Lineage for Protein: Melibiase

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2826025Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2829818Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2829819Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
    members of the family may contain various insert subdomains
    in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain
  6. 2830250Protein Melibiase [75064] (4 species)

Species:

  1. 2830251Chicken (Gallus gallus) [TaxId:9031] [75065] (2 PDB entries)
    alpha-N-acetylgalactosaminidase
    1. Domain for 1ktb:
      • 2830252Domain d1ktba2: 1ktb A:1-293 [72961]
        Other proteins in same PDB: d1ktba1
        complexed with acy, gol, nag, so4
        missing some secondary structures that made up less than one-third of the common domain
    2. Domain for 1ktc:
      • 2830253Domain d1ktca2: 1ktc A:1-293 [72963]
        Other proteins in same PDB: d1ktca1
        complexed with acy, gol, nag, nga, so4
        missing some secondary structures that made up less than one-third of the common domain
  2. 2830254Human (Homo sapiens) [TaxId:9606] [102062] (21 PDB entries)
    alpha-galactosidase A
    1. Domains for 1r46:
      1. 2830293Domain d1r46a2: 1r46 A:32-323 [96974]
        Other proteins in same PDB: d1r46a1, d1r46b1
        complexed with edo, nag
        missing some secondary structures that made up less than one-third of the common domain
      2. 2830294Domain d1r46b2: 1r46 B:32-323 [96976]
        Other proteins in same PDB: d1r46a1, d1r46b1
        complexed with edo, nag
        missing some secondary structures that made up less than one-third of the common domain
    2. Domains for 1r47:
      1. 2830295Domain d1r47a2: 1r47 A:32-323 [96978]
        Other proteins in same PDB: d1r47a1, d1r47b1
        complexed with edo, gal
        missing some secondary structures that made up less than one-third of the common domain
      2. 2830296Domain d1r47b2: 1r47 B:32-323 [96980]
        Other proteins in same PDB: d1r47a1, d1r47b1
        complexed with edo, gal
        missing some secondary structures that made up less than one-third of the common domain
    3. Domains for 3gxn:
      1. 2830291Domain d3gxna1: 3gxn A:32-323 [246384]
        Other proteins in same PDB: d3gxna2, d3gxnb2
        automated match to d3hg3a1
        complexed with so4

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830292Domain d3gxnb1: 3gxn B:32-323 [246386]
        Other proteins in same PDB: d3gxna2, d3gxnb2
        automated match to d3hg3a1
        complexed with so4

        missing some secondary structures that made up less than one-third of the common domain
    4. Domains for 3gxp:
      1. 2830277Domain d3gxpa1: 3gxp A:32-323 [210722]
        Other proteins in same PDB: d3gxpa2, d3gxpb2
        automated match to d1r46a2
        protein/RNA complex; complexed with gla, man, nag, so4, tam

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830278Domain d3gxpb1: 3gxp B:32-323 [210724]
        Other proteins in same PDB: d3gxpa2, d3gxpb2
        automated match to d1r46b2
        protein/RNA complex; complexed with gla, man, nag, so4, tam

        missing some secondary structures that made up less than one-third of the common domain
    5. Domains for 3gxt:
      1. 2830287Domain d3gxta1: 3gxt A:32-323 [210726]
        Other proteins in same PDB: d3gxta2, d3gxtb2
        automated match to d1r46a2
        protein/RNA complex; complexed with nag, noj, so4

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830288Domain d3gxtb1: 3gxt B:32-323 [210728]
        Other proteins in same PDB: d3gxta2, d3gxtb2
        automated match to d1r46b2
        protein/RNA complex; complexed with nag, noj, so4

        missing some secondary structures that made up less than one-third of the common domain
    6. Domains for 3hg2:
      1. 2830271Domain d3hg2a1: 3hg2 A:32-323 [211016]
        Other proteins in same PDB: d3hg2a2, d3hg2b2
        automated match to d1r46a2
        complexed with acy, gal, nag, so4

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830272Domain d3hg2b1: 3hg2 B:32-323 [211018]
        Other proteins in same PDB: d3hg2a2, d3hg2b2
        automated match to d1r46b2
        complexed with acy, gal, nag, so4

        missing some secondary structures that made up less than one-third of the common domain
    7. Domains for 3hg3:
      1. 2830255Domain d3hg3a1: 3hg3 A:32-323 [232468]
        Other proteins in same PDB: d3hg3a2, d3hg3b2
        automated match to d1r46a2
        complexed with 2pe, nag

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830256Domain d3hg3b1: 3hg3 B:32-323 [232470]
        Other proteins in same PDB: d3hg3a2, d3hg3b2
        automated match to d1r46a2
        complexed with 2pe, nag

        missing some secondary structures that made up less than one-third of the common domain
    8. Domains for 3hg4:
      1. 2830275Domain d3hg4a1: 3hg4 A:32-323 [211020]
        Other proteins in same PDB: d3hg4a2, d3hg4b2
        automated match to d1r46a2
        complexed with 7jz, acy, gal, nag, so4

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830276Domain d3hg4b1: 3hg4 B:32-323 [211022]
        Other proteins in same PDB: d3hg4a2, d3hg4b2
        automated match to d1r46b2
        complexed with 7jz, acy, gal, nag, so4

        missing some secondary structures that made up less than one-third of the common domain
    9. Domains for 3hg5:
      1. 2830273Domain d3hg5a1: 3hg5 A:32-323 [211024]
        Other proteins in same PDB: d3hg5a2, d3hg5b2
        automated match to d1r46a2
        complexed with acy, gal, gla, nag, so4

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830274Domain d3hg5b1: 3hg5 B:32-323 [211026]
        Other proteins in same PDB: d3hg5a2, d3hg5b2
        automated match to d1r46b2
        complexed with acy, gal, gla, nag, so4

        missing some secondary structures that made up less than one-third of the common domain
    10. Domains for 3lx9:
      1. 2830261Domain d3lx9a1: 3lx9 A:32-323 [232854]
        Other proteins in same PDB: d3lx9a2, d3lx9b2
        automated match to d1r46a2
        complexed with a2g, nag

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830262Domain d3lx9b1: 3lx9 B:32-323 [232855]
        Other proteins in same PDB: d3lx9a2, d3lx9b2
        automated match to d1r46a2
        complexed with a2g, nag

        missing some secondary structures that made up less than one-third of the common domain
    11. Domains for 3lxa:
      1. 2830289Domain d3lxaa1: 3lxa A:32-323 [247529]
        Other proteins in same PDB: d3lxaa2, d3lxab2
        automated match to d3hg3a1
        complexed with gla, nag

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830290Domain d3lxab1: 3lxa B:32-323 [247531]
        Other proteins in same PDB: d3lxaa2, d3lxab2
        automated match to d3hg3a1
        complexed with gla, nag

        missing some secondary structures that made up less than one-third of the common domain
    12. Domains for 3lxb:
      1. 2830285Domain d3lxba1: 3lxb A:32-323 [247533]
        Other proteins in same PDB: d3lxba2, d3lxbb2
        automated match to d3lx9a1
        complexed with gol, nag

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830286Domain d3lxbb1: 3lxb B:32-323 [247535]
        Other proteins in same PDB: d3lxba2, d3lxbb2
        automated match to d3lx9a1
        complexed with gol, nag

        missing some secondary structures that made up less than one-third of the common domain
    13. Domains for 3lxc:
      1. 2830279Domain d3lxca1: 3lxc A:32-323 [247537]
        Other proteins in same PDB: d3lxca2, d3lxcb2
        automated match to d3lx9a1
        complexed with gol, nag

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830280Domain d3lxcb1: 3lxc B:32-323 [247539]
        Other proteins in same PDB: d3lxca2, d3lxcb2
        automated match to d3lx9a1
        complexed with gol, nag

        missing some secondary structures that made up less than one-third of the common domain
    14. Domains for 3s5y:
      1. 2830267Domain d3s5ya1: 3s5y A:32-323 [216219]
        Other proteins in same PDB: d3s5ya2, d3s5yb2
        automated match to d1r46a2
        complexed with 2pe, acy, dgj, edo, nag

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830268Domain d3s5yb1: 3s5y B:32-323 [216221]
        Other proteins in same PDB: d3s5ya2, d3s5yb2
        automated match to d1r46b2
        complexed with 2pe, acy, dgj, edo, nag

        missing some secondary structures that made up less than one-third of the common domain
    15. Domains for 3s5z:
      1. 2830257Domain d3s5za1: 3s5z A:32-323 [216223]
        Other proteins in same PDB: d3s5za2, d3s5zb2
        automated match to d1r46a2
        complexed with gal, gla, gol, nag

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830258Domain d3s5zb1: 3s5z B:32-323 [216225]
        Other proteins in same PDB: d3s5za2, d3s5zb2
        automated match to d1r46a2
        complexed with gal, gla, gol, nag

        missing some secondary structures that made up less than one-third of the common domain
    16. Domains for 3tv8:
      1. 2830283Domain d3tv8a1: 3tv8 A:32-323 [250036]
        Other proteins in same PDB: d3tv8a2, d3tv8b2
        automated match to d3hg3a1
        complexed with 2pe, dgj, nag, so4

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830284Domain d3tv8b1: 3tv8 B:32-323 [250038]
        Other proteins in same PDB: d3tv8a2, d3tv8b2
        automated match to d3hg3a1
        complexed with 2pe, dgj, nag, so4

        missing some secondary structures that made up less than one-third of the common domain
    17. Domains for 4nxs:
      1. 2830281Domain d4nxsa1: 4nxs A:32-323 [257194]
        Other proteins in same PDB: d4nxsa2, d4nxsb2
        automated match to d1r46a2
        complexed with 2oz, nag, so4

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830282Domain d4nxsb1: 4nxs B:32-323 [257196]
        Other proteins in same PDB: d4nxsa2, d4nxsb2
        automated match to d1r46b2
        complexed with 2oz, nag, so4

        missing some secondary structures that made up less than one-third of the common domain
    18. Domains for 6ibk:
      1. 2830259Domain d6ibka1: 6ibk A:32-323 [375366]
        Other proteins in same PDB: d6ibka2, d6ibkb2
        automated match to d1r46a2
        complexed with act, edo, nag, peg, so4, ytw

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830260Domain d6ibkb1: 6ibk B:32-323 [375372]
        Other proteins in same PDB: d6ibka2, d6ibkb2
        automated match to d1r46b2
        complexed with act, edo, nag, peg, so4, ytw

        missing some secondary structures that made up less than one-third of the common domain
    19. Domains for 6ibm:
      1. 2830265Domain d6ibma1: 6ibm A:32-323 [375378]
        Other proteins in same PDB: d6ibma2, d6ibmb2
        automated match to d1r46a2
        complexed with act, edo, hf8, peg, so4

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830266Domain d6ibmb1: 6ibm B:32-323 [375347]
        Other proteins in same PDB: d6ibma2, d6ibmb2
        automated match to d1r46b2
        complexed with act, edo, hf8, peg, so4

        missing some secondary structures that made up less than one-third of the common domain
    20. Domains for 6ibr:
      1. 2830269Domain d6ibra1: 6ibr A:32-323 [375362]
        Other proteins in same PDB: d6ibra2, d6ibrb2
        automated match to d1r46a2
        complexed with act, edo, hbe, nag, peg, so4

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830270Domain d6ibrb1: 6ibr B:32-323 [375368]
        Other proteins in same PDB: d6ibra2, d6ibrb2
        automated match to d1r46b2
        complexed with act, edo, hbe, nag, peg, so4

        missing some secondary structures that made up less than one-third of the common domain
    21. Domains for 6ibt:
      1. 2830263Domain d6ibta1: 6ibt A:32-323 [375351]
        Other proteins in same PDB: d6ibta2, d6ibtb2
        automated match to d1r46a2
        complexed with act, edo, h9t, nag, peg, so4

        missing some secondary structures that made up less than one-third of the common domain
      2. 2830264Domain d6ibtb1: 6ibt B:32-323 [375353]
        Other proteins in same PDB: d6ibta2, d6ibtb2
        automated match to d1r46b2
        complexed with act, edo, h9t, nag, peg, so4

        missing some secondary structures that made up less than one-third of the common domain
  3. 2830297Rice (Oryza sativa) [TaxId:4530] [89468] (1 PDB entry)
    alpha-galactosidase
    • Domain for 1uas:
      • 2830298Domain d1uasa2: 1uas A:1-273 [88389]
        Other proteins in same PDB: d1uasa1
        complexed with gla, gol, pt, so4
        missing some secondary structures that made up less than one-third of the common domain
  4. 2830299Trichoderma reesei [TaxId:51453] [110349] (2 PDB entries)
    Alpha-galactosidase agl1
    Uniprot Q92456
    1. Domain for 1szn:
      • 2830300Domain d1szna2: 1szn A:1-314 [106163]
        Other proteins in same PDB: d1szna1
        complexed with gol
        missing some secondary structures that made up less than one-third of the common domain
    2. Domain for 1t0o:
      • 2830301Domain d1t0oa2: 1t0o A:1-314 [112212]
        Other proteins in same PDB: d1t0oa1
        complexed with gal
        missing some secondary structures that made up less than one-third of the common domain

More info for Protein Melibiase from c.1.8.1: Amylase, catalytic domain

Timeline for Protein Melibiase from c.1.8.1: Amylase, catalytic domain: