PDB entry 5son

View 5son on RCSB PDB site
Description: PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000920153280 - (R) isomer
Class: viral protein
Keywords: Macrodomain, ADP-ribose, SARS-CoV-2, VIRAL PROTEIN
Deposited on 2022-06-09, released 2022-07-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2022-07-13, with a file datestamp of 2022-07-08.
Experiment type: XRAY
Resolution: 1.05 Å
R-factor: N/A
AEROSPACI score: 0.77 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: non-structural protein 3
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTD1 (2-168)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d5sona_
  • Chain 'B':
    Compound: non-structural protein 3
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: rep, 1a-1b
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTD1 (2-168)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d5sonb1, d5sonb2
  • Heterogens: WW1, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5sonA (A:)
smvnsfsgylkltdnvyiknadiveeakkvkptvvvnaanvylkhgggvagalnkatnna
mqvesddyiatngplkvggscvlsghnlakhclhvvgpnvnkgediqllksayenfnqhe
vllapllsagifgadpihslrvcvdtvrtnvylavfdknlydklvssfl

    Sequence, based on observed residues (ATOM records): (download) 
    >5sonA (A:)
vnsfsgylkltdnvyiknadiveeakkvkptvvvnaanvylkhgggvagalnkatnnamq
vesddyiatngplkvggscvlsghnlakhclhvvgpnvnkgediqllksayenfnqhevl
lapllsagifgadpihslrvcvdtvrtnvylavfdknlydklvssfl

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5sonB (B:)
smvnsfsgylkltdnvyiknadiveeakkvkptvvvnaanvylkhgggvagalnkatnna
mqvesddyiatngplkvggscvlsghnlakhclhvvgpnvnkgediqllksayenfnqhe
vllapllsagifgadpihslrvcvdtvrtnvylavfdknlydklvssfl