PDB entry 2g6v

View 2g6v on RCSB PDB site
Description: The crystal structure of ribD from Escherichia coli
Class: hydrolase, oxidoreductase
Keywords: ribD apo structure, Structural Genomics, Structural Proteomics in Europe, SPINE, HYDROLASE, OXIDOREDUCTASE
Deposited on 2006-02-25, released 2007-02-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.246
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Riboflavin biosynthesis protein ribD
    Species: Escherichia coli [TaxId:562]
    Gene: ribD, ribG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P25539 (28-393)
      • expression tag (22-27)
      • modified residue (33)
      • modified residue (84)
      • modified residue (126)
      • modified residue (153-154)
      • modified residue (168)
      • modified residue (189)
      • modified residue (311-312)
    Domains in SCOPe 2.08: d2g6va1, d2g6va2, d2g6va3
  • Chain 'B':
    Compound: Riboflavin biosynthesis protein ribD
    Species: Escherichia coli [TaxId:562]
    Gene: ribD, ribG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P25539 (28-393)
      • expression tag (22-27)
      • modified residue (33)
      • modified residue (84)
      • modified residue (126)
      • modified residue (153-154)
      • modified residue (168)
      • modified residue (189)
      • modified residue (311-312)
    Domains in SCOPe 2.08: d2g6vb1, d2g6vb2, d2g6vb3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2g6vA (A:)
mdykddddkgsstslykkagsetlyiqgqdeyymaralklaqrgrftthpnpnvgcvivk
dgeivgegyhqragephaevhalrmagekakgatayvtlepcshhgrtppccdaliaagv
arvvasmqdpnpqvagrglyrlqqagidvshglmmseaeqlnkgflkrmrtgfpyiqlkl
gasldgrtamasgesqwitspqarrdvqllraqshailtssatvladdpaltvrwselde
qtqalypqqnlrqpirividsqnrvtpvhrivqqpgetwfartqedsrewpetvrtllip
ehkghldlvvlmmqlgkqqinsiwveagptlagallqaglvdelivyiapkllgsdargl
ctlpglekladapqfkfkeirhvgpdvclhlvgasthhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2g6vA (A:)
tlyiqgqdeyymaralklaqrgrftthpnpnvgcvivkdgeivgegyhqragephaevha
lrmagekakgatayvtlepcpccdaliaagvarvvasmqdpnpqvagrglyrlqqagidv
shglmmseaeqlnkgflkrmrtgfpyiqlklgasldgrtamesqwitspqarrdvqllra
qshailtssatvladdpaltvrwseldeqtqalypqqnlrqpirividsqnrvtpvhriv
qqpgetwfartqedsrewpetvrtllipehkghldlvvlmmqlgkqqinsiwveagptla
gallqaglvdelivyiapkllgsdarglctlpgpqfkfkeirhvgpdvclhlvga

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2g6vB (B:)
mdykddddkgsstslykkagsetlyiqgqdeyymaralklaqrgrftthpnpnvgcvivk
dgeivgegyhqragephaevhalrmagekakgatayvtlepcshhgrtppccdaliaagv
arvvasmqdpnpqvagrglyrlqqagidvshglmmseaeqlnkgflkrmrtgfpyiqlkl
gasldgrtamasgesqwitspqarrdvqllraqshailtssatvladdpaltvrwselde
qtqalypqqnlrqpirividsqnrvtpvhrivqqpgetwfartqedsrewpetvrtllip
ehkghldlvvlmmqlgkqqinsiwveagptlagallqaglvdelivyiapkllgsdargl
ctlpglekladapqfkfkeirhvgpdvclhlvgasthhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2g6vB (B:)
tlyiqgqdeyymaralklaqrgrftthpnpnvgcvivkdgeivgegyhqragephaevha
lrmagekakgatayvtlepcsdaliaagvarvvasmqdpnpqvagrglyrlqqagidvsh
glmmseaeqlnkgflkrmrtgfpyiqlklgasldgrtamasgesqwitspqarrdvqllr
aqshailtssatvladdpaltvrwseldeqtqalypqqnlrqpirividsqnrvtpvhri
vqqpgetwfartqedsrewpetvrtllipehkghldlvvlmmqlgkqqinsiwveagptl
agallqaglvdelivyiapkllgsdarglctlpglekladapqfkfkeirhvgpdvclhl
vga