Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2459390Fold c.50: Macro domain-like [52948] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 6 strands, order 165243, strand 3 is antiparallel to the rest
  4. 2459391Superfamily c.50.1: Macro domain-like [52949] (4 families) (S)
  5. 2459416Family c.50.1.2: Macro domain [89724] (7 protein domains)
    found in different proteins, including macro-H2a histone and the Appr-1"-p processing enzyme
  6. 2459459Protein automated matches [190472] (6 species)
    not a true protein

Species:

  1. 2459460Bacteroides thetaiotaomicron [TaxId:226186] [187703] (1 PDB entry)
  2. 2459462Escherichia coli [TaxId:562] [278890] (1 PDB entry)
  3. 2459481Escherichia coli [TaxId:83333] [278845] (2 PDB entries)
    1. Domain for 5cb3:
    2. Domains for 5cb5:
      1. 2459483Domain d5cb5a_: 5cb5 A: [278849]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      2. 2459484Domain d5cb5b_: 5cb5 B: [278848]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      3. 2459485Domain d5cb5c_: 5cb5 C: [278846]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      4. 2459486Domain d5cb5d_: 5cb5 D: [278853]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      5. 2459487Domain d5cb5e_: 5cb5 E: [278847]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      6. 2459488Domain d5cb5f_: 5cb5 F: [278856]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      7. 2459489Domain d5cb5g_: 5cb5 G: [278855]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      8. 2459490Domain d5cb5h_: 5cb5 H: [278861]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      9. 2459491Domain d5cb5i_: 5cb5 I: [278858]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      10. 2459492Domain d5cb5j_: 5cb5 J: [278857]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      11. 2459493Domain d5cb5k_: 5cb5 K: [278862]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      12. 2459494Domain d5cb5l_: 5cb5 L: [278860]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      13. 2459495Domain d5cb5m_: 5cb5 M: [278859]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      14. 2459496Domain d5cb5n_: 5cb5 N: [278865]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      15. 2459497Domain d5cb5o_: 5cb5 O: [278866]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      16. 2459498Domain d5cb5p_: 5cb5 P: [278868]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      17. 2459499Domain d5cb5q_: 5cb5 Q: [278872]
        automated match to d1spva_
        complexed with act, apr, so4, zod
      18. 2459500Domain d5cb5r_: 5cb5 R: [278871]
        automated match to d1spva_
        complexed with act, apr, so4, zod
  4. 2459501Human (Homo sapiens) [TaxId:9606] [189352] (2 PDB entries)
    1. Domains for 2xd7:
      1. 2459502Domain d2xd7a_: 2xd7 A: [170036]
        automated match to d1zr5a1
      2. 2459503Domain d2xd7b_: 2xd7 B: [170037]
        automated match to d1zr5a1
      3. 2459504Domain d2xd7c_: 2xd7 C: [170038]
        automated match to d1zr5a1
      4. 2459505Domain d2xd7d_: 2xd7 D: [170039]
        automated match to d1zr5a1
    2. Domains for 6fy5:
      1. 3050653Domain d6fy5b_: 6fy5 B: [350715]
        Other proteins in same PDB: d6fy5a2
        automated match to d2xd7c_
        complexed with act, edo
      2. 3050663Domain d6fy5a1: 6fy5 A:178-372 [350725]
        Other proteins in same PDB: d6fy5a2
        automated match to d2xd7c_
        complexed with act, edo
  5. 2459506Sars coronavirus tor2 [TaxId:227984] [187392] (1 PDB entry)
  6. 2459510SARS coronavirus [TaxId:227859] [187695] (1 PDB entry)

More info for Protein automated matches from c.50.1.2: Macro domain

Timeline for Protein automated matches from c.50.1.2: Macro domain: