SCOPe 2.08: Protein: Xylanase

Lineage for Protein: Xylanase

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)
Family c.1.8.3: beta-glycanases [51487] (27 proteins)
consist of a number of sequence families
Protein Xylanase [51488] (6 species)

Species:

Bacillus stearothermophilus, Ixt6 [TaxId:1422] [102063] (7 PDB entries)
intra-cellular xylanase
1. Domains for 1n82:
  1. Domain d1n82a_: 1n82 A: [91703]
    complexed with gol, na
  2. Domain d1n82b_: 1n82 B: [91704]
    complexed with gol, na
2. Domains for 2q8x:
  1. Domain d2q8xa_: 2q8x A: [167481]
    automated match to d1n82a_
    complexed with gol, na
  2. Domain d2q8xb_: 2q8x B: [167482]
    automated match to d1n82a_
    complexed with gol, na
3. Domains for 3ms8:
  1. Domain d3ms8a_: 3ms8 A: [181521]
    automated match to d1n82a_
    complexed with gol, na
  2. Domain d3ms8b_: 3ms8 B: [181522]
    automated match to d1n82a_
    complexed with gol, na
4. Domains for 3msd:
  1. Domain d3msda_: 3msd A: [181526]
    automated match to d1n82a_
    complexed with act, gol, na
  2. Domain d3msdb_: 3msd B: [181527]
    automated match to d1n82a_
    complexed with act, gol, na
5. Domains for 3msg:
  1. Domain d3msga_: 3msg A: [181528]
    automated match to d1n82a_
    complexed with act, gol, na, xyp
  2. Domain d3msgb_: 3msg B: [181529]
    automated match to d1n82a_
    complexed with act, gol, na, xyp
6. Domains for 3mua:
  1. Domain d3muaa_: 3mua A: [181561]
    automated match to d1n82a_
    complexed with act, gol, na, xyp
  2. Domain d3muab_: 3mua B: [181562]
    automated match to d1n82a_
    complexed with act, gol, na, xyp
7. Domains for 3mui:
  1. Domain d3muia_: 3mui A: [181567]
    automated match to d1n82a_
    complexed with gol, na
  2. Domain d3muib_: 3mui B: [181568]
    automated match to d1n82a_
    complexed with gol, na
Bacillus stearothermophilus, Xt6 [TaxId:1422] [69386] (8 PDB entries)
Uniprot P40943
1. Domain for 1hiz:
  - Domain d1hiza_: 1hiz A: [65841]
    complexed with gla, glc, so4
2. Domain for 1r85:
  - Domain d1r85a_: 1r85 A: [104839]
    complexed with cl, gol, so4, zn
3. Domain for 1r86:
  - Domain d1r86a1: 1r86 A:9-379 [118744]
    complexed with cl, so4, zn; mutant
4. Domain for 1r87:
  - Domain d1r87a_: 1r87 A: [104840]
    complexed with cl, so4, zn
5. Domain for 3mmd:
  - Domain d3mmda_: 3mmd A: [181418]
    automated match to d1hiza_
    complexed with cl, na, zn; mutant
6. Domain for 4prw:
  - Domain d4prwa_: 4prw A: [269755]
    automated match to d1hiza_
    complexed with cl, so4, zn
7. Domain for 4pud:
  - Domain d4puda_: 4pud A: [270380]
    automated match to d3mmda_
    complexed with cl, zn; mutant
8. Domain for 4pue:
  - Domain d4puea_: 4pue A: [270379]
    automated match to d3mmda_
    complexed with cl, zn; mutant
Cellvibrio mixtus [TaxId:39650] [102064] (4 PDB entries)
1. Domain for 1uqy:
  - Domain d1uqya1: 1uqy A:26-370 [99802]
    Other proteins in same PDB: d1uqya2
    complexed with mg; mutant
2. Domain for 1uqz:
  - Domain d1uqza1: 1uqz A:26-370 [99803]
    Other proteins in same PDB: d1uqza2
    complexed with cl, mg; mutant
3. Domain for 1ur1:
  - Domain d1ur1a1: 1ur1 A:26-370 [99804]
    Other proteins in same PDB: d1ur1a2
    complexed with cl, mg; mutant
4. Domain for 1ur2:
  - Domain d1ur2a1: 1ur2 A:25-370 [99805]
    Other proteins in same PDB: d1ur2a2
    complexed with cl, mg; mutant
Clostridium thermocellum, XynZ [TaxId:1515] [51489] (1 PDB entry)
belongs to family F
- Domains for 1xyz:
  1. Domain d1xyza_: 1xyz A: [28804]
  2. Domain d1xyzb_: 1xyz B: [28805]
Fungus (Penicillium simplicissimum) [TaxId:69488] [51490] (1 PDB entry)
belongs to family 10
- Domain for 1bg4:
  - Domain d1bg4a_: 1bg4 A: [28806]
    complexed with gol, na, trs
Thermotoga maritima [TaxId:2336] [141772] (1 PDB entry)
Uniprot Q9WXS5 23-346
- Domain for 1vbr:
  - Domain d1vbra1: 1vbr A:517-840 [119961]
    Other proteins in same PDB: d1vbrb_
    complexed with acy