SCOPe 2.08: Protein: Glutamine PRPP amidotransferase, N-terminal domain

Lineage for Protein: Glutamine PRPP amidotransferase, N-terminal domain

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families)
N-terminal residue provides two catalytic groups, nucleophile and proton donor
Family d.153.1.1: Class II glutamine amidotransferases [56236] (6 proteins)
has slightly different topology than other families do
Protein Glutamine PRPP amidotransferase, N-terminal domain [56239] (3 species)

Species:

Bacillus subtilis [TaxId:1423] [56240] (2 PDB entries)
1. Domains for 1ao0:
  1. Domain d1ao0a2: 1ao0 A:1-234 [41816]
    Other proteins in same PDB: d1ao0a1, d1ao0b1, d1ao0c1, d1ao0d1
    complexed with 5gp, adp, mg, sf4
  2. Domain d1ao0b2: 1ao0 B:1-234 [41817]
    Other proteins in same PDB: d1ao0a1, d1ao0b1, d1ao0c1, d1ao0d1
    complexed with 5gp, adp, mg, sf4
  3. Domain d1ao0c2: 1ao0 C:1-234 [41818]
    Other proteins in same PDB: d1ao0a1, d1ao0b1, d1ao0c1, d1ao0d1
    complexed with 5gp, adp, mg, sf4
  4. Domain d1ao0d2: 1ao0 D:1-234 [41819]
    Other proteins in same PDB: d1ao0a1, d1ao0b1, d1ao0c1, d1ao0d1
    complexed with 5gp, adp, mg, sf4
2. Domains for 1gph:
  1. Domain d1gph12: 1gph 1:1-234 [41812]
    Other proteins in same PDB: d1gph11, d1gph21, d1gph31, d1gph41
    complexed with amp, sf4
  2. Domain d1gph22: 1gph 2:1-234 [41813]
    Other proteins in same PDB: d1gph11, d1gph21, d1gph31, d1gph41
    complexed with amp, sf4
  3. Domain d1gph32: 1gph 3:1-234 [41814]
    Other proteins in same PDB: d1gph11, d1gph21, d1gph31, d1gph41
    complexed with amp, sf4
  4. Domain d1gph42: 1gph 4:1-234 [41815]
    Other proteins in same PDB: d1gph11, d1gph21, d1gph31, d1gph41
    complexed with amp, sf4
Escherichia coli [TaxId:562] [56241] (5 PDB entries)
1. Domains for 1ecb:
  1. Domain d1ecba2: 1ecb A:1-249 [41830]
    Other proteins in same PDB: d1ecba1, d1ecbb1, d1ecbc1, d1ecbd1
    complexed with 5gp, mg
  2. Domain d1ecbb2: 1ecb B:1-249 [41831]
    Other proteins in same PDB: d1ecba1, d1ecbb1, d1ecbc1, d1ecbd1
    complexed with 5gp, mg
  3. Domain d1ecbc2: 1ecb C:1-249 [41832]
    Other proteins in same PDB: d1ecba1, d1ecbb1, d1ecbc1, d1ecbd1
    complexed with 5gp, mg
  4. Domain d1ecbd2: 1ecb D:1-249 [41833]
    Other proteins in same PDB: d1ecba1, d1ecbb1, d1ecbc1, d1ecbd1
    complexed with 5gp, mg
2. Domains for 1ecc:
  1. Domain d1ecca2: 1ecc A:1-249 [41824]
    Other proteins in same PDB: d1ecca1, d1eccb1
    complexed with mn, onl, pcp
  2. Domain d1eccb2: 1ecc B:1-249 [41825]
    Other proteins in same PDB: d1ecca1, d1eccb1
    complexed with mn, onl, pcp
3. Domains for 1ecf:
  1. Domain d1ecfa2: 1ecf A:1-249 [41820]
    Other proteins in same PDB: d1ecfa1, d1ecfb1
    complexed with pin
  2. Domain d1ecfb2: 1ecf B:1-249 [41821]
    Other proteins in same PDB: d1ecfa1, d1ecfb1
    complexed with pin
4. Domains for 1ecg:
  1. Domain d1ecga2: 1ecg A:1-249 [41822]
    Other proteins in same PDB: d1ecga1, d1ecgb1
    complexed with onl, pin
  2. Domain d1ecgb2: 1ecg B:1-249 [41823]
    Other proteins in same PDB: d1ecga1, d1ecgb1
    complexed with onl, pin
5. Domains for 1ecj:
  1. Domain d1ecja2: 1ecj A:1-249 [41826]
    Other proteins in same PDB: d1ecja1, d1ecjb1, d1ecjc1, d1ecjd1
    complexed with amp
  2. Domain d1ecjb2: 1ecj B:1-249 [41827]
    Other proteins in same PDB: d1ecja1, d1ecjb1, d1ecjc1, d1ecjd1
    complexed with amp
  3. Domain d1ecjc2: 1ecj C:1-249 [41828]
    Other proteins in same PDB: d1ecja1, d1ecjb1, d1ecjc1, d1ecjd1
    complexed with amp
  4. Domain d1ecjd2: 1ecj D:1-249 [41829]
    Other proteins in same PDB: d1ecja1, d1ecjb1, d1ecjc1, d1ecjd1
    complexed with amp
Escherichia coli [TaxId:83333] [376540] (2 PDB entries)
1. Domains for 6czf:
  1. Domain d6czfb1: 6czf B:1-249 [358432]
    Other proteins in same PDB: d6czfb2, d6czfd2
    automated match to d1ecfa2
    complexed with g4p, mg
  2. Domain d6czfd1: 6czf D:1-249 [358588]
    Other proteins in same PDB: d6czfb2, d6czfd2
    automated match to d1ecfa2
    complexed with g4p, mg
2. Domains for 6ott:
  1. Domain d6otta1: 6ott A:1-249 [376546]
    Other proteins in same PDB: d6otta2, d6ottb2
    automated match to d1ecfb2
    complexed with mg, n7y
  2. Domain d6ottb1: 6ott B:1-249 [376541]
    Other proteins in same PDB: d6otta2, d6ottb2
    automated match to d1ecfb2
    complexed with mg, n7y

More info for Protein Glutamine PRPP amidotransferase, N-terminal domain from d.153.1.1: Class II glutamine amidotransferases

Timeline for Protein Glutamine PRPP amidotransferase, N-terminal domain from d.153.1.1: Class II glutamine amidotransferases:

Protein Glutamine PRPP amidotransferase, N-terminal domain from d.153.1.1: Class II glutamine amidotransferases first appeared (with stable ids) in SCOP 1.55
Protein Glutamine PRPP amidotransferase, N-terminal domain from d.153.1.1: Class II glutamine amidotransferases appears in SCOPe 2.07