SCOPe 2.08: Species: Human rhinovirus 16, (HRV-16) [TaxId: 31708]

Lineage for Species: Human rhinovirus 16, (HRV-16) [TaxId: 31708]

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)

Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)

Protein Rhinovirus coat proteins [49670] (5 species)
Species Human rhinovirus 16, (HRV-16) [TaxId:31708] [49672] (9 PDB entries)

PDB entries in Species: Human rhinovirus 16, (HRV-16) [TaxId: 31708]:

Domain(s) for 1aym:
1. Domain d1aym.1: 1aym 4:,2: [83036]
  complexed with dao, myr, zn
2. Domain d1aym1_: 1aym 1: [23519]
  complexed with dao, myr, zn
3. Domain d1aym3_: 1aym 3: [23521]
  complexed with dao, myr, zn
Domain(s) for 1ayn:
1. Domain d1ayn.1: 1ayn 4:,2: [83037]
  complexed with dao, myr, zn
2. Domain d1ayn1_: 1ayn 1: [23534]
  complexed with dao, myr, zn
3. Domain d1ayn3_: 1ayn 3: [23536]
  complexed with dao, myr, zn
Domain(s) for 1c8m:
1. Domain d1c8m.1: 1c8m 4:,2: [83044]
  complexed with w11, zn
2. Domain d1c8m1_: 1c8m 1: [23528]
  complexed with w11, zn
3. Domain d1c8m3_: 1c8m 3: [23530]
  complexed with w11, zn
Domain(s) for 1ncr:
1. Domain d1ncr.1: 1ncr D:,B: [91805]
  complexed with myr, w11, zn
2. Domain d1ncra_: 1ncr A: [91806]
  complexed with myr, w11, zn
3. Domain d1ncrc_: 1ncr C: [91807]
  complexed with myr, w11, zn
Domain(s) for 1nd2:
1. Domain d1nd2.1: 1nd2 D:,B: [91809]
  complexed with myr, zn
2. Domain d1nd2a_: 1nd2 A: [91810]
  complexed with myr, zn
3. Domain d1nd2c_: 1nd2 C: [91811]
  complexed with myr, zn
Domain(s) for 1nd3:
1. Domain d1nd3.1: 1nd3 D:,B: [91812]
  complexed with w11, zn
2. Domain d1nd3a_: 1nd3 A: [91813]
  complexed with w11, zn
3. Domain d1nd3c_: 1nd3 C: [91814]
  complexed with w11, zn
Domain(s) for 1qju:
1. Domain d1qju.1: 1qju 4:,2: [83105]
  protein/RNA complex; complexed with myr, w01, zn
2. Domain d1qju1_: 1qju 1: [23522]
  protein/RNA complex; complexed with myr, w01, zn
3. Domain d1qju3_: 1qju 3: [23524]
  protein/RNA complex; complexed with myr, w01, zn
Domain(s) for 1qjx:
1. Domain d1qjx.1: 1qjx 4:,2: [83106]
  protein/RNA complex; complexed with myr, w02, zn
2. Domain d1qjx1_: 1qjx 1: [23531]
  protein/RNA complex; complexed with myr, w02, zn
3. Domain d1qjx3_: 1qjx 3: [23533]
  protein/RNA complex; complexed with myr, w02, zn
Domain(s) for 1qjy:
1. Domain d1qjy.1: 1qjy 4:,2: [83107]
  protein/RNA complex; complexed with myr, w03, zn
2. Domain d1qjy1_: 1qjy 1: [23525]
  protein/RNA complex; complexed with myr, w03, zn
3. Domain d1qjy3_: 1qjy 3: [23527]
  protein/RNA complex; complexed with myr, w03, zn

More info for Species Human rhinovirus 16, (HRV-16) [TaxId:31708] from b.121.4.1 Rhinovirus coat proteins

Timeline for Species Human rhinovirus 16, (HRV-16) [TaxId:31708] from b.121.4.1 Rhinovirus coat proteins:

Species Human rhinovirus 16, (HRV-16) [TaxId:31708] from b.121.4.1 Rhinovirus coat proteins first appeared (with stable ids) in SCOP 1.55, called Species Human rhinovirus 16 [TaxId:31708] from b.10.1.4 Rhinovirus coat protein
Species Human rhinovirus 16, (HRV-16) [TaxId:31708] from b.121.4.1 Rhinovirus coat proteins appears in SCOPe 2.07