PDB entry 1qju

View 1qju on RCSB PDB site
Description: human rhinovirus 16 coat protein in complex with antiviral compound vp61209
Class: virus
Keywords: virus, nucleotidyltransferase, rhinovirus coat protein, RNA-binding, transferase, lipoprotein, win compound, phosphoprotein, thiol protease, capsid protein, drug, virion, membrane, helicase, protease, nucleotide-binding, human rhinovirus 16, RNA replication, antiviral compound, covalent protein-RNA linkage, myristate, hydrolase, cytoplasm, ATP-binding, cytoplasmic vesicle, host-virus interaction, RNA-directed RNA polymerase
Deposited on 1999-07-05, released 1999-07-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-05-08, with a file datestamp of 2019-05-03.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: protein vp1
    Species: HUMAN RHINOVIRUS 16 [TaxId:31708]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1qju1_
  • Chain '2':
    Compound: protein vp2
    Species: HUMAN RHINOVIRUS 16 [TaxId:31708]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1qju.1
  • Chain '3':
    Compound: protein vp3
    Species: HUMAN RHINOVIRUS 16 [TaxId:31708]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1qju3_
  • Chain '4':
    Compound: protein vp4
    Species: HUMAN RHINOVIRUS 16 [TaxId:31708]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1qju.1
  • Heterogens: ZN, W01, MYR, HOH

PDB Chain Sequences:

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qju1 (1:)
npveryvdevlnevlvvpninqshpttsnaapvldaaetghtnkiqpedtietryvqssq
tldemsvesflgrsgcihesvldivdnyndqsftkwninlqemaqirrkfemftyarfds
eitmvpsvaakdghighivmqymyvppgapipttrddyawqsgtnasvfwqhgqpfprfs
lpflsiasayymfydgydgdtyksrygtvvtndmgtlcsrivtseqlhkvkvvtriyhka
khtkawcprppravqyshthttnyklssevhndvairprtnlttv

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >1qju2 (2:)
spsveacgysdriiqitrgdstitsqdvanavvgygvwphyltpqdataidkptqpdtss
nrfytldskmwnstskgwwwklpdalkdmgifgenmfyhflgrsgytvhvqcnaskfhqg
tllvvmipehqlatvnkgnvnagykythpgeagrevgtqvenekqpsddnwlnfdgtllg
nllifphqfinlrsnnsatlivpyvnavpmdsmvrhnnwslviipvcqlqsnnisnivpi
tvsispmcaefsgaraktvvq

    Sequence, based on observed residues (ATOM records): (download) 
    >1qju2 (2:)
sdriiqitrgdstitsqdvanavvgygvwphyltpqdataidkptqpdtssnrfytldsk
mwnstskgwwwklpdalkdmgifgenmfyhflgrsgytvhvqcnaskfhqgtllvvmipe
hqlatvnkgnvnagykythpgeagrevgtqvenekqpsddnwlnfdgtllgnllifphqf
inlrsnnsatlivpyvnavpmdsmvrhnnwslviipvcqlqsnnisnivpitvsispmca
efsgaraktvvq

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qju3 (3:)
glpvyvtpgsgqfmttddmqspcalpwyhptkeifipgevknliemcqvdtlipinstqs
nignvsmytvtlspqtklaeeifaikvdiashplattligeiasyfthwtgslrfsfmfc
gtanttlkvllaytppgigkprsrkeamlgthvvwdvglqstvslvvpwisasqyrfttp
dtyssagyitcwyqtnfvvppntpntaemlcfvsgckdfclrmardtdlhkqtgpitq

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >1qju4 (4:)
gaqvsrqnvgthstqnmvsngsslnyfninyfkdaassgasrldfsqdpskftdpvkdvl
ekgiptlq

    Sequence, based on observed residues (ATOM records): (download) 
    >1qju4 (4:)
gaqvsrqslnyfninyfkdaassgasrld