SCOPe 2.08: Protein: p65 subunit of NF-kappa B (NFKB), dimerization domain

Lineage for Protein: p65 subunit of NF-kappa B (NFKB), dimerization domain

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.18: E set domains [81296] (27 families)
"Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies
Family b.1.18.1: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain [81279] (8 proteins)
subgroup of the larger IPT/TIG domain family
Protein p65 subunit of NF-kappa B (NFKB), dimerization domain [49253] (3 species)

Species:

Chicken (Gallus gallus), C-rel [TaxId:9031] [74848] (1 PDB entry)
- Domains for 1gji:
  1. Domain d1gjia1: 1gji A:182-281 [70187]
    Other proteins in same PDB: d1gjia2, d1gjib2
    protein/DNA complex
  2. Domain d1gjib1: 1gji B:182-281 [70189]
    Other proteins in same PDB: d1gjia2, d1gjib2
    protein/DNA complex
Human (Homo sapiens) [TaxId:9606] [49255] (1 PDB entry)
- Domains for 1nfi:
  1. Domain d1nfia1: 1nfi A:190-314 [21942]
    Other proteins in same PDB: d1nfia2, d1nfib_, d1nfic2, d1nfid_, d1nfie_, d1nfif_
  2. Domain d1nfic1: 1nfi C:190-320 [21943]
    Other proteins in same PDB: d1nfia2, d1nfib_, d1nfic2, d1nfid_, d1nfie_, d1nfif_
Mouse (Mus musculus) [TaxId:10090] [49254] (13 PDB entries)
1. Domains for 1bft:
  1. Domain d1bfta_: 1bft A: [21934]
  2. Domain d1bftb_: 1bft B: [21935]
2. Domain for 1ikn:
  - Domain d1ikna1: 1ikn A:192-303 [21936]
    Other proteins in same PDB: d1ikna2, d1iknc_, d1iknd_
3. Domains for 1k3z:
  1. Domain d1k3za_: 1k3z A: [77249]
    Other proteins in same PDB: d1k3zd_
  2. Domain d1k3zb_: 1k3z B: [77250]
    Other proteins in same PDB: d1k3zd_
4. Domains for 1le5:
  1. Domain d1le5a1: 1le5 A:192-291 [84583]
    Other proteins in same PDB: d1le5a2, d1le5a3, d1le5b1, d1le5b2, d1le5e2, d1le5e3, d1le5f1, d1le5f2
    protein/DNA complex
  2. Domain d1le5e1: 1le5 E:192-291 [84587]
    Other proteins in same PDB: d1le5a2, d1le5a3, d1le5b1, d1le5b2, d1le5e2, d1le5e3, d1le5f1, d1le5f2
    protein/DNA complex
5. Domains for 1le9:
  1. Domain d1le9a1: 1le9 A:192-291 [84591]
    Other proteins in same PDB: d1le9a2, d1le9a3, d1le9b1, d1le9b2, d1le9e2, d1le9e3, d1le9f1, d1le9f2
    protein/DNA complex
  2. Domain d1le9e1: 1le9 E:192-291 [84595]
    Other proteins in same PDB: d1le9a2, d1le9a3, d1le9b1, d1le9b2, d1le9e2, d1le9e3, d1le9f1, d1le9f2
    protein/DNA complex
6. Domain for 1lei:
  - Domain d1leia1: 1lei A:192-291 [84599]
    Other proteins in same PDB: d1leia2, d1leia3, d1leib1, d1leib2
    protein/DNA complex
7. Domains for 1my5:
  1. Domain d1my5a_: 1my5 A: [79673]
  2. Domain d1my5b_: 1my5 B: [79674]
8. Domains for 1my7:
  1. Domain d1my7a_: 1my7 A: [79675]
    mutant
  2. Domain d1my7b_: 1my7 B: [79676]
    mutant
9. Domains for 1oy3:
  1. Domain d1oy3b_: 1oy3 B: [87552]
    Other proteins in same PDB: d1oy3d_
    protein/DNA complex
  2. Domain d1oy3c_: 1oy3 C: [87553]
    Other proteins in same PDB: d1oy3d_
    protein/DNA complex
10. Domains for 1ram:
  1. Domain d1rama1: 1ram A:192-291 [21939]
    Other proteins in same PDB: d1rama2, d1ramb2
    protein/DNA complex; complexed with dtt
  2. Domain d1ramb1: 1ram B:192-291 [21940]
    Other proteins in same PDB: d1rama2, d1ramb2
    protein/DNA complex; complexed with dtt
11. Domain for 1vkx:
  - Domain d1vkxa1: 1vkx A:192-291 [21941]
    Other proteins in same PDB: d1vkxa2, d1vkxb1, d1vkxb2
    protein/DNA complex
12. Domain for 2i9t:
  - Domain d2i9ta1: 2i9t A:191-291 [137129]
    Other proteins in same PDB: d2i9ta2, d2i9ta3, d2i9tb1, d2i9tb2
    automated match to d1gjia1
    protein/DNA complex
13. Domains for 2ram:
  1. Domain d2rama1: 2ram A:192-291 [21937]
    Other proteins in same PDB: d2rama2, d2ramb2
    protein/DNA complex; complexed with dtv
  2. Domain d2ramb1: 2ram B:192-291 [21938]
    Other proteins in same PDB: d2rama2, d2ramb2
    protein/DNA complex; complexed with dtv

More info for Protein p65 subunit of NF-kappa B (NFKB), dimerization domain from b.1.18.1: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain

Timeline for Protein p65 subunit of NF-kappa B (NFKB), dimerization domain from b.1.18.1: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain:

Protein p65 subunit of NF-kappa B (NFKB), dimerization domain from b.1.18.1: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain first appeared (with stable ids) in SCOP 1.55, called Protein p65 subunit of NF-kappa B (NFKB), C-terminal domain from b.1.1.5: E set domains
Protein p65 subunit of NF-kappa B (NFKB), dimerization domain from b.1.18.1: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain appears in SCOPe 2.07