Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2147804Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
    core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
  4. 2147805Superfamily c.97.1: Cytidine deaminase-like [53927] (7 families) (S)
    contains extra C-terminal strand 5, order 21345
  5. 2148064Family c.97.1.0: automated matches [191471] (1 protein)
    not a true family
  6. 2148065Protein automated matches [190746] (12 species)
    not a true protein

Species:

  1. 2148066Acinetobacter baumannii [TaxId:470] [226627] (2 PDB entries)
    1. Domains for 3zpc:
      1. 2148068Domain d3zpca1: 3zpc A:2-150 [218391]
        Other proteins in same PDB: d3zpca2, d3zpcb2
        automated match to d2hxva2
        complexed with act, po4, zn
      2. 2148069Domain d3zpcb1: 3zpc B:3-150 [218393]
        Other proteins in same PDB: d3zpca2, d3zpcb2
        automated match to d2hxva2
        complexed with act, po4, zn
    2. Domain for 3zpg:
  2. 2148070Artificial gene [TaxId:32630] [311227] (1 PDB entry)
  3. 2148072Escherichia coli [TaxId:562] [267777] (1 PDB entry)
  4. 2148075Escherichia coli [TaxId:83333] [267797] (2 PDB entries)
    1. Domains for 2o7p:
      1. 2148078Domain d2o7pa1: 2o7p A:2-146 [264427]
        Other proteins in same PDB: d2o7pa2, d2o7pa3, d2o7pb2, d2o7pb3
        automated match to d2b3za2
        complexed with nap
      2. 2148079Domain d2o7pb1: 2o7p B:2-146 [264429]
        Other proteins in same PDB: d2o7pa2, d2o7pa3, d2o7pb2, d2o7pb3
        automated match to d2b3za2
        complexed with nap
    2. Domains for 2obc:
      1. 2148076Domain d2obca1: 2obc A:2-146 [264435]
        Other proteins in same PDB: d2obca2, d2obca3, d2obcb2, d2obcb3
        automated match to d2b3za2
        complexed with rp5
      2. 2148077Domain d2obcb1: 2obc B:2-146 [264437]
        Other proteins in same PDB: d2obca2, d2obca3, d2obcb2, d2obcb3
        automated match to d2b3za2
        complexed with rp5
  5. 2148080Fungus (Coccidioides immitis) [TaxId:5501] [225967] (1 PDB entry)
  6. 2148085Human (Homo sapiens) [TaxId:9606] [225587] (2 PDB entries)
    1. Domains for 2w4l:
      1. 2148086Domain d2w4la_: 2w4l A: [206618]
        automated match to d1vq2a_
        complexed with cl, zn
      2. 2148087Domain d2w4lb_: 2w4l B: [206619]
        automated match to d1vq2a_
        complexed with cl, zn
      3. 2148088Domain d2w4lc_: 2w4l C: [206620]
        automated match to d1vq2a_
        complexed with cl, zn
      4. 2148089Domain d2w4ld_: 2w4l D: [206621]
        automated match to d1vq2a_
        complexed with cl, zn
      5. 2148090Domain d2w4le_: 2w4l E: [206622]
        automated match to d1vq2a_
        complexed with cl, zn
      6. 2148091Domain d2w4lf_: 2w4l F: [206623]
        automated match to d1vq2a_
        complexed with cl, zn
    2. Domains for 3dh1:
      1. 2148092Domain d3dh1a1: 3dh1 A:20-173 [245636]
        Other proteins in same PDB: d3dh1a2, d3dh1b2, d3dh1c2, d3dh1d2
        automated match to d2b3jc_
        complexed with zn
      2. 2148093Domain d3dh1b1: 3dh1 B:20-172 [245637]
        Other proteins in same PDB: d3dh1a2, d3dh1b2, d3dh1c2, d3dh1d2
        automated match to d2b3jc_
        complexed with zn
      3. 2148094Domain d3dh1c1: 3dh1 C:20-172 [245638]
        Other proteins in same PDB: d3dh1a2, d3dh1b2, d3dh1c2, d3dh1d2
        automated match to d2b3jc_
        complexed with zn
      4. 2148095Domain d3dh1d1: 3dh1 D:20-173 [245639]
        Other proteins in same PDB: d3dh1a2, d3dh1b2, d3dh1c2, d3dh1d2
        automated match to d2b3jc_
        complexed with zn
  7. 2148096Mycobacterium leprae [TaxId:561304] [189682] (1 PDB entry)
  8. 2148101Mycobacterium marinum [TaxId:216594] [195312] (1 PDB entry)
  9. 2148106Mycobacterium smegmatis [TaxId:246196] [225900] (1 PDB entry)
  10. 2148111Mycobacterium tuberculosis [TaxId:1773] [196473] (3 PDB entries)
    1. Domain for 3ijf:
    2. Domains for 4wif:
      1. 2148115Domain d4wifa_: 4wif A: [276766]
        automated match to d1r5tc_
        complexed with zn; mutant
      2. 2148116Domain d4wifb_: 4wif B: [276767]
        automated match to d1r5tc_
        complexed with zn; mutant
    3. Domains for 4wig:
      1. 2148113Domain d4wiga_: 4wig A: [276041]
        automated match to d1r5tc_
        complexed with zn; mutant
      2. 2148114Domain d4wigb_: 4wig B: [276039]
        automated match to d1r5tc_
        complexed with zn; mutant
  11. 2148117Streptococcus pyogenes [TaxId:301450] [187931] (1 PDB entry)
  12. 2148119Vibrio cholerae [TaxId:666] [226364] (1 PDB entry)

More info for Protein automated matches from c.97.1.0: automated matches

Timeline for Protein automated matches from c.97.1.0: automated matches: