Class b: All beta proteins [48724] (180 folds) |
Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies |
Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) |
Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins) the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2 there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus) |
Protein Rhinovirus coat proteins [49670] (5 species) |
Species Human rhinovirus 16, (HRV-16) [TaxId:31708] [49672] (9 PDB entries) |
Domain d1c8m.1: 1c8m 4:,2: [83044] complexed with w11, zn |
PDB Entry: 1c8m (more details), 2.8 Å
SCOPe Domain Sequences for d1c8m.1:
Sequence, based on SEQRES records: (download)
>g1c8m.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human rhinovirus 16, (HRV-16) [TaxId: 31708]} gaqvsrqnvgthstqnmvsngssinyfninyfkdaassgasrldXsdriiqitrgdstit sqdvanavvgygvwphyltpqdataidkptqpdtssnrfytldskmwnstskgwwwklpd alkdmgifgenmfyhflgrsgytvhvqcnaskfhqgtllvvmipehqlatvnkgnvnagy kythpgeagrevgtqvenekqpsddnwlnfdgtllgnllifphqfinlrsnnsatlivpy vnavpmdsmvrhnnwslviipvcqlqsnnisnivpitvsispmcaefsgaraktvvq
>g1c8m.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human rhinovirus 16, (HRV-16) [TaxId: 31708]} gaqvsrqsinyfninyfkdaassgasrldXsdriiqitrgdstitsqdvanavvgygvwp hyltpqdataidkptqpdtssnrfytldskmwnstskgwwwklpdalkdmgifgenmfyh flgrsgytvhvqcnaskfhqgtllvvmipehqlatvnkgnvnagykythpgeagrevgtq venekqpsddnwlnfdgtllgnllifphqfinlrsnnsatlivpyvnavpmdsmvrhnnw slviipvcqlqsnnisnivpitvsispmcaefsgaraktvvq
Timeline for d1c8m.1:
View in 3D Domains from other chains: (mouse over for more information) d1c8m1_, d1c8m1_, d1c8m3_, d1c8m3_ |