SCOPe 2.08: Protein: Rhinovirus coat proteins

Lineage for Protein: Rhinovirus coat proteins

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)

Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)

Protein Rhinovirus coat proteins [49670] (5 species)

Species:

Human rhinovirus 16, (HRV-16) [TaxId:31708] [49672] (9 PDB entries)
1. Domains for 1aym:
  1. Domain d1aym.1: 1aym 4:,2: [83036]
    complexed with dao, myr, zn
  2. Domain d1aym1_: 1aym 1: [23519]
    complexed with dao, myr, zn
  3. Domain d1aym3_: 1aym 3: [23521]
    complexed with dao, myr, zn
2. Domains for 1ayn:
  1. Domain d1ayn.1: 1ayn 4:,2: [83037]
    complexed with dao, myr, zn
  2. Domain d1ayn1_: 1ayn 1: [23534]
    complexed with dao, myr, zn
  3. Domain d1ayn3_: 1ayn 3: [23536]
    complexed with dao, myr, zn
3. Domains for 1c8m:
  1. Domain d1c8m.1: 1c8m 4:,2: [83044]
    complexed with w11, zn
  2. Domain d1c8m1_: 1c8m 1: [23528]
    complexed with w11, zn
  3. Domain d1c8m3_: 1c8m 3: [23530]
    complexed with w11, zn
4. Domains for 1ncr:
  1. Domain d1ncr.1: 1ncr D:,B: [91805]
    complexed with myr, w11, zn
  2. Domain d1ncra_: 1ncr A: [91806]
    complexed with myr, w11, zn
  3. Domain d1ncrc_: 1ncr C: [91807]
    complexed with myr, w11, zn
5. Domains for 1nd2:
  1. Domain d1nd2.1: 1nd2 D:,B: [91809]
    complexed with myr, zn
  2. Domain d1nd2a_: 1nd2 A: [91810]
    complexed with myr, zn
  3. Domain d1nd2c_: 1nd2 C: [91811]
    complexed with myr, zn
6. Domains for 1nd3:
  1. Domain d1nd3.1: 1nd3 D:,B: [91812]
    complexed with w11, zn
  2. Domain d1nd3a_: 1nd3 A: [91813]
    complexed with w11, zn
  3. Domain d1nd3c_: 1nd3 C: [91814]
    complexed with w11, zn
7. Domains for 1qju:
  1. Domain d1qju.1: 1qju 4:,2: [83105]
    protein/RNA complex; complexed with myr, w01, zn
  2. Domain d1qju1_: 1qju 1: [23522]
    protein/RNA complex; complexed with myr, w01, zn
  3. Domain d1qju3_: 1qju 3: [23524]
    protein/RNA complex; complexed with myr, w01, zn
8. Domains for 1qjx:
  1. Domain d1qjx.1: 1qjx 4:,2: [83106]
    protein/RNA complex; complexed with myr, w02, zn
  2. Domain d1qjx1_: 1qjx 1: [23531]
    protein/RNA complex; complexed with myr, w02, zn
  3. Domain d1qjx3_: 1qjx 3: [23533]
    protein/RNA complex; complexed with myr, w02, zn
9. Domains for 1qjy:
  1. Domain d1qjy.1: 1qjy 4:,2: [83107]
    protein/RNA complex; complexed with myr, w03, zn
  2. Domain d1qjy1_: 1qjy 1: [23525]
    protein/RNA complex; complexed with myr, w03, zn
  3. Domain d1qjy3_: 1qjy 3: [23527]
    protein/RNA complex; complexed with myr, w03, zn
Human rhinovirus 3, (HRV-3) [TaxId:44130] [49675] (1 PDB entry)
- Domains for 1rhi:
  1. Domain d1rhi.1: 1rhi 4:,2: [83112]
    complexed with ca
  2. Domain d1rhi1_: 1rhi 1: [23552]
    complexed with ca
  3. Domain d1rhi3_: 1rhi 3: [23554]
    complexed with ca
Human rhinovirus A 1A (HRV-1A) [TaxId:12134] [49673] (4 PDB entries)
1. Domains for 1r1a:
  1. Domain d1r1a.1: 1r1a 4:,2: [83111]
  2. Domain d1r1a1_: 1r1a 1: [23537]
  3. Domain d1r1a3_: 1r1a 3: [23539]
2. Domains for 2hwd:
  1. Domain d2hwd.1: 2hwd 4:,2: [83133]
    complexed with w91
  2. Domain d2hwd1_: 2hwd 1: [23540]
    complexed with w91
  3. Domain d2hwd3_: 2hwd 3: [23542]
    complexed with w91
3. Domains for 2hwe:
  1. Domain d2hwe.1: 2hwe 4:,2: [83134]
    complexed with w54
  2. Domain d2hwe1_: 2hwe 1: [23543]
    complexed with w54
  3. Domain d2hwe3_: 2hwe 3: [23545]
    complexed with w54
4. Domains for 2hwf:
  1. Domain d2hwf.1: 2hwf 4:,2: [83135]
    complexed with jen
  2. Domain d2hwf1_: 2hwf 1: [23546]
    complexed with jen
  3. Domain d2hwf3_: 2hwf 3: [23548]
    complexed with jen
Human rhinovirus A 2 (HRV-2) [TaxId:12130] [49674] (2 PDB entries)
1. Domains for 1fpn:
  1. Domain d1fpn.1: 1fpn 4:,2: [83053]
    complexed with dao
  2. Domain d1fpn1_: 1fpn 1: [23549]
    complexed with dao
  3. Domain d1fpn3_: 1fpn 3: [23551]
    complexed with dao
2. Domains for 1v9u:
  1. Domain d1v9u.1: 1v9u 4:,2: [100550]
    Other proteins in same PDB: d1v9u5_
    complexed with ca, dao
  2. Domain d1v9u1_: 1v9u 1: [100551]
    Other proteins in same PDB: d1v9u5_
    complexed with ca, dao
  3. Domain d1v9u3_: 1v9u 3: [100552]
    Other proteins in same PDB: d1v9u5_
    complexed with ca, dao
Human rhinovirus B 14 (HRV-14) [TaxId:12131] [49671] (36 PDB entries)
1. Domains for 1hri:
  1. Domain d1hri.1: 1hri 4:,2: [83062]
    complexed with s57
  2. Domain d1hri1_: 1hri 1: [23474]
    complexed with s57
  3. Domain d1hri3_: 1hri 3: [23476]
    complexed with s57
2. Domains for 1hrv:
  1. Domain d1hrv.1: 1hrv 4:,2: [83063]
    complexed with sdz
  2. Domain d1hrv1_: 1hrv 1: [23477]
    complexed with sdz
  3. Domain d1hrv3_: 1hrv 3: [23479]
    complexed with sdz
3. Domains for 1k5m:
  1. Domain d1k5m.1: 1k5m D:,B: [83093]
    grafted HIV-1 v3 loop in chain B
    complexed with sph
  2. Domain d1k5ma_: 1k5m A: [72078]
    grafted HIV-1 v3 loop in chain B
    complexed with sph
  3. Domain d1k5mc_: 1k5m C: [72080]
    grafted HIV-1 v3 loop in chain B
    complexed with sph
4. Domains for 1na1:
  1. Domain d1na1.1: 1na1 D:,B: [91742]
    complexed with w11
  2. Domain d1na1a_: 1na1 A: [91743]
    complexed with w11
  3. Domain d1na1c_: 1na1 C: [91744]
    complexed with w11
5. Domains for 1ncq:
  1. Domain d1ncq.1: 1ncq D:,B: [91802]
    complexed with w11
  2. Domain d1ncqa_: 1ncq A: [91803]
    complexed with w11
  3. Domain d1ncqc_: 1ncq C: [91804]
    complexed with w11
6. Domains for 1r08:
  1. Domain d1r08.1: 1r08 4:,2: [83109]
    complexed with w42
  2. Domain d1r081_: 1r08 1: [23483]
    complexed with w42
  3. Domain d1r083_: 1r08 3: [23485]
    complexed with w42
7. Domains for 1r09:
  1. Domain d1r09.1: 1r09 4:,2: [83110]
    complexed with dms, jen
  2. Domain d1r091_: 1r09 1: [23441]
    complexed with dms, jen
  3. Domain d1r093_: 1r09 3: [23443]
    complexed with dms, jen
8. Domains for 1rmu:
  1. Domain d1rmu.1: 1rmu 4:,2: [83113]
    complexed with trs; mutant
  2. Domain d1rmu1_: 1rmu 1: [23504]
    complexed with trs; mutant
  3. Domain d1rmu3_: 1rmu 3: [23506]
    complexed with trs; mutant
9. Domains for 1ruc:
  1. Domain d1ruc.1: 1ruc 4:,2: [83114]
    complexed with w35; mutant
  2. Domain d1ruc1_: 1ruc 1: [23513]
    complexed with w35; mutant
  3. Domain d1ruc3_: 1ruc 3: [23515]
    complexed with w35; mutant
10. Domains for 1rud:
  1. Domain d1rud.1: 1rud 4:,2: [83115]
    complexed with w84; mutant
  2. Domain d1rud1_: 1rud 1: [23444]
    complexed with w84; mutant
  3. Domain d1rud3_: 1rud 3: [23446]
    complexed with w84; mutant
11. Domains for 1rue:
  1. Domain d1rue.1: 1rue 4:,2: [83116]
    complexed with w35; mutant
  2. Domain d1rue1_: 1rue 1: [23468]
    complexed with w35; mutant
  3. Domain d1rue3_: 1rue 3: [23470]
    complexed with w35; mutant
12. Domains for 1ruf:
  1. Domain d1ruf.1: 1ruf 4:,2: [83117]
    mutant
  2. Domain d1ruf1_: 1ruf 1: [23471]
    mutant
  3. Domain d1ruf3_: 1ruf 3: [23473]
    mutant
13. Domains for 1rug:
  1. Domain d1rug.1: 1rug 4:,2: [83118]
    complexed with w35; mutant
  2. Domain d1rug1_: 1rug 1: [23495]
    complexed with w35; mutant
  3. Domain d1rug3_: 1rug 3: [23497]
    complexed with w35; mutant
14. Domains for 1ruh:
  1. Domain d1ruh.1: 1ruh 4:,2: [83119]
    complexed with w84; mutant
  2. Domain d1ruh1_: 1ruh 1: [23459]
    complexed with w84; mutant
  3. Domain d1ruh3_: 1ruh 3: [23461]
    complexed with w84; mutant
15. Domains for 1rui:
  1. Domain d1rui.1: 1rui 4:,2: [83120]
    complexed with w84; mutant
  2. Domain d1rui1_: 1rui 1: [23462]
    complexed with w84; mutant
  3. Domain d1rui3_: 1rui 3: [23464]
    complexed with w84; mutant
16. Domains for 1ruj:
  1. Domain d1ruj.1: 1ruj 4:,2: [83121]
    mutant
  2. Domain d1ruj1_: 1ruj 1: [23498]
    mutant
  3. Domain d1ruj3_: 1ruj 3: [23500]
    mutant
17. Domains for 1rvf:
  1. Domain d1rvf.1: 1rvf 4:,2: [83122]
    Other proteins in same PDB: d1rvfh_, d1rvfl_
    protein/RNA complex
  2. Domain d1rvf1_: 1rvf 1: [23516]
    Other proteins in same PDB: d1rvfh_, d1rvfl_
    protein/RNA complex
  3. Domain d1rvf3_: 1rvf 3: [23518]
    Other proteins in same PDB: d1rvfh_, d1rvfl_
    protein/RNA complex
18. Domains for 1vrh:
  1. Domain d1vrh.1: 1vrh 4:,2: [83130]
    protein/RNA complex; complexed with sd8
  2. Domain d1vrh1_: 1vrh 1: [23465]
    protein/RNA complex; complexed with sd8
  3. Domain d1vrh3_: 1vrh 3: [23467]
    protein/RNA complex; complexed with sd8
19. Domains for 2hwb:
  1. Domain d2hwb.1: 2hwb 4:,2: [83131]
    complexed with w91
  2. Domain d2hwb1_: 2hwb 1: [23507]
    complexed with w91
  3. Domain d2hwb3_: 2hwb 3: [23509]
    complexed with w91
20. Domains for 2hwc:
  1. Domain d2hwc.1: 2hwc 4:,2: [83132]
    complexed with w54
  2. Domain d2hwc1_: 2hwc 1: [23510]
    complexed with w54
  3. Domain d2hwc3_: 2hwc 3: [23512]
    complexed with w54
21. Domains for 2r04:
  1. Domain d2r04.1: 2r04 4:,2: [83138]
    complexed with w71
  2. Domain d2r041_: 2r04 1: [23486]
    complexed with w71
  3. Domain d2r043_: 2r04 3: [23488]
    complexed with w71
22. Domains for 2r06:
  1. Domain d2r06.1: 2r06 4:,2: [83139]
    complexed with w35
  2. Domain d2r061_: 2r06 1: [23492]
    complexed with w35
  3. Domain d2r063_: 2r06 3: [23494]
    complexed with w35
23. Domains for 2r07:
  1. Domain d2r07.1: 2r07 4:,2: [83140]
    complexed with w33
  2. Domain d2r071_: 2r07 1: [23447]
    complexed with w33
  3. Domain d2r073_: 2r07 3: [23449]
    complexed with w33
24. Domains for 2rm2:
  1. Domain d2rm2.1: 2rm2 4:,2: [83141]
    complexed with w43
  2. Domain d2rm21_: 2rm2 1: [23450]
    complexed with w43
  3. Domain d2rm23_: 2rm2 3: [23452]
    complexed with w43
25. Domains for 2rmu:
  1. Domain d2rmu.1: 2rmu 4:,2: [83142]
    mutant
  2. Domain d2rmu1_: 2rmu 1: [23501]
    mutant
  3. Domain d2rmu3_: 2rmu 3: [23503]
    mutant
26. Domains for 2rr1:
  1. Domain d2rr1.1: 2rr1 4:,2: [83143]
    complexed with w8r
  2. Domain d2rr11_: 2rr1 1: [23453]
    complexed with w8r
  3. Domain d2rr13_: 2rr1 3: [23455]
    complexed with w8r
27. Domains for 2rs1:
  1. Domain d2rs1.1: 2rs1 4:,2: [83144]
    complexed with w84
  2. Domain d2rs11_: 2rs1 1: [23456]
    complexed with w84
  3. Domain d2rs13_: 2rs1 3: [23458]
    complexed with w84
28. Domains for 2rs3:
  1. Domain d2rs3.1: 2rs3 4:,2: [83145]
    complexed with w59
  2. Domain d2rs31_: 2rs3 1: [23480]
    complexed with w59
  3. Domain d2rs33_: 2rs3 3: [23482]
    complexed with w59
29. Domains for 2rs5:
  1. Domain d2rs5.1: 2rs5 4:,2: [83146]
    complexed with w56
  2. Domain d2rs51_: 2rs5 1: [23489]
    complexed with w56
  3. Domain d2rs53_: 2rs5 3: [23491]
    complexed with w56
30. Domains for 4rhv:
  1. Domain d4rhv.1: 4rhv 4:,2: [83147]
  2. Domain d4rhv1_: 4rhv 1: [23438]
  3. Domain d4rhv3_: 4rhv 3: [23440]
31. Domains for 5w3e:
  1. Domain d5w3ea_: 5w3e A: [336698]
    Other proteins in same PDB: d5w3ee_, d5w3eg_
    automated match to d1k5ma_
  2. Domain d5w3eb_: 5w3e B: [336744]
    Other proteins in same PDB: d5w3ee_, d5w3eg_
    automated match to d1ncqc_
32. Domains for 5w3l:
  1. Domain d5w3la_: 5w3l A: [336702]
    Other proteins in same PDB: d5w3le_, d5w3lg_
    automated match to d1k5ma_
  2. Domain d5w3lb_: 5w3l B: [336722]
    Other proteins in same PDB: d5w3le_, d5w3lg_
    automated match to d1ncqc_
33. Domains for 5w3m:
  1. Domain d5w3ma_: 5w3m A: [336723]
    Other proteins in same PDB: d5w3me_, d5w3mg_
    automated match to d1ncqa_
  2. Domain d5w3mb_: 5w3m B: [336697]
    Other proteins in same PDB: d5w3me_, d5w3mg_
    automated match to d1ncqc_
34. Domains for 7bg6:
  1. Domain d7bg61_: 7bg6 1: [404448]
    automated match to d1ncqa_
  2. Domain d7bg63_: 7bg6 3: [404456]
    automated match to d1ncqc_
35. Domain for 7bg7:
  - Domain d7bg73_: 7bg7 3: [404478]
    Other proteins in same PDB: d7bg71_
    automated match to d1ncqc_
36. Domain for 7nuq:
  - Domain d7nuq3_: 7nuq 3: [406053]
    Other proteins in same PDB: d7nuq1_
    automated match to d1ncqc_

More info for Protein Rhinovirus coat proteins from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Timeline for Protein Rhinovirus coat proteins from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4):

Protein Rhinovirus coat proteins from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) first appeared (with stable ids) in SCOP 1.55, called Protein Rhinovirus coat protein from b.10.1.4: Animal virus proteins
Protein Rhinovirus coat proteins from b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) appears in SCOPe 2.07