Lineage for d1v9u.1 (1v9u 4:,2:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2821496Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2821778Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2821779Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 2821900Protein Rhinovirus coat proteins [49670] (5 species)
  7. 2821946Species Human rhinovirus A 2 (HRV-2) [TaxId:12130] [49674] (2 PDB entries)
  8. 2821950Domain d1v9u.1: 1v9u 4:,2: [100550]
    Other proteins in same PDB: d1v9u5_
    complexed with ca, dao

Details for d1v9u.1

PDB Entry: 1v9u (more details), 3.6 Å

PDB Description: Human Rhinovirus 2 bound to a fragment of its cellular receptor protein
PDB Compounds: (2:) coat protein vp2, (4:) coat protein vp4

SCOPe Domain Sequences for d1v9u.1:

Sequence, based on SEQRES records: (download)

>g1v9u.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human rhinovirus A 2 (HRV-2) [TaxId: 12130]}

Sequence, based on observed residues (ATOM records): (download)

>g1v9u.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human rhinovirus A 2 (HRV-2) [TaxId: 12130]}

SCOPe Domain Coordinates for d1v9u.1:

Click to download the PDB-style file with coordinates for d1v9u.1.
(The format of our PDB-style files is described here.)

Timeline for d1v9u.1: