PDB entry 4eg2

View 4eg2 on RCSB PDB site
Description: 2.2 Angstrom Crystal Structure of Cytidine deaminase from Vibrio cholerae in Complex with Zinc and Uridine
Class: hydrolase
Keywords: Cytidine deaminase, UMP synthesis, ZN binding, Hydrolase, Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID
Deposited on 2012-03-30, released 2012-05-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cytidine deaminase
    Species: Vibrio cholerae [TaxId:666]
    Gene: cdd, VC_1231
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KSM5 (3-297)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d4eg2a1, d4eg2a2, d4eg2a3
  • Chain 'B':
    Compound: Cytidine deaminase
    Species: Vibrio cholerae [TaxId:666]
    Gene: cdd, VC_1231
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KSM5 (3-297)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d4eg2b1, d4eg2b2, d4eg2b3
  • Chain 'C':
    Compound: Cytidine deaminase
    Species: Vibrio cholerae [TaxId:666]
    Gene: cdd, VC_1231
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KSM5 (3-297)
      • expression tag (2)
    Domains in SCOPe 2.08: d4eg2c1, d4eg2c2, d4eg2c3
  • Chain 'D':
    Compound: Cytidine deaminase
    Species: Vibrio cholerae [TaxId:666]
    Gene: cdd, VC_1231
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KSM5 (3-297)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d4eg2d1, d4eg2d2, d4eg2d3
  • Chain 'E':
    Compound: Cytidine deaminase
    Species: Vibrio cholerae [TaxId:666]
    Gene: cdd, VC_1231
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KSM5 (3-297)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d4eg2e1, d4eg2e2, d4eg2e3
  • Chain 'F':
    Compound: Cytidine deaminase
    Species: Vibrio cholerae [TaxId:666]
    Gene: cdd, VC_1231
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KSM5 (3-297)
      • expression tag (2)
    Domains in SCOPe 2.08: d4eg2f1, d4eg2f2, d4eg2f3
  • Chain 'G':
    Compound: Cytidine deaminase
    Species: Vibrio cholerae [TaxId:666]
    Gene: cdd, VC_1231
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KSM5 (3-297)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d4eg2g1, d4eg2g2, d4eg2g3
  • Chain 'H':
    Compound: Cytidine deaminase
    Species: Vibrio cholerae [TaxId:666]
    Gene: cdd, VC_1231
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KSM5 (3-297)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d4eg2h1, d4eg2h2, d4eg2h3
  • Heterogens: ZN, URI, ACT, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4eg2A (A:)
    snamrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvall
    piaaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgek
    gvaditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglm
    spvnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnps
    lpplqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

    Sequence, based on observed residues (ATOM records): (download)
    >4eg2A (A:)
    namrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvallp
    iaaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgekg
    vaditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglms
    pvnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnpsl
    pplqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4eg2B (B:)
    snamrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvall
    piaaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgek
    gvaditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglm
    spvnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnps
    lpplqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

    Sequence, based on observed residues (ATOM records): (download)
    >4eg2B (B:)
    namrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvallp
    iaaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgekg
    vaditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglms
    pvnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnpsl
    pplqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4eg2C (C:)
    snamrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvall
    piaaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgek
    gvaditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglm
    spvnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnps
    lpplqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

    Sequence, based on observed residues (ATOM records): (download)
    >4eg2C (C:)
    amrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvallpi
    aaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgekgv
    aditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglmsp
    vnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnpslp
    plqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4eg2D (D:)
    snamrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvall
    piaaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgek
    gvaditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglm
    spvnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnps
    lpplqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

    Sequence, based on observed residues (ATOM records): (download)
    >4eg2D (D:)
    namrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvallp
    iaaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgekg
    vaditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglms
    pvnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnpsl
    pplqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4eg2E (E:)
    snamrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvall
    piaaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgek
    gvaditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglm
    spvnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnps
    lpplqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

    Sequence, based on observed residues (ATOM records): (download)
    >4eg2E (E:)
    namrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvallp
    iaaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgekg
    vaditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglms
    pvnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnpsl
    pplqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >4eg2F (F:)
    snamrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvall
    piaaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgek
    gvaditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglm
    spvnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnps
    lpplqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

    Sequence, based on observed residues (ATOM records): (download)
    >4eg2F (F:)
    amrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvallpi
    aaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgekgv
    aditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglmsp
    vnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnpslp
    plqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >4eg2G (G:)
    snamrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvall
    piaaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgek
    gvaditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglm
    spvnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnps
    lpplqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

    Sequence, based on observed residues (ATOM records): (download)
    >4eg2G (G:)
    namrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvallp
    iaaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgekg
    vaditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglms
    pvnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnpsl
    pplqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >4eg2H (H:)
    snamrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvall
    piaaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgek
    gvaditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglm
    spvnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnps
    lpplqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl
    

    Sequence, based on observed residues (ATOM records): (download)
    >4eg2H (H:)
    namrnrieqalqqmpasfapylrelvlakdfdatfsaeqyqqlltlsgledadlrvallp
    iaaaysyapisefyvgaivrgisgrlylganmeftgaqlgqtvhaeqcaishawmkgekg
    vaditinfspcghcrqfmnelttasslkiqlpkraaktlqeylpesfgpadlgidsglms
    pvnhgktsdddeeliqqalramnishspytqnfsgvalkmrsgaiylgayaenaafnpsl
    pplqvalaqammmgesfedieaaalvesatgkishladtqatlevinpdiplsylsl