 PDB entries)
    1. Domains for 6xc0:
      1. 2926529Domain d6xc0a_: 6xc0 A: [396297]
        automated match to d226la_
        complexed with cl, edo, epe, fmt, sin
      2. 2926530Domain d6xc0b_: 6xc0 B: [396314]
        automated match to d226la_
        complexed with cl, edo, epe, fmt, sin
    2. Domain for 6xc1:
  6. 2926532Gynuella sunshinyii [TaxId:1445510] [399757] (2 PDB entries)
    1. Domain for 6lwu:
    2. Domain for 6x2q:
  7. 2926535House fly (Musca domestica) [TaxId:7370] [187696] (3 PDB entries)
    1. Domains for 2fbd:
      1. 2926540Domain d2fbda_: 2fbd A: [164320]
        automated match to d1gd6a_
        complexed with peg, so4
      2. 2926541Domain d2fbdb_: 2fbd B: [164321]
        automated match to d1gd6a_
        complexed with peg, so4
    2. Domains for 2h5z:
      1. 2926538Domain d2h5za_: 2h5z A: [164956]
        automated match to d1gd6a_
      2. 2926539Domain d2h5zb_: 2h5z B: [164957]
        automated match to d1gd6a_
    3. Domains for 3cb7:
      1. 2926536Domain d3cb7a1: 3cb7 A:5-126 [173114]
        Other proteins in same PDB: d3cb7a2, d3cb7b2
        automated match to d1gd6a_
        complexed with acy, gol, ipa
      2. 2926537Domain d3cb7b1: 3cb7 B:5-126 [173115]
        Other proteins in same PDB: d3cb7a2, d3cb7b2
        automated match to d1gd6a_
        complexed with acy, gol, ipa
  8. 2926542Human (Homo sapiens) [TaxId:9606] [228081] (1 PDB entry)
  9. 2926545Maize (Zea mays) [TaxId:4577] [237294] (1 PDB entry)
  10. 2926547Mouse (Mus musculus) [TaxId:10090] [187760] (1 PDB entry)
  11. 2926551Mycobacterium tuberculosis [TaxId:1773] [236519] (2 PDB entries)
    1. Domains for 4cge:
      1. 2926560Domain d4cgea_: 4cge A: [236523]
        automated match to d1xsfa1
      2. 2926561Domain d4cgeb_: 4cge B: [236522]
        automated match to d1xsfa1
      3. 2926562Domain d4cgec_: 4cge C: [236524]
        automated match to d1xsfa1
      4. 2926563Domain d4cged_: 4cge D: [236521]
        automated match to d1xsfa1
      5. 2926564Domain d4cgee_: 4cge E: [236525]
        automated match to d1xsfa1
      6. 2926565Domain d4cgef_: 4cge F: [236526]
        automated match to d1xsfa1
    2. Domains for 4ow1:
      1. 2926552Domain d4ow1a_: 4ow1 A: [257338]
        automated match to d4emna_
        complexed with edo
      2. 2926553Domain d4ow1b_: 4ow1 B: [263355]
        automated match to d4ow1a_
        complexed with edo
      3. 2926554Domain d4ow1e_: 4ow1 E: [263356]
        automated match to d4ow1a_
        complexed with edo
      4. 2926555Domain d4ow1s_: 4ow1 S: [258968]
        automated match to d4emna_
        complexed with edo
      5. 2926556Domain d4ow1t_: 4ow1 T: [263357]
        automated match to d4ow1a_
        complexed with edo
      6. 2926557Domain d4ow1u_: 4ow1 U: [263358]
        automated match to d4ow1a_
        complexed with edo
      7. 2926558Domain d4ow1w_: 4ow1 W: [263359]
        automated match to d4ow1a_
        complexed with edo
      8. 2926559Domain d4ow1x_: 4ow1 X: [263360]
        automated match to d4ow1a_
        complexed with edo
  12. 2926566Mycobacterium tuberculosis [TaxId:83332] [279624] (1 PDB entry)
  13. 2926568Penaeus vannamei [TaxId:6689] [382879] (2 PDB entries)
    1. Domain for 6ukc:
    2. Domains for 6ul3:
      1. 2926570Domain d6ul3a_: 6ul3 A: [382880]
        automated match to d1c7pa_
      2. 2926571Domain d6ul3b_: 6ul3 B: [382885]
        automated match to d1c7pa_
  14. 2926572Picea abies [TaxId:3329] [188984] (3 PDB entries)
    1. Domain for 3hbd:
    2. Domain for 3hbe:
    3. Domain for 3hbh:
  15. 2926576Silkworm (Bombyx mori) [TaxId:7091] [255591] (1 PDB entry)
  16. 2926578Staphylococcus aureus [TaxId:196620] [188997] (1 PDB entry)
  17. 2926580Streptomyces coelicolor [TaxId:1902] [187551] (1 PDB entry)
  18. 2926583Streptomyces griseus [TaxId:1911] [254952] (3 PDB entries)
    1. Domain for 1wvu:
    2. Domain for 1wvv:
    3. Domains for 2dbt:
      1. 2926586Domain d2dbta_: 2dbt A: [241547]
        automated match to d2cjla_
        complexed with epe
      2. 2926587Domain d2dbtb_: 2dbt B: [241548]
        automated match to d2cjla_
        complexed with epe
      3. 2926588Domain d2dbtc_: 2dbt C: [241549]
        automated match to d2cjla_
        complexed with epe

More info for Protein automated matches from d.2.1.0: automated matches

Timeline for Protein automated matches from d.2.1.0: automated matches: